ecoli-YFBB
Escherichia coli, Escherichia fergusonii, Escherichia albertii, MenH (EC 2.3.1.12) 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
Comment
Other strains: Escherichia coli (strains UTI89\/UPEC\; O139:H28\/E24377A\/ETEC\; O9:H4\/HS\; O6:K15:H31\/536\/UPEC\; O1:K1\/APEC YFBB\; O127:H6\/E2348\/69\/EPEC\; O45:K1\/S88\/ExPEC\; 55989\/EAEC\; O157:H7\/EC4115\/EHEC\/EC4196\/EC4486\/EC4076\/EC4401\/EC869\/EC508\/EC4501\/TW14359\/EC1212\/493-89\/H 2687\/3256-97\/LSU-61\/EC4206\/EC4045\/EC4042\/TW14359\/EHEC\/G5101\/1044\/1125\; O7:K1\/IAI39\/ExPEC\; O81\/ED1a\; O8\/IAI1\; K12\/MC410\/BW2952\; K12\/DH10B\; ATCC8739\/DSM1576\/Crooks\; O17:K52:H18\/UMN026\/ExPEC\; O78:H11\/H10407\/ETEC\; O83:H1\/NRG\/857C\/AIEC\; O104:H4 str. LB226692 01-09591 C236-11 09-7901 04-8351 11-3677 11-4404 11-4522 11-4623 11-4632 C1C2C3C4C5\; O7:K1 str. CE10 \; C227-11 NA114\; SE11: SMS-3-5\/SECEC\; O157:H7\/TW14588\; MS200-1\; MS119-7\; MS 84-1\; MS 45-1\; MS 187-1\; MS 21-1\; MS 116-1\; NC101\; MS 69-1\; MS 175-1\; MS 196-1\; MS 107-1\; MS 182-1\; MS 146-1\; B185\; B354\; W\; E110019\; 83972\; KO11\; 53638\; F11\; FVEC1412\; E22\; MS 198-1\; MS 21-1\; MS 185-1\; MS 115-1\; MS 78-1\; MS 145-7\; MS 124-1\; FVEC1302\; B7A\; MS 116-1\; B\/BL21-DE3\; B\/BL21\; O103:H2\/12009\/EHEC\; O26:H11\/11368\/EHEC\; OR:K5:H- ABU83972\; UM146\; 1827-70\; 2362-75\; MS 110-3\; MS 153-1\; MS 16-3\; 3431\; MS 85-1\; 83972\; K12\/MC4100\/BW2952\; B\/REL606\; MS 117-3 2\; MS 60-1\; MS 57-2 2\; H252\; H263\; E1167\; E1520\; E482\; H120\; TW10509\; H489\; TA007\; M863\; B253\; STEC_7v\;UMNK88\; H736\; M605\; M718\; TA206\; TA143\; TA271\; H591\; H299\; AA86\; PCN033\; UMNF18\; STEC_B2F1\; STEC_C165-02\; 2534-86\; 3030-1\; STEC_94C\; STEC_DG131\; STEC_EH250\; G58-1\; STEC_H.1.8\; STEC_MHI813\; STEC_S1191\; TX1999\; XH001\; cloneA_i1 D i2 D i14\; K-12 substr. MDS42\; 4_1_47FAA\; B093\; E101\; H397\; H494\; TA124\; DEC2B\; DEC123456789101112131415 ABCDEF\; O55:H7 str. RM12579\; SCI-07\; W26\; J53\; AI27\; Xuzhou21\; O32:H37 str. P4\; H730\; B799\; 1.2741\; 97.0246\; 5.0588\; 1.2264\; 96.0497\; 3.2608\; 93.0624\; 4.0522\; JB1-95\; 96.154\; 5.0959\; 9.0111\; 4.0967\; 2.3916\; 3.3884\; 2.4168\; 3.2303\; 3003\; TW07793\; B41\; 900105 (10e)) Escherichia fergusonii (ATCC35469\/DSM13698\/CDC 0568-73\; B171\; 101-1\; O150:H5\/SE15\; B\/REL606\; O55:H7\/CB9615\/EPEC\/USDA 5905\; O44:H18\/042\/EAEC\; O111:H-11128\/EHEC\; O18:K1:H7\/IHE3034\/ExPEC\; ATCC33849\/DSM4235\/NCIB12045\/K12DH1\; 3_2_53FAA\; B088\; MS 175-1\; EPECa14\; E128010\; LT-68\; 1180\; 1357\; RN587\/1\; WV_060327\; EC4100B\; ATCC55124\/KO11\; ECD227)) Escherichia albertii TW07627 Escherichia sp. 3_2_53FAA\; sp. 4_1_40B Escherichia hermannii NBRC 105704 || the enterohaemorrhagic Escherichia coli O157:H7. corresponding gene is Trembl Q8XDX9 Q7AC17 || Escherichia coli O6 hypothetical protein yfbb Q8FFL2 AE016763
Relationship
Database
P37355
Q8XDX9
B1EJL5
D3H1D1
D7Y454
D8A5M1
E0IY49
D6JCG3
D6I9K4
Q8FFL2
Q1R9F0
A7ZP82
A8A2D1
Q0TFH8
A1ADB5
B7UFS6
B7MG31
B7LAS9
B5YXQ7
B7NNU3
B7MXU6
B7M5U6
C4ZUA6
B1X8X7
B1IXS3
B7N5M9
B6I7K7
B1LLL8
B7LM67
C3T2L2
D8E673
D7XL82
D8AAF6
E1IJS9
E1J4P6
E3PDW6
E6BKK9
E9T9G5
E9XKX8
F4T0A9
F4TGV1
F4VE33
I2UNC7
I2WPL4
F0JWC6
H5UXS3
P37355
Q8XDX9
B1EJL5
D3H1D1
D7Y454
D8A5M1
E0IY49
D6JCG3
D6I9K4
Q8FFL2
Q1R9F0
A7ZP82
A8A2D1
Q0TFH8
A1ADB5
B7UFS6
B7MG31
B7LAS9
B5YXQ7
B7NNU3
B7MXU6
B7M5U6
C4ZUA6
B1X8X7
B1IXS3
B7N5M9
B6I7K7
B1LLL8
B7LM67
C3T2L2
D8E673
D7XL82
D8AAF6
E1IJS9
E1J4P6
E3PDW6
E6BKK9
E9T9G5
E9XKX8
F4T0A9
F4TGV1
F4VE33
I2UNC7
I2WPL4
F0JWC6
H5UXS3
P37355
Q8XDX9
B1EJL5
D3H1D1
D7Y454
D8A5M1
E0IY49
D6JCG3
D6I9K4
Q8FFL2
Q1R9F0
A7ZP82
A8A2D1
Q0TFH8
A1ADB5
B7UFS6
B7MG31
B7LAS9
B5YXQ7
B7NNU3
B7MXU6
B7M5U6
C4ZUA6
B1X8X7
B1IXS3
B7N5M9
B6I7K7
B1LLL8
B7LM67
C3T2L2
D8E673
D7XL82
D8AAF6
E1IJS9
E1J4P6
E3PDW6
E6BKK9
E9T9G5
E9XKX8
F4T0A9
F4TGV1
F4VE33
I2UNC7
I2WPL4
F0JWC6
H5UXS3
P37355
Q8XDX9
B1EJL5
D3H1D1
D7Y454
D8A5M1
E0IY49
D6JCG3
D6I9K4
Q8FFL2
Q1R9F0
A7ZP82
A8A2D1
Q0TFH8
A1ADB5
B7UFS6
B7MG31
B7LAS9
B5YXQ7
B7NNU3
B7MXU6
B7M5U6
C4ZUA6
B1X8X7
B1IXS3
B7N5M9
B6I7K7
B1LLL8
B7LM67
C3T2L2
D8E673
D7XL82
D8AAF6
E1IJS9
E1J4P6
E3PDW6
E6BKK9
E9T9G5
E9XKX8
F4T0A9
F4TGV1
F4VE33
I2UNC7
I2WPL4
F0JWC6
H5UXS3
P37355
Q8XDX9
B1EJL5
D3H1D1
D7Y454
D8A5M1
E0IY49
D6JCG3
D6I9K4
Q8FFL2
Q1R9F0
A7ZP82
A8A2D1
Q0TFH8
A1ADB5
B7UFS6
B7MG31
B7LAS9
B5YXQ7
B7NNU3
B7MXU6
B7M5U6
C4ZUA6
B1X8X7
B1IXS3
B7N5M9
B6I7K7
B1LLL8
B7LM67
C3T2L2
D8E673
D7XL82
D8AAF6
E1IJS9
E1J4P6
E3PDW6
E6BKK9
E9T9G5
E9XKX8
F4T0A9
F4TGV1
F4VE33
I2UNC7
I2WPL4
F0JWC6
H5UXS3
Sequence
Peptide
MILHAQAKHG KPGLPWLVFL HGFSGDCHEW QEVGEAFADY SRLYVDLPGH GGSAAISVDG FDDVTDLLRK TLVSYNILDF WLVGYSLGGR VAMMAACQGL AGLCGVIVEG GHPGLQNAEQ RAERQRSDRQ WVQRFLTEPL TAVFADWYQQ PVFASLNDDQ RRELVALRSN NNGATLAAML EATSLAVQPD LRANLSARTF AFYYLCGERD SKFRALAAEL AADCHVIPRA GHNAHRENPA GVIASLAQIL RF
References
| Title : Molecular Basis of the General Base Catalysis of an alpha\/beta-Hydrolase Catalytic Triad - Sun_2014_J.Biol.Chem_289_15867 |
| Author(s) : Sun Y , Yin S , Feng Y , Li J , Zhou J , Liu C , Zhu G , Guo Z |
| Ref : Journal of Biological Chemistry , 289 :15867 , 2014 |
| Abstract : Sun_2014_J.Biol.Chem_289_15867 |
| ESTHER : Sun_2014_J.Biol.Chem_289_15867 |
| PubMedSearch : Sun_2014_J.Biol.Chem_289_15867 |
| PubMedID: 24737327 |
| Gene_locus related to this paper: ecoli-YFBB |
| Title : Crystal Structures of E. coli Native MenH and Two Active Site Mutants. - Johnston_2013_Plos.One_8_e61325 |
| Author(s) : Johnston JM , Jiang M , Guo Z , Baker EN |
| Ref : PLoS ONE , 8 :e61325 , 2013 |
| Abstract : Johnston_2013_Plos.One_8_e61325 |
| ESTHER : Johnston_2013_Plos.One_8_e61325 |
| PubMedSearch : Johnston_2013_Plos.One_8_e61325 |
| PubMedID: 23637813 |
| Gene_locus related to this paper: ecoli-YFBB |
| Title : Draft genome sequences of the diarrheagenic Escherichia coli collection - Hazen_2012_J.Bacteriol_194_3026 |
| Author(s) : Hazen TH , Sahl JW , Redman JC , Morris CR , Daugherty SC , Chibucos MC , Sengamalay NA , Fraser-Liggett CM , Steinsland H , Whittam TS , Whittam B , Manning SD , Rasko DA |
| Ref : Journal of Bacteriology , 194 :3026 , 2012 |
| Abstract : Hazen_2012_J.Bacteriol_194_3026 |
| ESTHER : Hazen_2012_J.Bacteriol_194_3026 |
| PubMedSearch : Hazen_2012_J.Bacteriol_194_3026 |
| PubMedID: 22582382 |
| Gene_locus related to this paper: ecoli-d7xp23 , ecoli-fes , ecoli-MCMK , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930 , ecoli-YfhR |
| Title : Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic Escherichia coli - Shepard_2012_J.Bacteriol_194_395 |
| Author(s) : Shepard SM , Danzeisen JL , Isaacson RE , Seemann T , Achtman M , Johnson TJ |
| Ref : Journal of Bacteriology , 194 :395 , 2012 |
| Abstract : Shepard_2012_J.Bacteriol_194_395 |
| ESTHER : Shepard_2012_J.Bacteriol_194_395 |
| PubMedSearch : Shepard_2012_J.Bacteriol_194_395 |
| PubMedID: 22081385 |
| Gene_locus related to this paper: ecoli-fes , ecoli-estX , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yqia , ecoli-YfhR |
| Title : Escherichia coli serotype O55:H7 diversity supports parallel acquisition of bacteriophage at Shiga toxin phage insertion sites during evolution of the O157:H7 lineage - Kyle_2012_J.Bacteriol_194_1885 |
| Author(s) : Kyle JL , Cummings CA , Parker CT , Quinones B , Vatta P , Newton E , Huynh S , Swimley M , Degoricija L , Barker M , Fontanoz S , Nguyen K , Patel R , Fang R , Tebbs R , Petrauskene O , Furtado M , Mandrell RE |
| Ref : Journal of Bacteriology , 194 :1885 , 2012 |
| Abstract : Kyle_2012_J.Bacteriol_194_1885 |
| ESTHER : Kyle_2012_J.Bacteriol_194_1885 |
| PubMedSearch : Kyle_2012_J.Bacteriol_194_1885 |
| PubMedID: 22328665 |
| Gene_locus related to this paper: ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yhet , ecoli-yqia , ecoli-Z1930 |
| Title : A novel Escherichia coli O157:H7 clone causing a major hemolytic uremic syndrome outbreak in China - Xiong_2012_PLoS.One_7_e36144 |
| Author(s) : Xiong Y , Wang P , Lan R , Ye C , Wang H , Ren J , Jing H , Wang Y , Zhou Z , Bai X , Cui Z , Luo X , Zhao A , Zhang S , Sun H , Wang L , Xu J |
| Ref : PLoS ONE , 7 :e36144 , 2012 |
| Abstract : Xiong_2012_PLoS.One_7_e36144 |
| ESTHER : Xiong_2012_PLoS.One_7_e36144 |
| PubMedSearch : Xiong_2012_PLoS.One_7_e36144 |
| PubMedID: 22558360 |
| Gene_locus related to this paper: ecoli-ycfp , ecoli-YFBB , ecoli-yqia , ecoli-Z1341 |
| Title : Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011 - Grad_2012_Proc.Natl.Acad.Sci.U.S.A_109_3065 |
| Author(s) : Grad YH , Lipsitch M , Feldgarden M , Arachchi HM , Cerqueira GC , FitzGerald M , Godfrey P , Haas BJ , Murphy CI , Russ C , Sykes S , Walker BJ , Wortman JR , Young S , Zeng Q , Abouelleil A , Bochicchio J , Chauvin S , Desmet T , Gujja S , McCowan C , Montmayeur A , Steelman S , Frimodt-Moller J , Petersen AM , Struve C , Krogfelt KA , Bingen E , Weill FX , Lander ES , Nusbaum C , Birren BW , Hung DT , Hanage WP |
| Ref : Proc Natl Acad Sci U S A , 109 :3065 , 2012 |
| Abstract : Grad_2012_Proc.Natl.Acad.Sci.U.S.A_109_3065 |
| ESTHER : Grad_2012_Proc.Natl.Acad.Sci.U.S.A_109_3065 |
| PubMedSearch : Grad_2012_Proc.Natl.Acad.Sci.U.S.A_109_3065 |
| PubMedID: 22315421 |
| Gene_locus related to this paper: ecoli-fes , ecoli-MCMK , ecoli-yaim , ecoli-ycfp , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yqia , ecoli-YfhR |
| Title : Draft genome of a Brazilian avian-pathogenic Escherichia coli strain and in silico characterization of virulence-related genes - Rojas_2012_J.Bacteriol_194_3023 |
| Author(s) : Rojas TC , Parizzi LP , Tiba MR , Chen L , Pereira GA , Sangal V , Yang J , Yu J , Dias da Silveira W |
| Ref : Journal of Bacteriology , 194 :3023 , 2012 |
| Abstract : Rojas_2012_J.Bacteriol_194_3023 |
| ESTHER : Rojas_2012_J.Bacteriol_194_3023 |
| PubMedSearch : Rojas_2012_J.Bacteriol_194_3023 |
| PubMedID: 22582380 |
| Gene_locus related to this paper: ecoli-IROD , ecoli-IROE , ecoli-ycfp , ecoli-YFBB , ecoli-ypt1 , ecoli-YfhR |
| Title : Complete genome sequence of adherent invasive Escherichia coli UM146 isolated from Ileal Crohn's disease biopsy tissue - Krause_2011_J.Bacteriol_193_583 |
| Author(s) : Krause DO , Little AC , Dowd SE , Bernstein CN |
| Ref : Journal of Bacteriology , 193 :583 , 2011 |
| Abstract : Krause_2011_J.Bacteriol_193_583 |
| ESTHER : Krause_2011_J.Bacteriol_193_583 |
| PubMedSearch : Krause_2011_J.Bacteriol_193_583 |
| PubMedID: 21075930 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-entf , ecoli-IROD , ecoli-IROE , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yeiG , ecoli-YFBB , ecoli-yiel , ecoli-yqia , ecoli-YfhR , ecout-q1r7l6 |
| Title : Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India - Avasthi_2011_J.Bacteriol_193_4272 |
| Author(s) : Avasthi TS , Kumar N , Baddam R , Hussain A , Nandanwar N , Jadhav S , Ahmed N |
| Ref : Journal of Bacteriology , 193 :4272 , 2011 |
| Abstract : Avasthi_2011_J.Bacteriol_193_4272 |
| ESTHER : Avasthi_2011_J.Bacteriol_193_4272 |
| PubMedSearch : Avasthi_2011_J.Bacteriol_193_4272 |
| PubMedID: 21685291 |
| Gene_locus related to this paper: ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yiel , ecoli-yqia , ecoli-YfhR , ecolx-f4suw9 , ecolx-g0dan0 |
| Title : Complete genome sequence of the neonatal-meningitis-associated Escherichia coli strain CE10 - Lu_2011_J.Bacteriol_193_7005 |
| Author(s) : Lu S , Zhang X , Zhu Y , Kim KS , Yang J , Jin Q |
| Ref : Journal of Bacteriology , 193 :7005 , 2011 |
| Abstract : Lu_2011_J.Bacteriol_193_7005 |
| ESTHER : Lu_2011_J.Bacteriol_193_7005 |
| PubMedSearch : Lu_2011_J.Bacteriol_193_7005 |
| PubMedID: 22123760 |
| Gene_locus related to this paper: ecoli-ybff , ecoli-YFBB , ecoli-yqia , ecoli-YfhR |
| Title : Rates of mutation and host transmission for an Escherichia coli clone over 3 years - Reeves_2011_PLoS.One_6_e26907 |
| Author(s) : Reeves PR , Liu B , Zhou Z , Li D , Guo D , Ren Y , Clabots C , Lan R , Johnson JR , Wang L |
| Ref : PLoS ONE , 6 :e26907 , 2011 |
| Abstract : Reeves_2011_PLoS.One_6_e26907 |
| ESTHER : Reeves_2011_PLoS.One_6_e26907 |
| PubMedSearch : Reeves_2011_PLoS.One_6_e26907 |
| PubMedID: 22046404 |
| Gene_locus related to this paper: ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yqia |
| Title : Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology - Mellmann_2011_PLoS.One_6_e22751 |
| Author(s) : Mellmann A , Harmsen D , Cummings CA , Zentz EB , Leopold SR , Rico A , Prior K , Szczepanowski R , Ji Y , Zhang W , McLaughlin SF , Henkhaus JK , Leopold B , Bielaszewska M , Prager R , Brzoska PM , Moore RL , Guenther S , Rothberg JM , Karch H |
| Ref : PLoS ONE , 6 :e22751 , 2011 |
| Abstract : Mellmann_2011_PLoS.One_6_e22751 |
| ESTHER : Mellmann_2011_PLoS.One_6_e22751 |
| PubMedSearch : Mellmann_2011_PLoS.One_6_e22751 |
| PubMedID: 21799941 |
| Gene_locus related to this paper: ecoli-ycfp , ecoli-YFBB , ecoli-yqia , ecoli-YfhR |
| Title : Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany - Rasko_2011_N.Engl.J.Med_365_709 |
| Author(s) : Rasko DA , Webster DR , Sahl JW , Bashir A , Boisen N , Scheutz F , Paxinos EE , Sebra R , Chin CS , Iliopoulos D , Klammer A , Peluso P , Lee L , Kislyuk AO , Bullard J , Kasarskis A , Wang S , Eid J , Rank D , Redman JC , Steyert SR , Frimodt-Moller J , Struve C , Petersen AM , Krogfelt KA , Nataro JP , Schadt EE , Waldor MK |
| Ref : N Engl J Med , 365 :709 , 2011 |
| Abstract : Rasko_2011_N.Engl.J.Med_365_709 |
| ESTHER : Rasko_2011_N.Engl.J.Med_365_709 |
| PubMedSearch : Rasko_2011_N.Engl.J.Med_365_709 |
| PubMedID: 21793740 |
| Gene_locus related to this paper: ecoli-fes , ecoli-MCMK , ecoli-yaim , ecoli-ycfp , ecoli-YFBB , ecoli-yiel , ecoli-yqia |
| Title : Genome sequence of a porcine extraintestinal pathogenic Escherichia coli strain - Tan_2011_J.Bacteriol_193_5038 |
| Author(s) : Tan C , Xu Z , Zheng H , Liu W , Tang X , Shou J , Wu B , Wang S , Zhao GP , Chen H |
| Ref : Journal of Bacteriology , 193 :5038 , 2011 |
| Abstract : Tan_2011_J.Bacteriol_193_5038 |
| ESTHER : Tan_2011_J.Bacteriol_193_5038 |
| PubMedSearch : Tan_2011_J.Bacteriol_193_5038 |
| PubMedID: 21742868 |
| Gene_locus related to this paper: ecoli-IROD , ecoli-IROE , ecoli-ycfp , ecoli-YFBB , ecoli-ypt1 , ecoli-yqia |
| Title : Host imprints on bacterial genomes--rapid, divergent evolution in individual patients - Zdziarski_2010_PLoS.Pathog_6_e1001078 |
| Author(s) : Zdziarski J , Brzuszkiewicz E , Wullt B , Liesegang H , Biran D , Voigt B , Gronberg-Hernandez J , Ragnarsdottir B , Hecker M , Ron EZ , Daniel R , Gottschalk G , Hacker J , Svanborg C , Dobrindt U |
| Ref : PLoS Pathog , 6 :e1001078 , 2010 |
| Abstract : Zdziarski_2010_PLoS.Pathog_6_e1001078 |
| ESTHER : Zdziarski_2010_PLoS.Pathog_6_e1001078 |
| PubMedSearch : Zdziarski_2010_PLoS.Pathog_6_e1001078 |
| PubMedID: 20865122 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-yafa , ecoli-ybff , ecoli-ycfp , ecoli-YFBB , ecoli-yqia , ecoli-YfhR |
| Title : Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes - Nash_2010_BMC.Genomics_11_667 |
| Author(s) : Nash JH , Villegas A , Kropinski AM , Aguilar-Valenzuela R , Konczy P , Mascarenhas M , Ziebell K , Torres AG , Karmali MA , Coombes BK |
| Ref : BMC Genomics , 11 :667 , 2010 |
| Abstract : Nash_2010_BMC.Genomics_11_667 |
| ESTHER : Nash_2010_BMC.Genomics_11_667 |
| PubMedSearch : Nash_2010_BMC.Genomics_11_667 |
| PubMedID: 21108814 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-entf , ecoli-IROD , ecoli-rdmC , ecoli-yafa , ecoli-ybff , ecoli-ycfp , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yqia , ecos5-d2nhh3 |
| Title : A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407 - Crossman_2010_J.Bacteriol_192_5822 |
| Author(s) : Crossman LC , Chaudhuri RR , Beatson SA , Wells TJ , Desvaux M , Cunningham AF , Petty NK , Mahon V , Brinkley C , Hobman JL , Savarino SJ , Turner SM , Pallen MJ , Penn CW , Parkhill J , Turner AK , Johnson TJ , Thomson NR , Smith SG , Henderson IR |
| Ref : Journal of Bacteriology , 192 :5822 , 2010 |
| Abstract : Crossman_2010_J.Bacteriol_192_5822 |
| ESTHER : Crossman_2010_J.Bacteriol_192_5822 |
| PubMedSearch : Crossman_2010_J.Bacteriol_192_5822 |
| PubMedID: 20802035 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-yeiG , ecoli-YFBB , ecoli-yiel , ecoli-yqia |
| Title : Derivation of Escherichia coli O157:H7 from its O55:H7 precursor - Zhou_2010_PLoS.One_5_e8700 |
| Author(s) : Zhou Z , Li X , Liu B , Beutin L , Xu J , Ren Y , Feng L , Lan R , Reeves PR , Wang L |
| Ref : PLoS ONE , 5 :e8700 , 2010 |
| Abstract : Zhou_2010_PLoS.One_5_e8700 |
| ESTHER : Zhou_2010_PLoS.One_5_e8700 |
| PubMedSearch : Zhou_2010_PLoS.One_5_e8700 |
| PubMedID: 20090843 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |
| Title : Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2 - Toh_2010_J.Bacteriol_192_1165 |
| Author(s) : Toh H , Oshima K , Toyoda A , Ogura Y , Ooka T , Sasamoto H , Park SH , Iyoda S , Kurokawa K , Morita H , Itoh K , Taylor TD , Hayashi T , Hattori M |
| Ref : Journal of Bacteriology , 192 :1165 , 2010 |
| Abstract : Toh_2010_J.Bacteriol_192_1165 |
| ESTHER : Toh_2010_J.Bacteriol_192_1165 |
| PubMedSearch : Toh_2010_J.Bacteriol_192_1165 |
| PubMedID: 20008064 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecos5-d2nhh3 , yerpe-YBTT , ecolx-f4suw9 |
| Title : Catalytic mechanism of SHCHC synthase in the menaquinone biosynthesis of Escherichia coli: identification and mutational analysis of the active site residues - Jiang_2009_Biochemistry_48_6921 |
| Author(s) : Jiang M , Chen X , Wu XH , Chen M , Wu YD , Guo Z |
| Ref : Biochemistry , 48 :6921 , 2009 |
| Abstract : Jiang_2009_Biochemistry_48_6921 |
| ESTHER : Jiang_2009_Biochemistry_48_6921 |
| PubMedSearch : Jiang_2009_Biochemistry_48_6921 |
| PubMedID: 19545176 |
| Gene_locus related to this paper: ecoli-YFBB |
| Title : Genome sequences of Escherichia coli B strains REL606 and BL21(DE3) - Jeong_2009_J.Mol.Biol_394_644 |
| Author(s) : Jeong H , Barbe V , Lee CH , Vallenet D , Yu DS , Choi SH , Couloux A , Lee SW , Yoon SH , Cattolico L , Hur CG , Park HS , Segurens B , Kim SC , Oh TK , Lenski RE , Studier FW , Daegelen P , Kim JF |
| Ref : Journal of Molecular Biology , 394 :644 , 2009 |
| Abstract : Jeong_2009_J.Mol.Biol_394_644 |
| ESTHER : Jeong_2009_J.Mol.Biol_394_644 |
| PubMedSearch : Jeong_2009_J.Mol.Biol_394_644 |
| PubMedID: 19786035 |
| Gene_locus related to this paper: eco57-b3a913 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR |
| Title : A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis - Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713 |
| Author(s) : Leopold SR , Magrini V , Holt NJ , Shaikh N , Mardis ER , Cagno J , Ogura Y , Iguchi A , Hayashi T , Mellmann A , Karch H , Besser TE , Sawyer SA , Whittam TS , Tarr PI |
| Ref : Proc Natl Acad Sci U S A , 106 :8713 , 2009 |
| Abstract : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713 |
| ESTHER : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713 |
| PubMedSearch : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713 |
| PubMedID: 19439656 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , neucr-q7sha3 |
| Title : Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348\/69 - Iguchi_2009_J.Bacteriol_191_347 |
| Author(s) : Iguchi A , Thomson NR , Ogura Y , Saunders D , Ooka T , Henderson IR , Harris D , Asadulghani M , Kurokawa K , Dean P , Kenny B , Quail MA , Thurston S , Dougan G , Hayashi T , Parkhill J , Frankel G |
| Ref : Journal of Bacteriology , 191 :347 , 2009 |
| Abstract : Iguchi_2009_J.Bacteriol_191_347 |
| ESTHER : Iguchi_2009_J.Bacteriol_191_347 |
| PubMedSearch : Iguchi_2009_J.Bacteriol_191_347 |
| PubMedID: 18952797 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR |
| Title : Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12 - Ferenci_2009_J.Bacteriol_191_4025 |
| Author(s) : Ferenci T , Zhou Z , Betteridge T , Ren Y , Liu Y , Feng L , Reeves PR , Wang L |
| Ref : Journal of Bacteriology , 191 :4025 , 2009 |
| Abstract : Ferenci_2009_J.Bacteriol_191_4025 |
| ESTHER : Ferenci_2009_J.Bacteriol_191_4025 |
| PubMedSearch : Ferenci_2009_J.Bacteriol_191_4025 |
| PubMedID: 19376874 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR |
| Title : The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse - Durfee_2008_J.Bacteriol_190_2597 |
| Author(s) : Durfee T , Nelson R , Baldwin S , Plunkett G, 3rd , Burland V , Mau B , Petrosino JF , Qin X , Muzny DM , Ayele M , Gibbs RA , Csorgo B , Posfai G , Weinstock GM , Blattner FR |
| Ref : Journal of Bacteriology , 190 :2597 , 2008 |
| Abstract : Durfee_2008_J.Bacteriol_190_2597 |
| ESTHER : Durfee_2008_J.Bacteriol_190_2597 |
| PubMedSearch : Durfee_2008_J.Bacteriol_190_2597 |
| PubMedID: 18245285 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR |
| Title : Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult - Oshima_2008_DNA.Res_15_375 |
| Author(s) : Oshima K , Toh H , Ogura Y , Sasamoto H , Morita H , Park SH , Ooka T , Iyoda S , Taylor TD , Hayashi T , Itoh K , Hattori M |
| Ref : DNA Research , 15 :375 , 2008 |
| Abstract : Oshima_2008_DNA.Res_15_375 |
| ESTHER : Oshima_2008_DNA.Res_15_375 |
| PubMedSearch : Oshima_2008_DNA.Res_15_375 |
| PubMedID: 18931093 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |
| Title : Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5 - Fricke_2008_J.Bacteriol_190_6779 |
| Author(s) : Fricke WF , Wright MS , Lindell AH , Harkins DM , Baker-Austin C , Ravel J , Stepanauskas R |
| Ref : Journal of Bacteriology , 190 :6779 , 2008 |
| Abstract : Fricke_2008_J.Bacteriol_190_6779 |
| ESTHER : Fricke_2008_J.Bacteriol_190_6779 |
| PubMedSearch : Fricke_2008_J.Bacteriol_190_6779 |
| PubMedID: 18708504 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-estX , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecosm-b1lhu2 |
| Title : Identification and characterization of (1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase in the menaquinone biosynthesis of Escherichia coli - Jiang_2008_Biochemistry_47_3426 |
| Author(s) : Jiang M , Chen X , Guo ZF , Cao Y , Chen M , Guo Z |
| Ref : Biochemistry , 47 :3426 , 2008 |
| Abstract : Jiang_2008_Biochemistry_47_3426 |
| ESTHER : Jiang_2008_Biochemistry_47_3426 |
| PubMedSearch : Jiang_2008_Biochemistry_47_3426 |
| PubMedID: 18284213 |
| Gene_locus related to this paper: ecoli-YFBB |
| Title : The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates - Rasko_2008_J.Bacteriol_190_6881 |
| Author(s) : Rasko DA , Rosovitz MJ , Myers GS , Mongodin EF , Fricke WF , Gajer P , Crabtree J , Sebaihia M , Thomson NR , Chaudhuri R , Henderson IR , Sperandio V , Ravel J |
| Ref : Journal of Bacteriology , 190 :6881 , 2008 |
| Abstract : Rasko_2008_J.Bacteriol_190_6881 |
| ESTHER : Rasko_2008_J.Bacteriol_190_6881 |
| PubMedSearch : Rasko_2008_J.Bacteriol_190_6881 |
| PubMedID: 18676672 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z2445 , ecoli-YfhR |
| Title : The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes - Johnson_2007_J.Bacteriol_189_3228 |
| Author(s) : Johnson TJ , Kariyawasam S , Wannemuehler Y , Mangiamele P , Johnson SJ , Doetkott C , Skyberg JA , Lynne AM , Johnson JR , Nolan LK |
| Ref : Journal of Bacteriology , 189 :3228 , 2007 |
| Abstract : Johnson_2007_J.Bacteriol_189_3228 |
| ESTHER : Johnson_2007_J.Bacteriol_189_3228 |
| PubMedSearch : Johnson_2007_J.Bacteriol_189_3228 |
| PubMedID: 17293413 |
| Gene_locus related to this paper: ecok1-a1acc0 , ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-YfhR , ecout-q1r7l6 , yerpe-YBTT |
| Title : Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536 - Hochhut_2006_Mol.Microbiol_61_584 |
| Author(s) : Hochhut B , Wilde C , Balling G , Middendorf B , Dobrindt U , Brzuszkiewicz E , Gottschalk G , Carniel E , Hacker J |
| Ref : Molecular Microbiology , 61 :584 , 2006 |
| Abstract : Hochhut_2006_Mol.Microbiol_61_584 |
| ESTHER : Hochhut_2006_Mol.Microbiol_61_584 |
| PubMedSearch : Hochhut_2006_Mol.Microbiol_61_584 |
| PubMedID: 16879640 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecolx-q707d7 , yerpe-YBTT |
| Title : Enzyme genomics: Application of general enzymatic screens to discover new enzymes - Kuznetsova_2005_FEMS.Microbiol.Rev_29_263 |
| Author(s) : Kuznetsova E , Proudfoot M , Sanders SA , Reinking J , Savchenko A , Arrowsmith CH , Edwards AM , Yakunin AF |
| Ref : FEMS Microbiology Reviews , 29 :263 , 2005 |
| Abstract : Kuznetsova_2005_FEMS.Microbiol.Rev_29_263 |
| ESTHER : Kuznetsova_2005_FEMS.Microbiol.Rev_29_263 |
| PubMedSearch : Kuznetsova_2005_FEMS.Microbiol.Rev_29_263 |
| PubMedID: 15808744 |
| Gene_locus related to this paper: ecoli-yafa , ecoli-ybff , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yjfp , ecoli-ypfh , ecoli-yqia , ecoli-yuar |
| Title : Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 - Hayashi_2001_DNA.Res_8_11 |
| Author(s) : Hayashi T , Makino K , Ohnishi M , Kurokawa K , Ishii K , Yokoyama K , Han CG , Ohtsubo E , Nakayama K , Murata T , Tanaka M , Tobe T , Iida T , Takami H , Honda T , Sasakawa C , Ogasawara N , Yasunaga T , Kuhara S , Shiba T , Hattori M , Shinagawa H |
| Ref : DNA Research , 8 :11 , 2001 |
| Abstract : Hayashi_2001_DNA.Res_8_11 |
| ESTHER : Hayashi_2001_DNA.Res_8_11 |
| PubMedSearch : Hayashi_2001_DNA.Res_8_11 |
| PubMedID: 11258796 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1341 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |
| Title : Construction of a contiguous 874-kb sequence of the Escherichia coli -K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features - Yamamoto_1997_DNA.Res_4_91 |
| Author(s) : Yamamoto Y , Aiba H , Baba T , Hayashi K , Inada T , Isono K , Itoh T , Kimura S , Kitagawa M , Makino K , Miki T , Mitsuhashi N , Mizobuchi K , Mori H , Nakade S , Nakamura Y , Nashimoto H , Oshima T , Oyama S , Saito N , Sampei G , Satoh Y , Sivasundaram S , Tagami H , Horiuchi T , et al. |
| Ref : DNA Research , 4 :91 , 1997 |
| Abstract : Yamamoto_1997_DNA.Res_4_91 |
| ESTHER : Yamamoto_1997_DNA.Res_4_91 |
| PubMedSearch : Yamamoto_1997_DNA.Res_4_91 |
| PubMedID: 9205837 |
| Gene_locus related to this paper: ecoli-YFBB , ecoli-YfhR |
| Title : The complete genome sequence of Escherichia coli K-12 - Blattner_1997_Science_277_1453 |
| Author(s) : Blattner FR , Plunkett G, 3rd , Bloch CA , Perna NT , Burland V , Riley M , Collado-Vides J , Glasner JD , Rode CK , Mayhew GF , Gregor J , Davis NW , Kirkpatrick HA , Goeden MA , Rose DJ , Mau B , Shao Y |
| Ref : Science , 277 :1453 , 1997 |
| Abstract : Blattner_1997_Science_277_1453 |
| ESTHER : Blattner_1997_Science_277_1453 |
| PubMedSearch : Blattner_1997_Science_277_1453 |
| PubMedID: 9278503 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR |
| Title : Menaquinone (vitamin K2) biosynthesis: nucleotide sequence and expression of the menB gene from Escherichia coli - Sharma_1992_J.Bacteriol_174_5057 |
| Author(s) : Sharma V , Suvarna K , Meganathan R , Hudspeth ME |
| Ref : Journal of Bacteriology , 174 :5057 , 1992 |
| Abstract : Sharma_1992_J.Bacteriol_174_5057 |
| ESTHER : Sharma_1992_J.Bacteriol_174_5057 |
| PubMedSearch : Sharma_1992_J.Bacteriol_174_5057 |
| PubMedID: 1629162 |
| Gene_locus related to this paper: ecoli-YFBB |