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| Title : Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen - Crouch_2020_Phytopathology_110_1180 |
| Author(s) : Crouch JA , Dawe A , Aerts A , Barry K , Churchill ACL , Grimwood J , Hillman BI , Milgroom MG , Pangilinan J , Smith M , Salamov A , Schmutz J , Yadav JS , Grigoriev IV , Nuss DL |
| Ref : Phytopathology , 110 :1180 , 2020 |
| Abstract : Crouch_2020_Phytopathology_110_1180 |
| ESTHER : Crouch_2020_Phytopathology_110_1180 |
| PubMedSearch : Crouch_2020_Phytopathology_110_1180 |
| PubMedID: 32207662 |
| Gene_locus related to this paper: crypa-a0a9p5chw8 |
| Title : Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery - Mondo_2019_Biotechnol.Biofuels_12_229 |
| Author(s) : Mondo SJ , Jimenez DJ , Hector RE , Lipzen A , Yan M , LaButti K , Barry K , van Elsas JD , Grigoriev IV , Nichols NN |
| Ref : Biotechnol Biofuels , 12 :229 , 2019 |
| Abstract : Mondo_2019_Biotechnol.Biofuels_12_229 |
| ESTHER : Mondo_2019_Biotechnol.Biofuels_12_229 |
| PubMedSearch : Mondo_2019_Biotechnol.Biofuels_12_229 |
| PubMedID: 31572496 |
| Gene_locus related to this paper: 9pezi-a0a5n5p0y9 , 9pezi-a0a5n5pg71 , 9pezi-a0a5n5ld08 |
| Title : Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales) - Urquhart_2018_Front.Microbiol_9_3058 |
| Author(s) : Urquhart AS , Mondo SJ , Makela MR , Hane JK , Wiebenga A , He G , Mihaltcheva S , Pangilinan J , Lipzen A , Barry K , de Vries RP , Grigoriev IV , Idnurm A |
| Ref : Front Microbiol , 9 :3058 , 2018 |
| Abstract : Urquhart_2018_Front.Microbiol_9_3058 |
| ESTHER : Urquhart_2018_Front.Microbiol_9_3058 |
| PubMedSearch : Urquhart_2018_Front.Microbiol_9_3058 |
| PubMedID: 30619145 |
| Gene_locus related to this paper: byssp-a0a443i770 , byssp-a0a443i5x3 , byssp-vdta1 |
| Title : Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi - Knapp_2018_Sci.Rep_8_6321 |
| Author(s) : Knapp DG , Nemeth JB , Barry K , Hainaut M , Henrissat B , Johnson J , Kuo A , Lim JHP , Lipzen A , Nolan M , Ohm RA , Tamas L , Grigoriev IV , Spatafora JW , Nagy LG , Kovacs GM |
| Ref : Sci Rep , 8 :6321 , 2018 |
| Abstract : Knapp_2018_Sci.Rep_8_6321 |
| ESTHER : Knapp_2018_Sci.Rep_8_6321 |
| PubMedSearch : Knapp_2018_Sci.Rep_8_6321 |
| PubMedID: 29679020 |
| Gene_locus related to this paper: 9pleo-a0a2v1dn29 , 9helo-a0a2v1c5l1 , 9pleo-a0a2v1dti3 , 9helo-a0a2v1bts1 , 9helo-a0a2v1cbe5 , 9pleo-a0a2v1cxz2 , 9pleo-a0a2v1d1n3 , 9pleo-a0a2v1db80 , 9pleo-a0a2v1ddg5 , 9pleo-a0a2v1dij1 , 9pleo-a0a2v1dp20 , 9pleo-a0a2v1e6x2 , 9pleo-a0a2v1ee64 , 9helo-a0a2v1cbn2 , 9helo-a0a2v1b581 , 9pleo-a0a2v1e5g2 , corcc-a0a2t2nt04 , 9helo-a0a2v1buk5 |
| Title : Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species - Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| Author(s) : Kjaerbolling I , Vesth TC , Frisvad JC , Nybo JL , Theobald S , Kuo A , Bowyer P , Matsuda Y , Mondo S , Lyhne EK , Kogle ME , Clum A , Lipzen A , Salamov A , Ngan CY , Daum C , Chiniquy J , Barry K , LaButti K , Haridas S , Simmons BA , Magnuson JK , Mortensen UH , Larsen TO , Grigoriev IV , Baker SE , Andersen MR |
| Ref : Proc Natl Acad Sci U S A , 115 :E753 , 2018 |
| Abstract : Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| ESTHER : Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| PubMedSearch : Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| PubMedID: 29317534 |
| Gene_locus related to this paper: 9euro-a0a0f8xhh7 , 9euro-a0a2t5ll04 , aspn1-nvfd |
| Title : Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels - Wu_2017_Appl.Microbiol.Biotechnol_101_2603 |
| Author(s) : Wu W , Davis RW , Tran-Gyamfi MB , Kuo A , LaButti K , Mihaltcheva S , Hundley H , Chovatia M , Lindquist E , Barry K , Grigoriev IV , Henrissat B , Gladden JM |
| Ref : Applied Microbiology & Biotechnology , 101 :2603 , 2017 |
| Abstract : Wu_2017_Appl.Microbiol.Biotechnol_101_2603 |
| ESTHER : Wu_2017_Appl.Microbiol.Biotechnol_101_2603 |
| PubMedSearch : Wu_2017_Appl.Microbiol.Biotechnol_101_2603 |
| PubMedID: 28078400 |
| Gene_locus related to this paper: 9pezi-a0a1y2u1s8 , 9pezi-a0a1y2x077 , 9pezi-a0a1y2vv92 , 9pezi-a0a1y2txs8 , 9pezi-a0a1y2wzb7 , 9pezi-a0a1y2ufj7 , 9pezi-a0a1y2vvc9 , 9pezi-a0a1y2w3w4 |
| Title : Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria - Sipos_2017_Nat.Ecol.Evol_1_1931 |
| Author(s) : Sipos G , Prasanna AN , Walter MC , O'Connor E , Balint B , Krizsan K , Kiss B , Hess J , Varga T , Slot J , Riley R , Boka B , Rigling D , Barry K , Lee J , Mihaltcheva S , LaButti K , Lipzen A , Waldron R , Moloney NM , Sperisen C , Kredics L , Vagvolgyi C , Patrignani A , Fitzpatrick D , Nagy I , Doyle S , Anderson JB , Grigoriev IV , Guldener U , Munsterkotter M , Nagy LG |
| Ref : Nat Ecol Evol , 1 :1931 , 2017 |
| Abstract : Sipos_2017_Nat.Ecol.Evol_1_1931 |
| ESTHER : Sipos_2017_Nat.Ecol.Evol_1_1931 |
| PubMedSearch : Sipos_2017_Nat.Ecol.Evol_1_1931 |
| PubMedID: 29085064 |
| Gene_locus related to this paper: armos-armb |
| Title : Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds - Hwang_2016_Genome.Announc_4_e01226 |
| Author(s) : Hwang C , Copeland A , Lucas S , Lapidus A , Barry K , Detter JC , Glavina Del Rio T , Hammon N , Israni S , Dalin E , Tice H , Pitluck S , Chertkov O , Brettin T , Bruce D , Han C , Schmutz J , Larimer F , Land ML , Hauser L , Kyrpides N , Mikhailova N , Ye Q , Zhou J , Richardson P , Fields MW |
| Ref : Genome Announc , 4 : , 2016 |
| Abstract : Hwang_2016_Genome.Announc_4_e01226 |
| ESTHER : Hwang_2016_Genome.Announc_4_e01226 |
| PubMedSearch : Hwang_2016_Genome.Announc_4_e01226 |
| PubMedID: 27811105 |
| Gene_locus related to this paper: alkmq-a6tu78 |
| Title : A reference genome for common bean and genome-wide analysis of dual domestications - Schmutz_2014_Nat.Genet_46_707 |
| Author(s) : Schmutz J , McClean PE , Mamidi S , Wu GA , Cannon SB , Grimwood J , Jenkins J , Shu S , Song Q , Chavarro C , Torres-Torres M , Geffroy V , Moghaddam SM , Gao D , Abernathy B , Barry K , Blair M , Brick MA , Chovatia M , Gepts P , Goodstein DM , Gonzales M , Hellsten U , Hyten DL , Jia G , Kelly JD , Kudrna D , Lee R , Richard MM , Miklas PN , Osorno JM , Rodrigues J , Thareau V , Urrea CA , Wang M , Yu Y , Zhang M , Wing RA , Cregan PB , Rokhsar DS , Jackson SA |
| Ref : Nat Genet , 46 :707 , 2014 |
| Abstract : Schmutz_2014_Nat.Genet_46_707 |
| ESTHER : Schmutz_2014_Nat.Genet_46_707 |
| PubMedSearch : Schmutz_2014_Nat.Genet_46_707 |
| PubMedID: 24908249 |
| Gene_locus related to this paper: phavu-v7azs2 , phavu-v7awu7 , phavu-v7bpt6 , phavu-v7b6k3 , phavu-v7cry4 |
| Title : Reference genome sequence of the model plant Setaria - Bennetzen_2012_Nat.Biotechnol_30_555 |
| Author(s) : Bennetzen JL , Schmutz J , Wang H , Percifield R , Hawkins J , Pontaroli AC , Estep M , Feng L , Vaughn JN , Grimwood J , Jenkins J , Barry K , Lindquist E , Hellsten U , Deshpande S , Wang X , Wu X , Mitros T , Triplett J , Yang X , Ye CY , Mauro-Herrera M , Wang L , Li P , Sharma M , Sharma R , Ronald PC , Panaud O , Kellogg EA , Brutnell TP , Doust AN , Tuskan GA , Rokhsar D , Devos KM |
| Ref : Nat Biotechnol , 30 :555 , 2012 |
| Abstract : Bennetzen_2012_Nat.Biotechnol_30_555 |
| ESTHER : Bennetzen_2012_Nat.Biotechnol_30_555 |
| PubMedSearch : Bennetzen_2012_Nat.Biotechnol_30_555 |
| PubMedID: 22580951 |
| Gene_locus related to this paper: setit-k3xwe0 , setit-k3xfs7 , setit-k3yh36 , setit-k3zes3 , setit-k3zlj8 , setvi-a0a4u6wd58 , setit-a0a368qif6 , setit-a0a368sru6 , setit-a0a368q9x4 , setit-k3zri0 , setit-k3ysv0 , setit-k3xj49 , setit-k4ac30 |
| Title : Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize - Suzuki_2012_BMC.Genomics_13_444 |
| Author(s) : Suzuki H , MacDonald J , Syed K , Salamov A , Hori C , Aerts A , Henrissat B , Wiebenga A , vanKuyk PA , Barry K , Lindquist E , LaButti K , Lapidus A , Lucas S , Coutinho P , Gong Y , Samejima M , Mahadevan R , Abou-Zaid M , de Vries RP , Igarashi K , Yadav JS , Grigoriev IV , Master ER |
| Ref : BMC Genomics , 13 :444 , 2012 |
| Abstract : Suzuki_2012_BMC.Genomics_13_444 |
| ESTHER : Suzuki_2012_BMC.Genomics_13_444 |
| PubMedSearch : Suzuki_2012_BMC.Genomics_13_444 |
| PubMedID: 22937793 |
| Gene_locus related to this paper: phacs-k5whx2 , phacs-k5v2s8 , phacs-k5v5r2 , phacs-k5vyk5 , phacs-k5vzf8 , phacs-k5wbu9 , phacs-k5wc10 , phacs-k5wpw0 , phacs-k5wzn6 , phacs-k5x1t8 , phacs-k5x5g6 , phacs-k5x5p4 |
| Title : Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614 - Coleman_2011_J.Bacteriol_193_3399 |
| Author(s) : Coleman NV , Wilson NL , Barry K , Brettin TS , Bruce DC , Copeland A , Dalin E , Detter JC , Del Rio TG , Goodwin LA , Hammon NM , Han S , Hauser LJ , Israni S , Kim E , Kyrpides N , Land ML , Lapidus A , Larimer FW , Lucas S , Pitluck S , Richardson P , Schmutz J , Tapia R , Thompson S , Tice HN , Spain JC , Gossett JG , Mattes TE |
| Ref : Journal of Bacteriology , 193 :3399 , 2011 |
| Abstract : Coleman_2011_J.Bacteriol_193_3399 |
| ESTHER : Coleman_2011_J.Bacteriol_193_3399 |
| PubMedSearch : Coleman_2011_J.Bacteriol_193_3399 |
| PubMedID: 21551312 |
| Gene_locus related to this paper: nocsj-a1sil5 |
| Title : Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus - Tang_2011_BMC.Genomics_12_334 |
| Author(s) : Tang KH , Barry K , Chertkov O , Dalin E , Han CS , Hauser LJ , Honchak BM , Karbach LE , Land ML , Lapidus A , Larimer FW , Mikhailova N , Pitluck S , Pierson BK , Blankenship RE |
| Ref : BMC Genomics , 12 :334 , 2011 |
| Abstract : Tang_2011_BMC.Genomics_12_334 |
| ESTHER : Tang_2011_BMC.Genomics_12_334 |
| PubMedSearch : Tang_2011_BMC.Genomics_12_334 |
| PubMedID: 21714912 |
| Gene_locus related to this paper: chlaa-a9we32 |
| Title : Complete genome sequence of Methanocorpusculum labreanum type strain Z - Anderson_2009_Stand.Genomic.Sci_1_197 |
| Author(s) : Anderson IJ , Sieprawska-Lupa M , Goltsman E , Lapidus A , Copeland A , Glavina Del Rio T , Tice H , Dalin E , Barry K , Pitluck S , Hauser L , Land M , Lucas S , Richardson P , Whitman WB , Kyrpides NC |
| Ref : Stand Genomic Sci , 1 :197 , 2009 |
| Abstract : Anderson_2009_Stand.Genomic.Sci_1_197 |
| ESTHER : Anderson_2009_Stand.Genomic.Sci_1_197 |
| PubMedSearch : Anderson_2009_Stand.Genomic.Sci_1_197 |
| PubMedID: 21304657 |
| Gene_locus related to this paper: metlz-a2sqw3 , metlz-a2su60 , metlz-a2su61 , metlz-a2su62 |
| Title : The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota - Anderson_2009_BMC.Genomics_10_145 |
| Author(s) : Anderson IJ , Dharmarajan L , Rodriguez J , Hooper S , Porat I , Ulrich LE , Elkins JG , Mavromatis K , Sun H , Land M , Lapidus A , Lucas S , Barry K , Huber H , Zhulin IB , Whitman WB , Mukhopadhyay B , Woese C , Bristow J , Kyrpides N |
| Ref : BMC Genomics , 10 :145 , 2009 |
| Abstract : Anderson_2009_BMC.Genomics_10_145 |
| ESTHER : Anderson_2009_BMC.Genomics_10_145 |
| PubMedSearch : Anderson_2009_BMC.Genomics_10_145 |
| PubMedID: 19341479 |
| Title : Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1 - Anderson_2009_Stand.Genomic.Sci_1_189 |
| Author(s) : Anderson IJ , Sieprawska-Lupa M , Lapidus A , Nolan M , Copeland A , Glavina Del Rio T , Tice H , Dalin E , Barry K , Saunders E , Han C , Brettin T , Detter JC , Bruce D , Mikhailova N , Pitluck S , Hauser L , Land M , Lucas S , Richardson P , Whitman WB , Kyrpides NC |
| Ref : Stand Genomic Sci , 1 :189 , 2009 |
| Abstract : Anderson_2009_Stand.Genomic.Sci_1_189 |
| ESTHER : Anderson_2009_Stand.Genomic.Sci_1_189 |
| PubMedSearch : Anderson_2009_Stand.Genomic.Sci_1_189 |
| PubMedID: 21304656 |
| Title : Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1 - Anderson_2009_Stand.Genomic.Sci_1_183 |
| Author(s) : Anderson IJ , Sun H , Lapidus A , Copeland A , Glavina Del Rio T , Tice H , Dalin E , Lucas S , Barry K , Land M , Richardson P , Huber H , Kyrpides NC |
| Ref : Stand Genomic Sci , 1 :183 , 2009 |
| Abstract : Anderson_2009_Stand.Genomic.Sci_1_183 |
| ESTHER : Anderson_2009_Stand.Genomic.Sci_1_183 |
| PubMedSearch : Anderson_2009_Stand.Genomic.Sci_1_183 |
| PubMedID: 21304655 |
| Title : A korarchaeal genome reveals insights into the evolution of the Archaea - Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102 |
| Author(s) : Elkins JG , Podar M , Graham DE , Makarova KS , Wolf Y , Randau L , Hedlund BP , Brochier-Armanet C , Kunin V , Anderson I , Lapidus A , Goltsman E , Barry K , Koonin EV , Hugenholtz P , Kyrpides N , Wanner G , Richardson P , Keller M , Stetter KO |
| Ref : Proc Natl Acad Sci U S A , 105 :8102 , 2008 |
| Abstract : Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102 |
| ESTHER : Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102 |
| PubMedSearch : Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102 |
| PubMedID: 18535141 |
| Title : Genomic islands and the ecology and evolution of Prochlorococcus - Coleman_2006_Science_311_1768 |
| Author(s) : Coleman ML , Sullivan MB , Martiny AC , Steglich C , Barry K , DeLong EF , Chisholm SW |
| Ref : Science , 311 :1768 , 2006 |
| Abstract : Coleman_2006_Science_311_1768 |
| ESTHER : Coleman_2006_Science_311_1768 |
| PubMedSearch : Coleman_2006_Science_311_1768 |
| PubMedID: 16556843 |
| Gene_locus related to this paper: prom9-q31br4 , proma-q1pj71 , proma-q1pkh7 , proma-q1pkn9 , proma-q1pks4 |