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| Title : Finished Genome Sequence of Bacillus cereus Strain 03BB87, a Clinical Isolate with B. anthracis Virulence Genes - Johnson_2015_Genome.Announc_3_0 |
| Author(s) : Johnson SL , Minogue TD , Teshima H , Davenport KW , Shea AA , Miner HL , Wolcott MJ , Chain PS |
| Ref : Genome Announc , 3 : , 2015 |
| Abstract : Johnson_2015_Genome.Announc_3_0 |
| ESTHER : Johnson_2015_Genome.Announc_3_0 |
| PubMedSearch : Johnson_2015_Genome.Announc_3_0 |
| PubMedID: 25593267 |
| Gene_locus related to this paper: bacco-g2th77 , 9burk-a0a0d5v6j6 , 9burk-a0a0d5vg46 , bacmb-a0a0b6amr7 , 9gamm-a0a0b6d7n3 , 9gamm-a0a0e1n4r5 , 9gamm-c6yvf8 , 9burk-a0a0d5lcs9 |
| Title : Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor - Johnson_2015_Genome.Announc_3_ |
| Author(s) : Johnson SL , Bishop-Lilly KA , Ladner JT , Daligault HE , Davenport KW , Jaissle J , Frey KG , Koroleva GI , Bruce DC , Coyne SR , Broomall SM , Li PE , Teshima H , Gibbons HS , Palacios GF , Rosenzweig CN , Redden CL , Xu Y , Minogue TD , Chain PS |
| Ref : Genome Announc , 3 : , 2015 |
| Abstract : Johnson_2015_Genome.Announc_3_ |
| ESTHER : Johnson_2015_Genome.Announc_3_ |
| PubMedSearch : Johnson_2015_Genome.Announc_3_ |
| PubMedID: 25931592 |
| Title : Complete Genome Sequences of Two Escherichia coli O145:H28 Outbreak Strains of Food Origin - Cooper_2014_Genome.Announc_2_e00482 |
| Author(s) : Cooper KK , Mandrell RE , Louie JW , Korlach J , Clark TA , Parker CT , Huynh S , Chain PS , Ahmed S , Carter MQ |
| Ref : Genome Announc , 2 :e00482 , 2014 |
| Abstract : Cooper_2014_Genome.Announc_2_e00482 |
| ESTHER : Cooper_2014_Genome.Announc_2_e00482 |
| PubMedSearch : Cooper_2014_Genome.Announc_2_e00482 |
| PubMedID: 24855308 |
| Gene_locus related to this paper: ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 |
| Title : Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7 - Cooper_2014_BMC.Genomics_15_17 |
| Author(s) : Cooper KK , Mandrell RE , Louie JW , Korlach J , Clark TA , Parker CT , Huynh S , Chain PS , Ahmed S , Carter MQ |
| Ref : BMC Genomics , 15 :17 , 2014 |
| Abstract : Cooper_2014_BMC.Genomics_15_17 |
| ESTHER : Cooper_2014_BMC.Genomics_15_17 |
| PubMedSearch : Cooper_2014_BMC.Genomics_15_17 |
| PubMedID: 24410921 |
| Gene_locus related to this paper: ecoli-fes , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930 , ecoli-YfhR |
| Title : Draft Genome Sequence of Medium-Chain-Length Polyhydroxyalkanoate-Producing Pseudomonas putida Strain LS46 - Sharma_2013_Genome.Announc_1_e0015113 |
| Author(s) : Sharma PK , Fu J , Zhang X , Fristensky BW , Davenport K , Chain PS , Sparling R , Levin DB |
| Ref : Genome Announc , 1 :e0015113 , 2013 |
| Abstract : Sharma_2013_Genome.Announc_1_e0015113 |
| ESTHER : Sharma_2013_Genome.Announc_1_e0015113 |
| PubMedSearch : Sharma_2013_Genome.Announc_1_e0015113 |
| PubMedID: 23599293 |
| Gene_locus related to this paper: psepu-PIP , psepu-PP1500 , psepu-PP4249 , psepu-q9wwz4 |
| Title : Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome - Fitzsimons_2013_Genome.Res_23_878 |
| Author(s) : Fitzsimons MS , Novotny M , Lo CC , Dichosa AE , Yee-Greenbaum JL , Snook JP , Gu W , Chertkov O , Davenport KW , McMurry K , Reitenga KG , Daughton AR , He J , Johnson SL , Gleasner CD , Wills PL , Parson-Quintana B , Chain PS , Detter JC , Lasken RS , Han CS |
| Ref : Genome Res , 23 :878 , 2013 |
| Abstract : Fitzsimons_2013_Genome.Res_23_878 |
| ESTHER : Fitzsimons_2013_Genome.Res_23_878 |
| PubMedSearch : Fitzsimons_2013_Genome.Res_23_878 |
| PubMedID: 23493677 |
| Gene_locus related to this paper: 9stre-k0zi65 |
| Title : Genome Sequences of Two Klebsiella pneumoniae Isolates from Different Geographical Regions, Argentina (Strain JHCK1) and the United States (Strain VA360) - Xie_2013_Genome.Announc_1_e00168 |
| Author(s) : Xie G , Ramirez MS , Marshall SH , Hujer KM , Lo CC , Johnson S , Li PE , Davenport K , Endimiani A , Bonomo RA , Tolmasky ME , Chain PS |
| Ref : Genome Announc , 1 : , 2013 |
| Abstract : Xie_2013_Genome.Announc_1_e00168 |
| ESTHER : Xie_2013_Genome.Announc_1_e00168 |
| PubMedSearch : Xie_2013_Genome.Announc_1_e00168 |
| PubMedID: 23640195 |
| Gene_locus related to this paper: klep7-a6t9v6 , klep7-y1077 , klepn-a0a016qwx4 , klepn-w8uta0 |
| Title : Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T - Pester_2012_J.Bacteriol_194_6300 |
| Author(s) : Pester M , Brambilla E , Alazard D , Rattei T , Weinmaier T , Han J , Lucas S , Lapidus A , Cheng JF , Goodwin L , Pitluck S , Peters L , Ovchinnikova G , Teshima H , Detter JC , Han CS , Tapia R , Land ML , Hauser L , Kyrpides NC , Ivanova NN , Pagani I , Huntmann M , Wei CL , Davenport KW , Daligault H , Chain PS , Chen A , Mavromatis K , Markowitz V , Szeto E , Mikhailova N , Pati A , Wagner M , Woyke T , Ollivier B , Klenk HP , Spring S , Loy A |
| Ref : Journal of Bacteriology , 194 :6300 , 2012 |
| Abstract : Pester_2012_J.Bacteriol_194_6300 |
| ESTHER : Pester_2012_J.Bacteriol_194_6300 |
| PubMedSearch : Pester_2012_J.Bacteriol_194_6300 |
| PubMedID: 23105050 |
| Gene_locus related to this paper: desaj-i4dc82 , desmd-j7j1v2 , desod-g7wg97 , desaj-i4d5q8 |
| Title : Genome of Ochrobactrum anthropi ATCC 49188 T, a versatile opportunistic pathogen and symbiont of several eukaryotic hosts - Chain_2011_J.Bacteriol_193_4274 |
| Author(s) : Chain PS , Lang DM , Comerci DJ , Malfatti SA , Vergez LM , Shin M , Ugalde RA , Garcia E , Tolmasky ME |
| Ref : Journal of Bacteriology , 193 :4274 , 2011 |
| Abstract : Chain_2011_J.Bacteriol_193_4274 |
| ESTHER : Chain_2011_J.Bacteriol_193_4274 |
| PubMedSearch : Chain_2011_J.Bacteriol_193_4274 |
| PubMedID: 21685287 |
| Gene_locus related to this paper: ocha4-a6wvy4 , ocha4-a6x3i9 , ochan-a0a011ubk0 |
| Title : Complete genome sequence of the plant growth-promoting endophyte Burkholderia phytofirmans strain PsJN - Weilharter_2011_J.Bacteriol_193_3383 |
| Author(s) : Weilharter A , Mitter B , Shin MV , Chain PS , Nowak J , Sessitsch A |
| Ref : Journal of Bacteriology , 193 :3383 , 2011 |
| Abstract : Weilharter_2011_J.Bacteriol_193_3383 |
| ESTHER : Weilharter_2011_J.Bacteriol_193_3383 |
| PubMedSearch : Weilharter_2011_J.Bacteriol_193_3383 |
| PubMedID: 21551308 |
| Gene_locus related to this paper: parpj-b2t4x0 |
| Title : Genome of the cyanobacterium Microcoleus vaginatus FGP-2, a photosynthetic ecosystem engineer of arid land soil biocrusts worldwide - Starkenburg_2011_J.Bacteriol_193_4569 |
| Author(s) : Starkenburg SR , Reitenga KG , Freitas T , Johnson S , Chain PS , Garcia-Pichel F , Kuske CR |
| Ref : Journal of Bacteriology , 193 :4569 , 2011 |
| Abstract : Starkenburg_2011_J.Bacteriol_193_4569 |
| ESTHER : Starkenburg_2011_J.Bacteriol_193_4569 |
| PubMedSearch : Starkenburg_2011_J.Bacteriol_193_4569 |
| PubMedID: 21705610 |
| Gene_locus related to this paper: 9cyan-f5uj95 , 9cyan-f5umv4 , 9cyan-f5ulj8 |
| Title : The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth - Ayala-del-Rio_2010_Appl.Environ.Microbiol_76_2304 |
| Author(s) : Ayala-del-Rio HL , Chain PS , Grzymski JJ , Ponder MA , Ivanova N , Bergholz PW , Di Bartolo G , Hauser L , Land M , Bakermans C , Rodrigues D , Klappenbach J , Zarka D , Larimer F , Richardson P , Murray A , Thomashow M , Tiedje JM |
| Ref : Applied Environmental Microbiology , 76 :2304 , 2010 |
| Abstract : Ayala-del-Rio_2010_Appl.Environ.Microbiol_76_2304 |
| ESTHER : Ayala-del-Rio_2010_Appl.Environ.Microbiol_76_2304 |
| PubMedSearch : Ayala-del-Rio_2010_Appl.Environ.Microbiol_76_2304 |
| PubMedID: 20154119 |
| Gene_locus related to this paper: psya2-q4fu78 , psya2-q4fvr2 |
| Title : Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans - Sievert_2008_Appl.Environ.Microbiol_74_1145 |
| Author(s) : Sievert SM , Scott KM , Klotz MG , Chain PS , Hauser LJ , Hemp J , Hugler M , Land M , Lapidus A , Larimer FW , Lucas S , Malfatti SA , Meyer F , Paulsen IT , Ren Q , Simon J |
| Ref : Applied Environmental Microbiology , 74 :1145 , 2008 |
| Abstract : Sievert_2008_Appl.Environ.Microbiol_74_1145 |
| ESTHER : Sievert_2008_Appl.Environ.Microbiol_74_1145 |
| PubMedSearch : Sievert_2008_Appl.Environ.Microbiol_74_1145 |
| PubMedID: 18065616 |
| Gene_locus related to this paper: suldn-q30ua6 , suldn-q30rs9 |
| Title : Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1 - Kane_2007_J.Bacteriol_189_1931 |
| Author(s) : Kane SR , Chakicherla AY , Chain PS , Schmidt R , Shin MW , Legler TC , Scow KM , Larimer FW , Lucas SM , Richardson PM , Hristova KR |
| Ref : Journal of Bacteriology , 189 :1931 , 2007 |
| Abstract : Kane_2007_J.Bacteriol_189_1931 |
| ESTHER : Kane_2007_J.Bacteriol_189_1931 |
| PubMedSearch : Kane_2007_J.Bacteriol_189_1931 |
| PubMedID: 17158667 |
| Gene_locus related to this paper: metpp-a2scm2 , metpp-a2set2 , metpp-a2sg50 , metpp-a2sg73 , metpp-a2si41 , metpp-a2siz8 , metpp-a2skw2 , metpp-a2slp5 , metpp-a2slq1 , metpp-a2slq8 , metpp-a2sly3 , metpp-metx , metpp-a2smg5 , metpp-a2skr2 , metpp-a2sg36 , metpp-a2sjv0 |
| Title : Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation - Stein_2007_Environ.Microbiol_9_2993 |
| Author(s) : Stein LY , Arp DJ , Berube PM , Chain PS , Hauser L , Jetten MS , Klotz MG , Larimer FW , Norton JM , Op den Camp HJ , Shin M , Wei X |
| Ref : Environ Microbiol , 9 :2993 , 2007 |
| Abstract : Stein_2007_Environ.Microbiol_9_2993 |
| ESTHER : Stein_2007_Environ.Microbiol_9_2993 |
| PubMedSearch : Stein_2007_Environ.Microbiol_9_2993 |
| PubMedID: 17991028 |
| Gene_locus related to this paper: nitec-metx , nitec-q0ae77 , nitec-q0ag98 , nitec-q0ahg3 , nitec-q0aix1 , nitec-q0ajy0 , nitec-q0aea2 , nitec-q0aea3 |
| Title : The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2 - Scott_2006_PLoS.Biol_4_e383 |
| Author(s) : Scott KM , Sievert SM , Abril FN , Ball LA , Barrett CJ , Blake RA , Boller AJ , Chain PS , Clark JA , Davis CR , Detter C , Do KF , Dobrinski KP , Faza BI , Fitzpatrick KA , Freyermuth SK , Harmer TL , Hauser LJ , Hugler M , Kerfeld CA , Klotz MG , Kong WW , Land M , Lapidus A , Larimer FW , Longo DL , Lucas S , Malfatti SA , Massey SE , Martin DD , McCuddin Z , Meyer F , Moore JL , Ocampo LH, Jr. , Paul JH , Paulsen IT , Reep DK , Ren Q , Ross RL , Sato PY , Thomas P , Tinkham LE , Zeruth GT |
| Ref : PLoS Biol , 4 :e383 , 2006 |
| Abstract : Scott_2006_PLoS.Biol_4_e383 |
| ESTHER : Scott_2006_PLoS.Biol_4_e383 |
| PubMedSearch : Scott_2006_PLoS.Biol_4_e383 |
| PubMedID: 17105352 |
| Gene_locus related to this paper: thicr-q31fm2 , thicr-q31ih5 |
| Title : The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans - Beller_2006_J.Bacteriol_188_1473 |
| Author(s) : Beller HR , Chain PS , Letain TE , Chakicherla A , Larimer FW , Richardson PM , Coleman MA , Wood AP , Kelly DP |
| Ref : Journal of Bacteriology , 188 :1473 , 2006 |
| Abstract : Beller_2006_J.Bacteriol_188_1473 |
| ESTHER : Beller_2006_J.Bacteriol_188_1473 |
| PubMedSearch : Beller_2006_J.Bacteriol_188_1473 |
| PubMedID: 16452431 |
| Gene_locus related to this paper: thida-q3sez3 , thida-q3sfi8 , thida-q3sfs9 , thida-q3sgm5 , thida-q3sh03 , thida-q3sij1 , thida-q3sja9 , thida-q3sk45 , thida-q3slh7 , thida-q3slx8 |
| Title : Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707 - Klotz_2006_Appl.Environ.Microbiol_72_6299 |
| Author(s) : Klotz MG , Arp DJ , Chain PS , El-Sheikh AF , Hauser LJ , Hommes NG , Larimer FW , Malfatti SA , Norton JM , Poret-Peterson AT , Vergez LM , Ward BB |
| Ref : Applied Environmental Microbiology , 72 :6299 , 2006 |
| Abstract : Klotz_2006_Appl.Environ.Microbiol_72_6299 |
| ESTHER : Klotz_2006_Appl.Environ.Microbiol_72_6299 |
| PubMedSearch : Klotz_2006_Appl.Environ.Microbiol_72_6299 |
| PubMedID: 16957257 |
| Gene_locus related to this paper: nitoc-q3jai4 , nitoc-q3jbe6 , nitoc-q3j9s2 |
| Title : Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255 - Starkenburg_2006_Appl.Environ.Microbiol_72_2050 |
| Author(s) : Starkenburg SR , Chain PS , Sayavedra-Soto LA , Hauser L , Land ML , Larimer FW , Malfatti SA , Klotz MG , Bottomley PJ , Arp DJ , Hickey WJ |
| Ref : Applied Environmental Microbiology , 72 :2050 , 2006 |
| Abstract : Starkenburg_2006_Appl.Environ.Microbiol_72_2050 |
| ESTHER : Starkenburg_2006_Appl.Environ.Microbiol_72_2050 |
| PubMedSearch : Starkenburg_2006_Appl.Environ.Microbiol_72_2050 |
| PubMedID: 16517654 |
| Gene_locus related to this paper: nitwn-metx , nitwn-q3sn49 , nitwn-q3snc4 , nitwn-q3sne0 , nitwn-q3spr7 , nitwn-q3sqi0 , nitwn-q3sqk9 , nitwn-q3ss14 , nitwn-q3ss30 , nitwn-q3svd2 , nitwn-q3swe3 |
| Title : Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen - Chain_2006_J.Bacteriol_188_4453 |
| Author(s) : Chain PS , Hu P , Malfatti SA , Radnedge L , Larimer F , Vergez LM , Worsham P , Chu MC , Andersen GL |
| Ref : Journal of Bacteriology , 188 :4453 , 2006 |
| Abstract : Chain_2006_J.Bacteriol_188_4453 |
| ESTHER : Chain_2006_J.Bacteriol_188_4453 |
| PubMedSearch : Chain_2006_J.Bacteriol_188_4453 |
| PubMedID: 16740952 |
| Gene_locus related to this paper: yerpe-BIOH , yerpe-dlhh , yerpe-PIP , yerpe-PLDB , yerpe-PTRB , yerpe-Y0507 , yerpe-y1616 , yerpe-y3224 , yerpe-YPLA , yerpe-YPO0180 , yerpe-YPO0667 , yerpe-YPO0773 , yerpe-YPO0986 , yerpe-YPO1501 , yerpe-YPO1997 , yerpe-YPO2526 , yerpe-YPO2814 |
| Title : Whole-genome analyses of speciation events in pathogenic Brucellae - Chain_2005_Infect.Immun_73_8353 |
| Author(s) : Chain PS , Comerci DJ , Tolmasky ME , Larimer FW , Malfatti SA , Vergez LM , Aguero F , Land ML , Ugalde RA , Garcia E |
| Ref : Infect Immun , 73 :8353 , 2005 |
| Abstract : Chain_2005_Infect.Immun_73_8353 |
| ESTHER : Chain_2005_Infect.Immun_73_8353 |
| PubMedSearch : Chain_2005_Infect.Immun_73_8353 |
| PubMedID: 16299333 |
| Gene_locus related to this paper: brume-BMEI0552 , brume-BMEI0733 , brume-BMEI1044 , brume-BMEI1119 , brume-BMEI1365 , brume-BMEI1594 , brume-BMEI1608 , brume-BMEI1822 , brume-BMEI1884 , brume-BMEI1951 , brume-BMEI2011 , brume-BMEII0047 , brume-BMEII0681 , brume-dhE2 , brume-PCAD , brusu-BR0288 , brusu-BR1327 |