rhoso-halo1
Rhodococcus rhodochrous (Pseudomonas pavonaceae), Rhodococcus sp., Mycobacterium sp haloalkane dehalogenase (EC 3.8.1.5) DhaA HaloTag (hyperstable variant DhaA115)
Comment
Other strains: Rhodococcus rhodochrous (NCIMB 13064)\; Rhodococcus sp. (strain TDTM0003)\; Mycobacterium sp (strain GP1)\; Pseudomonas pavonaceae) encoded on plasmid. The HaloTag is Rhodococcus rhodochrous haloalkane dehalogenase, which has a genetically modified active site, which specifically binds the reactive chloroalkane linker and has an increased rate of ligand binding. HaloTagged fusion proteins can be expressed easily and allow enzymatic assays, cellular imaging, protein arrays, determination of sub-cellular localization.(HaloTag L47V, S58T, D78G, Y87F, L88M, C128F, A155T, E160K, A167V, A172T, K175M, C176G, K195N, A224E, N227D, E257K, T264A, H272N, Y273L) Some of the most recent structures of proteins with halotag are not included in ESTHER as the tag is only a tool and not analyzed as an alpha\/beta hydolase: see for example 7KTS 7KTR. DhaA115 thermostable multiple-point mutants || haloalkane dehalogenase Pseudomonas pavonaceae differs only with two aa of Rhodococcus haloalkane dehalogenase. Also identical to Mycobacterium sp (same paper)
Relationship
Family : Haloalkane_dehalogenase-HLD2
Block : X
Position in NCBI Life Tree : Rhodococcus rhodochrous
Molecular evidence
No mutation
1BN6
1BN7
1CQW
8J1O
8B6N
8B6O
8B6P
8B6Q
8OE6
8OE2
7O8B
7O3O
8B6R
8B6S
8B6T
7ZIV
7ZIW
7ZIX
7ZBD
7ZBB
7ZBA
7WAM
7WAN
7ZJ0
7ZIZ
7ZIY
7PCW
7PCX
5VNP
7OO4
7OND
7OIP
7OIR
6ZVU
6ZVV
6ZVW
6ZVX
6ZVY
6ZCC
6Y7A
6Y7B
6TY7
6XT8
6XTC
6SP8
6SP5
6U2M
6U32
5Y2Y
5Y2X
5UY1
5UXZ
4KAJ
4KAA
4KAC
4KAF
4KYV
4WCV
5FLK
4FWB
4F5Z
4F60
4E46
3SK0
3RK4
3FWH
3G9X
4HZG
3FBW
2V9Z
No kinetic
No disease
1-Chlorobutane
1-Chlorohexane
1-Bromobutane
1-Iodopropane
1-Iodohexane
1-Iodobutane
1,3-dichloropropane
1,5-dichloropentane
1-Bromo-3-Chloropropane
1,3-diiodopropane
2-Iodobutane
2-Bromo-1-Chloropropane
1-Chloro-2-(2-chloroethoxy)ethane
Chlorocyclohexane
Bromocyclohexane
(Bromomethyl)cylcohexane
1-Bromo-2-chloroethane
Chlorocyclopentane
4-Bromobutanenitrile
1,2,3-Tribromopropane
1,2-Dibromo-3-Chloropropane
3-Chloro-2-methylprop-1-ene
2,3-Dichloroprop-1-ene
1,2,3-trichloropropane
1,2-dibromopropane
1-bromohexane
1,3-dibromopropane
1,2-dibromoethane
1,2-dichloroethane
Chloroalkane-Cyanine3-fluorophore
TMR-S4
TMR-T4
TMR-S5
TMR-Hy5
TMR-T5
HyT13
TRaQ-G-ILQ
TRaQ-G-ILU
TRaQ-G-ctrl
Me-TRaQ-G
VL1-8MH
UL2-8MS
P1-benzoxadiazole-fluorogenic-ligand
VF2-Styrylpyridine-Dye
Chloroalkane-carbopyronine-fluorophore
Chloroalkane-tetramethylrhodamine-fluorophore
tetramethylrhodamine-HaloTag-ligand
JF635i
JF635
dansyl-PEG2-HaloTag
P9-benzothiadiazole
HALSTS-1Q9
HALSTS1
Benzoic-acid
Sequence
Peptide
MSEIGTGFPF DPHYVEVLGE RMHYVDVGPR DGTPVLFLHG NPTSSYLWRN IIPHVAPSHR CIAPDLIGMG KSDKPDLDYF FDDHVRYLDA FIEALGLEEV VLVIHDWGSA LGFHWAKRNP ERVKGIACME FIRPIPTWDE WPEFARETFQ AFRTADVGRE LIIDQNAFIE GALPKCVVRP LTEVEMDHYR EPFLKPVDRE PLWRFPNELP IAGEPANIVA LVEAYMNWLH QSPVPKLLFW GTPGVLIPPA EAARLAESLP NCKTVDIGPG LHYLQEDNPD LIGSEIARWL PAL
References
| Title : Advancing Enzyme's Stability and Catalytic Efficiency through Synergy of Force-Field Calculations, Evolutionary Analysis, and Machine Learning - Kunka_2023_ACS.Catal_13_12506 |
| Author(s) : Kunka A , Marques SM , Havlasek M , Vasina M , Velatova N , Cengelova L , Kovar D , Damborsky J , Marek M , Bednar D , Prokop Z |
| Ref : ACS Catal , 13 :12506 , 2023 |
| Abstract : Kunka_2023_ACS.Catal_13_12506 |
| ESTHER : Kunka_2023_ACS.Catal_13_12506 |
| PubMedSearch : Kunka_2023_ACS.Catal_13_12506 |
| PubMedID: 37822856 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : A Locally Activatable Sensor for Robust Quantification of Organellar Glutathione - Hubner_2022_bioRxiv__ |
| Author(s) : Hubner S , Quargnali G , Thallmair S , Rivera-Fuentes P |
| Ref : Biorxiv , : , 2023 |
| Abstract : Hubner_2022_bioRxiv__ |
| ESTHER : Hubner_2022_bioRxiv__ |
| PubMedSearch : Hubner_2022_bioRxiv__ |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : A general method for the development of multicolor biosensors with large dynamic ranges - Hellweg_2023_Nat.Chem.Biol__ |
| Author(s) : Hellweg L , Edenhofer A , Barck L , Huppertz MC , Frei MS , Tarnawski M , Bergner A , Koch B , Johnsson K , Hiblot J |
| Ref : Nat Chemical Biology , : , 2023 |
| Abstract : Hellweg_2023_Nat.Chem.Biol__ |
| ESTHER : Hellweg_2023_Nat.Chem.Biol__ |
| PubMedSearch : Hellweg_2023_Nat.Chem.Biol__ |
| PubMedID: 37291200 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Exchangeable HaloTag Ligands for Super-Resolution Fluorescence Microscopy - Kompa_2023_J.Am.Chem.Soc_145_3075 |
| Author(s) : Kompa J , Bruins J , Glogger M , Wilhelm J , Frei MS , Tarnawski M , x , Este E , Heilemann M , Hiblot J , Johnsson K |
| Ref : Journal of the American Chemical Society , 145 :3075 , 2023 |
| Abstract : Kompa_2023_J.Am.Chem.Soc_145_3075 |
| ESTHER : Kompa_2023_J.Am.Chem.Soc_145_3075 |
| PubMedSearch : Kompa_2023_J.Am.Chem.Soc_145_3075 |
| PubMedID: 36716211 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : A chemical tool for blue light-inducible proximity photo-crosslinking in live cells - Mishra_2022_Chem.Sci_13_955 |
| Author(s) : Mishra PK , Kang MG , Lee H , Kim S , Choi S , Sharma N , Park CM , Ko J , Lee C , Seo JK , Rhee HW |
| Ref : Chem Sci , 13 :955 , 2022 |
| Abstract : Mishra_2022_Chem.Sci_13_955 |
| ESTHER : Mishra_2022_Chem.Sci_13_955 |
| PubMedSearch : Mishra_2022_Chem.Sci_13_955 |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Engineered HaloTag variants for fluorescence lifetime multiplexing - Frei_2022_Nat.Methods_19_65 |
| Author(s) : Frei MS , Tarnawski M , Roberti MJ , Koch B , Hiblot J , Johnsson K |
| Ref : Nat Methods , 19 :65 , 2022 |
| Abstract : Frei_2022_Nat.Methods_19_65 |
| ESTHER : Frei_2022_Nat.Methods_19_65 |
| PubMedSearch : Frei_2022_Nat.Methods_19_65 |
| PubMedID: 34916672 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Kinetic and Structural Characterization of the Self-Labeling Protein Tags HaloTag7, SNAP-tag, and CLIP-tag - Wilhelm_2021_Biochemistry_60_2560 |
| Author(s) : Wilhelm J , Kuhn S , Tarnawski M , Gotthard G , Tunnermann J , Tanzer T , Karpenko J , Mertes N , Xue L , Uhrig U , Reinstein J , Hiblot J , Johnsson K |
| Ref : Biochemistry , 60 :2560 , 2021 |
| Abstract : Wilhelm_2021_Biochemistry_60_2560 |
| ESTHER : Wilhelm_2021_Biochemistry_60_2560 |
| PubMedSearch : Wilhelm_2021_Biochemistry_60_2560 |
| PubMedID: 34339177 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Stabilization of Haloalkane Dehalogenase Structure by Interfacial Interaction with Ionic Liquids - Shaposhnikova_2021_Crystals_11_1052 |
| Author(s) : Shaposhnikova A , Kuty M , Chaloupkova R , Damborsky J , Smatanova IK , Minofar B , Prudnikova T |
| Ref : Crystals , 11 :1052 , 2021 |
| Abstract : Shaposhnikova_2021_Crystals_11_1052 |
| ESTHER : Shaposhnikova_2021_Crystals_11_1052 |
| PubMedSearch : Shaposhnikova_2021_Crystals_11_1052 |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : The HaloTag as a general scaffold for far-red tunable chemigenetic indicators - Deo_2021_Nat.Chem.Biol_17_718 |
| Author(s) : Deo C , Abdelfattah AS , Bhargava HK , Berro AJ , Falco N , Farrants H , Moeyaert B , Chupanova M , Lavis LD , Schreiter ER |
| Ref : Nat Chemical Biology , 17 :718 , 2021 |
| Abstract : Deo_2021_Nat.Chem.Biol_17_718 |
| ESTHER : Deo_2021_Nat.Chem.Biol_17_718 |
| PubMedSearch : Deo_2021_Nat.Chem.Biol_17_718 |
| PubMedID: 33795886 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : HaloTag Engineering for Enhanced Fluorogenicity and Kinetics with a Styrylpyridium Dye - Miro-Vinyals_2021_Chembiochem_22_3398 |
| Author(s) : Miro-Vinyals C , Stein A , Fischer S , Ward TR , Deliz Liang A |
| Ref : Chembiochem , 22 :3398 , 2021 |
| Abstract : Miro-Vinyals_2021_Chembiochem_22_3398 |
| ESTHER : Miro-Vinyals_2021_Chembiochem_22_3398 |
| PubMedSearch : Miro-Vinyals_2021_Chembiochem_22_3398 |
| PubMedID: 34609782 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers - Markova_2021_ACS.Catal_11_12864 |
| Author(s) : Markova K , Kunka A , Chmelova K , Havlasek M , Babkova P , Marques SM , Vasina M , Planas-Iglesias J , Chaloupkova R , Bednar D , Prokop Z , Damborsky J , Marek M |
| Ref : ACS Catal , 11 :12864 , 2021 |
| Abstract : Markova_2021_ACS.Catal_11_12864 |
| ESTHER : Markova_2021_ACS.Catal_11_12864 |
| PubMedSearch : Markova_2021_ACS.Catal_11_12864 |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Decoding the intricate network of molecular interactions of a hyperstable engineered biocatalyst - Markova_2020_Chem.Sci_11_11162 |
| Author(s) : Markova K , Chmelova K , Marques SM , Carpentier P , Bednar D , Damborsky J , Marek M |
| Ref : Chem Sci , 11 :11162 , 2020 |
| Abstract : Markova_2020_Chem.Sci_11_11162 |
| ESTHER : Markova_2020_Chem.Sci_11_11162 |
| PubMedSearch : Markova_2020_Chem.Sci_11_11162 |
| PubMedID: 34094357 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Accurate measurement of fast endocytic recycling kinetics in real time - Jonker_2020_J.Cell.Sci_133_ |
| Author(s) : Jonker CTH , Deo C , Zager PJ , Tkachuk AN , Weinstein AM , Rodriguez-Boulan E , Lavis LD , Schreiner R |
| Ref : Journal of Cell Science , 133 : , 2020 |
| Abstract : Jonker_2020_J.Cell.Sci_133_ |
| ESTHER : Jonker_2020_J.Cell.Sci_133_ |
| PubMedSearch : Jonker_2020_J.Cell.Sci_133_ |
| PubMedID: 31843759 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : AgHalo: A Facile Fluorogenic Sensor to Detect Drug-Induced Proteome Stress - Liu_2017_Angew.Chem.Int.Ed.Engl_56_8672 |
| Author(s) : Liu Y , Fares M , Dunham NP , Gao Z , Miao K , Jiang X , Bollinger SS , Boal AK , Zhang X |
| Ref : Angew Chem Int Ed Engl , 56 :8672 , 2017 |
| Abstract : Liu_2017_Angew.Chem.Int.Ed.Engl_56_8672 |
| ESTHER : Liu_2017_Angew.Chem.Int.Ed.Engl_56_8672 |
| PubMedSearch : Liu_2017_Angew.Chem.Int.Ed.Engl_56_8672 |
| PubMedID: 28557281 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Structure-guided synthesis of a protein-based fluorescent sensor for alkyl halides - Kang_2017_Chem.Commun.(Camb)_53_9226 |
| Author(s) : Kang MG , Lee H , Kim BH , Dunbayev Y , Seo JK , Lee C , Rhee HW |
| Ref : Chem Commun (Camb) , 53 :9226 , 2017 |
| Abstract : Kang_2017_Chem.Commun.(Camb)_53_9226 |
| ESTHER : Kang_2017_Chem.Commun.(Camb)_53_9226 |
| PubMedSearch : Kang_2017_Chem.Commun.(Camb)_53_9226 |
| PubMedID: 28766590 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : The Cation-pi Interaction Enables a Halo-Tag Fluorogenic Probe for Fast No-Wash Live Cell Imaging and Gel-Free Protein Quantification - Liu_2017_Biochemistry_56_1585 |
| Author(s) : Liu Y , Miao K , Dunham NP , Liu H , Fares M , Boal AK , Li X , Zhang X |
| Ref : Biochemistry , 56 :1585 , 2017 |
| Abstract : Liu_2017_Biochemistry_56_1585 |
| ESTHER : Liu_2017_Biochemistry_56_1585 |
| PubMedSearch : Liu_2017_Biochemistry_56_1585 |
| PubMedID: 28221782 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants - Bednar_2015_PLoS.Comput.Biol_11_e1004556 |
| Author(s) : Bednar D , Beerens K , Sebestova E , Bendl J , Khare S , Chaloupkova R , Prokop Z , Brezovsky J , Baker D , Damborsky J |
| Ref : PLoS Comput Biol , 11 :e1004556 , 2015 |
| Abstract : Bednar_2015_PLoS.Comput.Biol_11_e1004556 |
| ESTHER : Bednar_2015_PLoS.Comput.Biol_11_e1004556 |
| PubMedSearch : Bednar_2015_PLoS.Comput.Biol_11_e1004556 |
| PubMedID: 26529612 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Balancing the stability-activity trade-off by fine-tuning dehalogenase access tunnels - Liskova_2015_ChemCatChem_7_648 |
| Author(s) : Liskova V , Bednar D , Prudnikova T , Rezacova P , Koudelakova T , Sebestova E , Kuta-Smatanova I , Brezovsky J , Chaloupkova R , Damborsky J |
| Ref : ChemCatChem , 7 :648 , 2015 |
| Abstract : Liskova_2015_ChemCatChem_7_648 |
| ESTHER : Liskova_2015_ChemCatChem_7_648 |
| PubMedSearch : Liskova_2015_ChemCatChem_7_648 |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Crystallographic analysis of 1,2,3-trichloropropane biodegradation by the haloalkane dehalogenase DhaA31 - Lahoda_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_209 |
| Author(s) : Lahoda M , Mesters JR , Stsiapanava A , Chaloupkova R , Kuty M , Damborsky J , Kuta Smatanova I |
| Ref : Acta Crystallographica D Biol Crystallogr , 70 :209 , 2014 |
| Abstract : Lahoda_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_209 |
| ESTHER : Lahoda_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_209 |
| PubMedSearch : Lahoda_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_209 |
| PubMedID: 24531456 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Dynamics and hydration explain failed functional transformation in dehalogenase design - Sykora_2014_Nat.Chem.Biol_10_428 |
| Author(s) : Sykora J , Brezovsky J , Koudelakova T , Lahoda M , Fortova A , Chernovets T , Chaloupkova R , Stepankova V , Prokop Z , Smatanova IK , Hof M , Damborsky J |
| Ref : Nat Chemical Biology , 10 :428 , 2014 |
| Abstract : Sykora_2014_Nat.Chem.Biol_10_428 |
| ESTHER : Sykora_2014_Nat.Chem.Biol_10_428 |
| PubMedSearch : Sykora_2014_Nat.Chem.Biol_10_428 |
| PubMedID: 24727901 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : A bidirectional system for the dynamic small molecule control of intracellular fusion proteins - Neklesa_2013_ACS.Chem.Biol_8_2293 |
| Author(s) : Neklesa TK , Noblin DJ , Kuzin AP , Lew S , Seetharaman J , Acton TB , Kornhaber GJ , Xiao R , Montelione GT , Tong L , Crews CM |
| Ref : ACS Chemical Biology , 8 :2293 , 2013 |
| Abstract : Neklesa_2013_ACS.Chem.Biol_8_2293 |
| ESTHER : Neklesa_2013_ACS.Chem.Biol_8_2293 |
| PubMedSearch : Neklesa_2013_ACS.Chem.Biol_8_2293 |
| PubMedID: 23978068 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Engineering enzyme stability and resistance to an organic cosolvent by modification of residues in the access tunnel - Koudelakova_2013_Angew.Chem.Int.Ed.Engl_52_1959 |
| Author(s) : Koudelakova T , Chaloupkova R , Brezovsky J , Prokop Z , Sebestova E , Hesseler M , Khabiri M , Plevaka M , Kulik D , Kuta Smatanova I , Rezacova P , Ettrich R , Bornscheuer UT , Damborsky J |
| Ref : Angew Chem Int Ed Engl , 52 :1959 , 2013 |
| Abstract : Koudelakova_2013_Angew.Chem.Int.Ed.Engl_52_1959 |
| ESTHER : Koudelakova_2013_Angew.Chem.Int.Ed.Engl_52_1959 |
| PubMedSearch : Koudelakova_2013_Angew.Chem.Int.Ed.Engl_52_1959 |
| PubMedID: 23303607 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Expansion of access tunnels and active-site cavities influence activity of haloalkane dehalogenases in organic cosolvents - Stepankova_2013_Chembiochem_14_890 |
| Author(s) : Stepankova V , Khabiri M , Brezovsky J , Pavelka A , Sykora J , Amaro M , Minofar B , Prokop Z , Hof M , Ettrich R , Chaloupkova R , Damborsky J |
| Ref : Chembiochem , 14 :890 , 2013 |
| Abstract : Stepankova_2013_Chembiochem_14_890 |
| ESTHER : Stepankova_2013_Chembiochem_14_890 |
| PubMedSearch : Stepankova_2013_Chembiochem_14_890 |
| PubMedID: 23564727 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Substrate specificity of haloalkane dehalogenases - Koudelakova_2011_Biochem.J_435_345 |
| Author(s) : Koudelakova T , Chovancova E , Brezovsky J , Monincova M , Fortova A , Jarkovsky J , Damborsky J |
| Ref : Biochemical Journal , 435 :345 , 2011 |
| Abstract : Koudelakova_2011_Biochem.J_435_345 |
| ESTHER : Koudelakova_2011_Biochem.J_435_345 |
| PubMedSearch : Koudelakova_2011_Biochem.J_435_345 |
| PubMedID: 21294712 |
| Gene_locus related to this paper: agrtu-DHAA , brael-e2rv62 , braja-dhaa , myctu-linb , myctu-Rv1833c , rhoba-DHLA , rhoso-halo1 , sphpi-linb , xanau-halo1 |
| Title : Crystallization and crystallographic analysis of the Rhodococcus rhodochrous NCIMB 13064 DhaA mutant DhaA31 and its complex with 1,2,3-trichloropropane - Lahoda_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_397 |
| Author(s) : Lahoda M , Chaloupkova R , Stsiapanava A , Damborsky J , Kuta Smatanova I |
| Ref : Acta Crystallographica Sect F Struct Biol Cryst Commun , 67 :397 , 2011 |
| Abstract : Lahoda_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_397 |
| ESTHER : Lahoda_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_397 |
| PubMedSearch : Lahoda_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_397 |
| PubMedID: 21393851 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Crystallization and preliminary X-ray diffraction analysis of the wild-type haloalkane dehalogenase DhaA and its variant DhaA13 complexed with different ligands - Stsiapanava_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_253 |
| Author(s) : Stsiapanava A , Chaloupkova R , Fortova A , Brynda J , Weiss MS , Damborsky J , Smatanova IK |
| Ref : Acta Crystallographica Sect F Struct Biol Cryst Commun , 67 :253 , 2011 |
| Abstract : Stsiapanava_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_253 |
| ESTHER : Stsiapanava_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_253 |
| PubMedSearch : Stsiapanava_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_253 |
| PubMedID: 21301099 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Atomic resolution studies of haloalkane dehalogenases DhaA04, DhaA14 and DhaA15 with engineered access tunnels - Stsiapanava_2010_Acta.Crystallogr.D.Biol.Crystallogr_66_962 |
| Author(s) : Stsiapanava A , Dohnalek J , Gavira JA , Kuty M , Koudelakova T , Damborsky J , Kuta Smatanova I |
| Ref : Acta Crystallographica D Biol Crystallogr , 66 :962 , 2010 |
| Abstract : Stsiapanava_2010_Acta.Crystallogr.D.Biol.Crystallogr_66_962 |
| ESTHER : Stsiapanava_2010_Acta.Crystallogr.D.Biol.Crystallogr_66_962 |
| PubMedSearch : Stsiapanava_2010_Acta.Crystallogr.D.Biol.Crystallogr_66_962 |
| PubMedID: 20823547 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Pathways and mechanisms for product release in the engineered haloalkane dehalogenases explored using classical and random acceleration molecular dynamics simulations - Klvana_2009_J.Mol.Biol_392_1339 |
| Author(s) : Klvana M , Pavlova M , Koudelakova T , Chaloupkova R , Dvorak P , Prokop Z , Stsiapanava A , Kuty M , Kuta-Smatanova I , Dohnalek J , Kulhanek P , Wade RC , Damborsky J |
| Ref : Journal of Molecular Biology , 392 :1339 , 2009 |
| Abstract : Klvana_2009_J.Mol.Biol_392_1339 |
| ESTHER : Klvana_2009_J.Mol.Biol_392_1339 |
| PubMedSearch : Klvana_2009_J.Mol.Biol_392_1339 |
| PubMedID: 19577578 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Crystals of DhaA mutants from Rhodococcus rhodochrous NCIMB 13064 diffracted to ultrahigh resolution: crystallization and preliminary diffraction analysis - Stsiapanava_2008_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_64_137 |
| Author(s) : Stsiapanava A , Koudelakova T , Lapkouski M , Pavlova M , Damborsky J , Smatanova IK |
| Ref : Acta Crystallographica Sect F Struct Biol Cryst Commun , 64 :137 , 2008 |
| Abstract : Stsiapanava_2008_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_64_137 |
| ESTHER : Stsiapanava_2008_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_64_137 |
| PubMedSearch : Stsiapanava_2008_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_64_137 |
| PubMedID: 18259069 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Biodegradation of 1,2,3-trichloropropane through directed evolution and heterologous expression of a haloalkane dehalogenase gene - Bosma_2002_Appl.Environ.Microbiol_68_3582 |
| Author(s) : Bosma T , Damborsky J , Stucki G , Janssen DB |
| Ref : Applied Environmental Microbiology , 68 :3582 , 2002 |
| Abstract : Bosma_2002_Appl.Environ.Microbiol_68_3582 |
| ESTHER : Bosma_2002_Appl.Environ.Microbiol_68_3582 |
| PubMedSearch : Bosma_2002_Appl.Environ.Microbiol_68_3582 |
| PubMedID: 12089046 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Roles of horizontal gene transfer and gene integration in evolution of 1,3-dichloropropene- and 1,2-dibromoethane-degradative pathways - Poelarends_2000_J.Bacteriol_182_2191 |
| Author(s) : Poelarends GJ , Kulakov LA , Larkin MJ , van Hylckama Vlieg JE , Janssen DB |
| Ref : Journal of Bacteriology , 182 :2191 , 2000 |
| Abstract : Poelarends_2000_J.Bacteriol_182_2191 |
| ESTHER : Poelarends_2000_J.Bacteriol_182_2191 |
| PubMedSearch : Poelarends_2000_J.Bacteriol_182_2191 |
| PubMedID: 10735862 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Haloalkane dehalogenases: structure of a Rhodococcus enzyme - Newman_1999_Biochemistry_38_16105 |
| Author(s) : Newman J , Peat TS , Richard R , Kan L , Swanson PE , Affholter JA , Holmes IH , Schindler JF , Unkefer CJ , Terwilliger TC |
| Ref : Biochemistry , 38 :16105 , 1999 |
| Abstract : Newman_1999_Biochemistry_38_16105 |
| ESTHER : Newman_1999_Biochemistry_38_16105 |
| PubMedSearch : Newman_1999_Biochemistry_38_16105 |
| PubMedID: 10587433 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Degradation of 1,3-dichloropropene by pseudomonas cichorii 170 - Poelarends_1998_Appl.Environ.Microbiol_64_2931 |
| Author(s) : Poelarends GJ , Wilkens M , Larkin MJ , van Elsas JD , Janssen DB |
| Ref : Applied Environmental Microbiology , 64 :2931 , 1998 |
| Abstract : Poelarends_1998_Appl.Environ.Microbiol_64_2931 |
| ESTHER : Poelarends_1998_Appl.Environ.Microbiol_64_2931 |
| PubMedSearch : Poelarends_1998_Appl.Environ.Microbiol_64_2931 |
| PubMedID: 9687453 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064 - Kulakova_1997_Microbiology_143 ( Pt 1)_109 |
| Author(s) : Kulakova AN , Larkin MJ , Kulakov LA |
| Ref : Microbiology , 143 ( Pt 1) :109 , 1997 |
| Abstract : Kulakova_1997_Microbiology_143 ( Pt 1)_109 |
| ESTHER : Kulakova_1997_Microbiology_143 ( Pt 1)_109 |
| PubMedSearch : Kulakova_1997_Microbiology_143 ( Pt 1)_109 |
| PubMedID: 9025284 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Haloalkane degradation and assimilation by Rhodococcus rhodochrous NCIMB 13064 - Curragh_1994_Microbiology_140 ( Pt 6)_1433 |
| Author(s) : Curragh H , Flynn O , Larkin MJ , Stafford TM , Hamilton JT , Harper DB |
| Ref : Microbiology , 140 ( Pt 6) :1433 , 1994 |
| Abstract : Curragh_1994_Microbiology_140 ( Pt 6)_1433 |
| ESTHER : Curragh_1994_Microbiology_140 ( Pt 6)_1433 |
| PubMedSearch : Curragh_1994_Microbiology_140 ( Pt 6)_1433 |
| PubMedID: 8081504 |
| Gene_locus related to this paper: rhoso-halo1 |