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| Title : Accurate prediction of protein structures and interactions using a three-track neural network - Baek_2021_Science_373_871 |
| Author(s) : Baek M , DiMaio F , Anishchenko I , Dauparas J , Ovchinnikov S , Lee GR , Wang J , Cong Q , Kinch LN , Schaeffer RD , Millan C , Park H , Adams C , Glassman CR , DeGiovanni A , Pereira JH , Rodrigues AV , van Dijk AA , Ebrecht AC , Opperman DJ , Sagmeister T , Buhlheller C , Pavkov-Keller T , Rathinaswamy MK , Dalwadi U , Yip CK , Burke JE , Garcia KC , Grishin NV , Adams PD , Read RJ , Baker D |
| Ref : Science , 373 :871 , 2021 |
| Abstract : Baek_2021_Science_373_871 |
| ESTHER : Baek_2021_Science_373_871 |
| PubMedSearch : Baek_2021_Science_373_871 |
| PubMedID: 34282049 |
| Title : Catalytic efficiencies of directly evolved phosphotriesterase variants with structurally different organophosphorus compounds in vitro - Goldsmith_2016_Arch.Toxicol_90_2711 |
| Author(s) : Goldsmith M , Eckstein S , Ashani Y , Greisen P, Jr. , Leader H , Sussman JL , Aggarwal N , Ovchinnikov S , Tawfik DS , Baker D , Thiermann H , Worek F |
| Ref : Archives of Toxicology , 90 :2711 , 2016 |
| Abstract : Goldsmith_2016_Arch.Toxicol_90_2711 |
| ESTHER : Goldsmith_2016_Arch.Toxicol_90_2711 |
| PubMedSearch : Goldsmith_2016_Arch.Toxicol_90_2711 |
| PubMedID: 26612364 |
| Title : FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants - Bednar_2015_PLoS.Comput.Biol_11_e1004556 |
| Author(s) : Bednar D , Beerens K , Sebestova E , Bendl J , Khare S , Chaloupkova R , Prokop Z , Brezovsky J , Baker D , Damborsky J |
| Ref : PLoS Comput Biol , 11 :e1004556 , 2015 |
| Abstract : Bednar_2015_PLoS.Comput.Biol_11_e1004556 |
| ESTHER : Bednar_2015_PLoS.Comput.Biol_11_e1004556 |
| PubMedSearch : Bednar_2015_PLoS.Comput.Biol_11_e1004556 |
| PubMedID: 26529612 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Design of activated serine-containing catalytic triads with atomic-level accuracy - Rajagopalan_2014_Nat.Chem.Biol_10_386 |
| Author(s) : Rajagopalan S , Wang C , Yu K , Kuzin AP , Richter F , Lew S , Miklos AE , Matthews ML , Seetharaman J , Su M , Hunt JF , Cravatt BF , Baker D |
| Ref : Nat Chemical Biology , 10 :386 , 2014 |
| Abstract : Rajagopalan_2014_Nat.Chem.Biol_10_386 |
| ESTHER : Rajagopalan_2014_Nat.Chem.Biol_10_386 |
| PubMedSearch : Rajagopalan_2014_Nat.Chem.Biol_10_386 |
| PubMedID: 24705591 |
| Title : Complete Genome Sequence of the Model Rhizosphere Strain Azospirillum brasilense Az39, Successfully Applied in Agriculture - Rivera_2014_Genome.Announc_2_e00683 |
| Author(s) : Rivera D , Revale S , Molina R , Gualpa J , Puente M , Maroniche G , Paris G , Baker D , Clavijo B , McLay K , Spaepen S , Perticari A , Vazquez M , Wisniewski-Dye F , Watkins C , Martinez-Abarca F , Vanderleyden J , Cassan F |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Rivera_2014_Genome.Announc_2_e00683 |
| ESTHER : Rivera_2014_Genome.Announc_2_e00683 |
| PubMedSearch : Rivera_2014_Genome.Announc_2_e00683 |
| PubMedID: 25059863 |
| Gene_locus related to this paper: azobr-a0a060dyj0 |
| Title : Engineering v-type nerve agents detoxifying enzymes using computationally focused libraries - Cherny_2013_ACS.Chem.Biol_8_2394 |
| Author(s) : Cherny I , Greisen P, Jr. , Ashani Y , Khare SD , Oberdorfer G , Leader H , Baker D , Tawfik DS |
| Ref : ACS Chemical Biology , 8 :2394 , 2013 |
| Abstract : Cherny_2013_ACS.Chem.Biol_8_2394 |
| ESTHER : Cherny_2013_ACS.Chem.Biol_8_2394 |
| PubMedSearch : Cherny_2013_ACS.Chem.Biol_8_2394 |
| PubMedID: 24041203 |
| Title : Computational design of catalytic dyads and oxyanion holes for ester hydrolysis - Richter_2012_J.Am.Chem.Soc_134_16197 |
| Author(s) : Richter F , Blomberg R , Khare SD , Kiss G , Kuzin AP , Smith AJ , Gallaher J , Pianowski Z , Helgeson RC , Grjasnow A , Xiao R , Seetharaman J , Su M , Vorobiev S , Lew S , Forouhar F , Kornhaber GJ , Hunt JF , Montelione GT , Tong L , Houk KN , Hilvert D , Baker D |
| Ref : Journal of the American Chemical Society , 134 :16197 , 2012 |
| Abstract : Richter_2012_J.Am.Chem.Soc_134_16197 |
| ESTHER : Richter_2012_J.Am.Chem.Soc_134_16197 |
| PubMedSearch : Richter_2012_J.Am.Chem.Soc_134_16197 |
| PubMedID: 22871159 |
| Title : Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis - Khare_2012_Nat.Chem.Biol_8_294 |
| Author(s) : Khare SD , Kipnis Y , Greisen P, Jr. , Takeuchi R , Ashani Y , Goldsmith M , Song Y , Gallaher JL , Silman I , Leader H , Sussman JL , Stoddard BL , Tawfik DS , Baker D |
| Ref : Nat Chemical Biology , 8 :294 , 2012 |
| Abstract : Khare_2012_Nat.Chem.Biol_8_294 |
| ESTHER : Khare_2012_Nat.Chem.Biol_8_294 |
| PubMedSearch : Khare_2012_Nat.Chem.Biol_8_294 |
| PubMedID: 22306579 |
| Title : Complete genome sequence of the proteolytic Clostridium botulinum type A5 (B3') strain H04402 065 - Carter_2011_J.Bacteriol_193_2351 |
| Author(s) : Carter AT , Pearson BM , Crossman LC , Drou N , Heavens D , Baker D , Febrer M , Caccamo M , Grant KA , Peck MW |
| Ref : Journal of Bacteriology , 193 :2351 , 2011 |
| Abstract : Carter_2011_J.Bacteriol_193_2351 |
| ESTHER : Carter_2011_J.Bacteriol_193_2351 |
| PubMedSearch : Carter_2011_J.Bacteriol_193_2351 |
| PubMedID: 21378191 |
| Gene_locus related to this paper: clobh-pip |
| Title : Organophosphate-induced intermediate syndrome: aetiology and relationships with myopathy - Karalliedde_2006_Toxicol.Rev_25_1 |
| Author(s) : Karalliedde L , Baker D , Marrs TC |
| Ref : Toxicol Rev , 25 :1 , 2006 |
| Abstract : Karalliedde_2006_Toxicol.Rev_25_1 |
| ESTHER : Karalliedde_2006_Toxicol.Rev_25_1 |
| PubMedSearch : Karalliedde_2006_Toxicol.Rev_25_1 |
| PubMedID: 16856766 |