Full name :
First name :
Mail :
Zip Code :
City :
Country :
Email :
Phone :
Fax :
Website :
Directory :
| Title : Multimeric structure of a subfamily III haloalkane dehalogenase-like enzyme solved by combination of cryo-EM and X-ray crystallography - Chmelova_2023_Protein.Sci__e4751 |
| Author(s) : Chmelova K , Gao T , Polak M , Schenkmayerova A , Croll TI , Shaikh TR , Skarupova J , Chaloupkova R , Diederichs K , Read RJ , Damborsky J , Novacek J , Marek M |
| Ref : Protein Science , :e4751 , 2023 |
| Abstract : Chmelova_2023_Protein.Sci__e4751 |
| ESTHER : Chmelova_2023_Protein.Sci__e4751 |
| PubMedSearch : Chmelova_2023_Protein.Sci__e4751 |
| PubMedID: 37574754 |
| Gene_locus related to this paper: halmt-DhmeAIII |
| Title : Stabilization of Haloalkane Dehalogenase Structure by Interfacial Interaction with Ionic Liquids - Shaposhnikova_2021_Crystals_11_1052 |
| Author(s) : Shaposhnikova A , Kuty M , Chaloupkova R , Damborsky J , Smatanova IK , Minofar B , Prudnikova T |
| Ref : Crystals , 11 :1052 , 2021 |
| Abstract : Shaposhnikova_2021_Crystals_11_1052 |
| ESTHER : Shaposhnikova_2021_Crystals_11_1052 |
| PubMedSearch : Shaposhnikova_2021_Crystals_11_1052 |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : The tetrameric structure of the novel haloalkane dehalogenase DpaA from Paraglaciecola agarilytica NO2 - Mazur_2021_Acta.Crystallogr.D.Struct.Biol_77_347 |
| Author(s) : Mazur A , Prudnikova T , Grinkevich P , Mesters JR , Mrazova D , Chaloupkova R , Damborsky J , Kuty M , Kolenko P , Kuta Smatanova I |
| Ref : Acta Crystallographica D Struct Biol , 77 :347 , 2021 |
| Abstract : Mazur_2021_Acta.Crystallogr.D.Struct.Biol_77_347 |
| ESTHER : Mazur_2021_Acta.Crystallogr.D.Struct.Biol_77_347 |
| PubMedSearch : Mazur_2021_Acta.Crystallogr.D.Struct.Biol_77_347 |
| PubMedID: 33645538 |
| Gene_locus related to this paper: 9alte-k6xnl5 |
| Title : Description of Transport Tunnel in Haloalkane Dehalogenase Variant LinB D147C+L177C from Sphingobium japonicum - Iermak_2021_Catalysts_11_5 |
| Author(s) : Iermak I , Degtjarik O , Havlickova P , Kuty M , Chaloupkova R , Damborsky J , Prudnikova T , Smatanova IK |
| Ref : Catalysts , 11 :5 , 2021 |
| Abstract : Iermak_2021_Catalysts_11_5 |
| ESTHER : Iermak_2021_Catalysts_11_5 |
| PubMedSearch : Iermak_2021_Catalysts_11_5 |
| PubMedID: |
| Gene_locus related to this paper: sphpi-linb |
| Title : Structural Analysis of the Ancestral Haloalkane Dehalogenase AncLinB-DmbA - Mazur_2021_Int.J.Mol.Sci_22_11992 |
| Author(s) : Mazur A , Grinkevich P , Chaloupkova R , Havlickova P , Kascakova B , Kuty M , Damborsky J , Kuta Smatanova I , Prudnikova T |
| Ref : Int J Mol Sci , 22 : , 2021 |
| Abstract : Mazur_2021_Int.J.Mol.Sci_22_11992 |
| ESTHER : Mazur_2021_Int.J.Mol.Sci_22_11992 |
| PubMedSearch : Mazur_2021_Int.J.Mol.Sci_22_11992 |
| PubMedID: 34769421 |
| Gene_locus related to this paper: 9zzzz-AncLinB |
| Title : Engineering the protein dynamics of an ancestral luciferase - Schenkmayerova_2021_Nat.Commun_12_3616 |
| Author(s) : Schenkmayerova A , Pinto GP , Toul M , Marek M , Hernychova L , Planas-Iglesias J , Daniel Liskova V , Pluskal D , Vasina M , Emond S , Dorr M , Chaloupkova R , Bednar D , Prokop Z , Hollfelder F , Bornscheuer UT , Damborsky J |
| Ref : Nat Commun , 12 :3616 , 2021 |
| Abstract : Schenkmayerova_2021_Nat.Commun_12_3616 |
| ESTHER : Schenkmayerova_2021_Nat.Commun_12_3616 |
| PubMedSearch : Schenkmayerova_2021_Nat.Commun_12_3616 |
| PubMedID: 34127663 |
| Gene_locus related to this paper: renre-luc |
| Title : Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers - Markova_2021_ACS.Catal_11_12864 |
| Author(s) : Markova K , Kunka A , Chmelova K , Havlasek M , Babkova P , Marques SM , Vasina M , Planas-Iglesias J , Chaloupkova R , Bednar D , Prokop Z , Damborsky J , Marek M |
| Ref : ACS Catal , 11 :12864 , 2021 |
| Abstract : Markova_2021_ACS.Catal_11_12864 |
| ESTHER : Markova_2021_ACS.Catal_11_12864 |
| PubMedSearch : Markova_2021_ACS.Catal_11_12864 |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Structural and catalytic effects of surface loop-helix transplantation within haloalkane dehalogenase family - Marek_2020_Comput.Struct.Biotechnol.J_18_1352 |
| Author(s) : Marek M , Chaloupkova R , Prudnikova T , Sato Y , Rezacova P , Nagata Y , Kuta Smatanova I , Damborsky J |
| Ref : Comput Struct Biotechnol J , 18 :1352 , 2020 |
| Abstract : Marek_2020_Comput.Struct.Biotechnol.J_18_1352 |
| ESTHER : Marek_2020_Comput.Struct.Biotechnol.J_18_1352 |
| PubMedSearch : Marek_2020_Comput.Struct.Biotechnol.J_18_1352 |
| PubMedID: 32612758 |
| Gene_locus related to this paper: brael-e2rv62 |
| Title : A Haloalkane Dehalogenase from Saccharomonospora viridis Strain DSM 43017, a Compost Bacterium with Unusual Catalytic Residues, Unique (S)-Enantiopreference, and High Thermostability - Chmelova_2020_Appl.Environ.Microbiol_86_ |
| Author(s) : Chmelova K , Sebestova E , Liskova V , Beier A , Bednar D , Prokop Z , Chaloupkova R , Damborsky J |
| Ref : Applied Environmental Microbiology , 86 : , 2020 |
| Abstract : Chmelova_2020_Appl.Environ.Microbiol_86_ |
| ESTHER : Chmelova_2020_Appl.Environ.Microbiol_86_ |
| PubMedSearch : Chmelova_2020_Appl.Environ.Microbiol_86_ |
| PubMedID: 32561584 |
| Gene_locus related to this paper: sacvd-DsvA |
| Title : Structures of hyperstable ancestral haloalkane dehalogenases show restricted conformational dynamics - Babkova_2020_Comput.Struct.Biotechnol.J_18_1497 |
| Author(s) : Babkova P , Dunajova Z , Chaloupkova R , Damborsky J , Bednar D , Marek M |
| Ref : Comput Struct Biotechnol J , 18 :1497 , 2020 |
| Abstract : Babkova_2020_Comput.Struct.Biotechnol.J_18_1497 |
| ESTHER : Babkova_2020_Comput.Struct.Biotechnol.J_18_1497 |
| PubMedSearch : Babkova_2020_Comput.Struct.Biotechnol.J_18_1497 |
| PubMedID: 32637047 |
| Gene_locus related to this paper: 9bact-AncHLD3 , 9bact-AncHLD2 , 9bact-AncHLD5 |
| Title : Engineering Protein Dynamics of Ancestral Luciferase - Schenkmayerova_2020_Chemrxiv__ |
| Author(s) : Schenkmayerova A , Pinto GP , Toul M , Marek M , Hernychova L , Planas-Iglesias J , Liskova V , Pluskal D , Vasina M , Emond S , Dorr M , Chaloupkova R , Bednar D , Prokop Z , Hollfelder F , Bornscheuer UT , Damborsky J |
| Ref : Chemrxiv , : , 2020 |
| Abstract : Schenkmayerova_2020_Chemrxiv__ |
| ESTHER : Schenkmayerova_2020_Chemrxiv__ |
| PubMedSearch : Schenkmayerova_2020_Chemrxiv__ |
| PubMedID: |
| Gene_locus related to this paper: renre-luc |
| Title : Crystal structure of the cold-adapted haloalkane dehalogenase DpcA from Psychrobacter cryohalolentis K5 - Tratsiak_2019_Acta.Crystallogr.F.Struct.Biol.Commun_75_324 |
| Author(s) : Tratsiak K , Prudnikova T , Drienovska I , Damborsky J , Brynda J , Pachl P , Kuty M , Chaloupkova R , Rezacova P , Kuta Smatanova I |
| Ref : Acta Crystallographica F Struct Biol Commun , 75 :324 , 2019 |
| Abstract : Tratsiak_2019_Acta.Crystallogr.F.Struct.Biol.Commun_75_324 |
| ESTHER : Tratsiak_2019_Acta.Crystallogr.F.Struct.Biol.Commun_75_324 |
| PubMedSearch : Tratsiak_2019_Acta.Crystallogr.F.Struct.Biol.Commun_75_324 |
| PubMedID: 31045561 |
| Gene_locus related to this paper: psyck-q1qbb9 |
| Title : Crystallization and Crystallographic Analysis of a Bradyrhizobium Elkanii USDA94 Haloalkane Dehalogenase Variant with an Eliminated Halide-Binding Site - Pudnikova_2019_Crystals_9_375 |
| Author(s) : Prudnikova T , Kascakova B , Mesters JR , Grinkevich P , Havlickova P , Mazur A , Shaposhnikova A , Chaloupkova R , Damborsky J , Kuty M , Smatanova IK |
| Ref : , 9 :375 , 2019 |
| Abstract : Pudnikova_2019_Crystals_9_375 |
| ESTHER : Pudnikova_2019_Crystals_9_375 |
| PubMedSearch : Pudnikova_2019_Crystals_9_375 |
| PubMedID: |
| Gene_locus related to this paper: brael-e2rv62 |
| Title : Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17 - Chrast_2019_Microorganisms_7_ |
| Author(s) : Chrast L , Tratsiak K , Planas-Iglesias J , Daniel L , Prudnikova T , Brezovsky J , Bednar D , Kuta Smatanova I , Chaloupkova R , Damborsky J |
| Ref : Microorganisms , 7 : , 2019 |
| Abstract : Chrast_2019_Microorganisms_7_ |
| ESTHER : Chrast_2019_Microorganisms_7_ |
| PubMedSearch : Chrast_2019_Microorganisms_7_ |
| PubMedID: 31661858 |
| Gene_locus related to this paper: 9alte-a3jb27 |
| Title : Impact of the access tunnel engineering on catalysis is strictly ligand-specific - Kaushik_2018_FEBS.J_285_1456 |
| Author(s) : Kaushik S , Marques SM , Khirsariya P , Paruch K , Libichova L , Brezovsky J , Prokop Z , Chaloupkova R , Damborsky J |
| Ref : Febs J , 285 :1456 , 2018 |
| Abstract : Kaushik_2018_FEBS.J_285_1456 |
| ESTHER : Kaushik_2018_FEBS.J_285_1456 |
| PubMedSearch : Kaushik_2018_FEBS.J_285_1456 |
| PubMedID: 29478278 |
| Title : Different Structural Origins of the Enantioselectivity of Haloalkane Dehalogenases toward Linear beta-Haloalkanes: Open-Solvated versus Occluded-Desolvated Active Sites - Liskova_2017_Angew.Chem.Int.Ed.Engl_56_4719 |
| Author(s) : Liskova V , Stepankova V , Bednar D , Brezovsky J , Prokop Z , Chaloupkova R , Damborsky J |
| Ref : Angew Chem Int Ed Engl , 56 :4719 , 2017 |
| Abstract : Liskova_2017_Angew.Chem.Int.Ed.Engl_56_4719 |
| ESTHER : Liskova_2017_Angew.Chem.Int.Ed.Engl_56_4719 |
| PubMedSearch : Liskova_2017_Angew.Chem.Int.Ed.Engl_56_4719 |
| PubMedID: 28334478 |
| Title : Catalytic Cycle of Haloalkane Dehalogenases Toward Unnatural Substrates Explored by Computational Modeling - Marques_2017_J.Chem.Inf.Model_57_1970 |
| Author(s) : Marques SM , Dunajova Z , Prokop Z , Chaloupkova R , Brezovsky J , Damborsky J |
| Ref : J Chem Inf Model , 57 :1970 , 2017 |
| Abstract : Marques_2017_J.Chem.Inf.Model_57_1970 |
| ESTHER : Marques_2017_J.Chem.Inf.Model_57_1970 |
| PubMedSearch : Marques_2017_J.Chem.Inf.Model_57_1970 |
| PubMedID: 28696117 |
| Title : Kinetics of binding of fluorescent ligands to enzymes with engineered access tunnels - Kaushik_2017_FEBS.J_284_134 |
| Author(s) : Kaushik S , Prokop Z , Damborsky J , Chaloupkova R |
| Ref : Febs J , 284 :134 , 2017 |
| Abstract : Kaushik_2017_FEBS.J_284_134 |
| ESTHER : Kaushik_2017_FEBS.J_284_134 |
| PubMedSearch : Kaushik_2017_FEBS.J_284_134 |
| PubMedID: 27863020 |
| Title : Ancestral Haloalkane Dehalogenases Show Robustness and Unique Substrate Specificity - Babkova_2017_Chembiochem_18_1448 |
| Author(s) : Babkova P , Sebestova E , Brezovsky J , Chaloupkova R , Damborsky J |
| Ref : Chembiochem , 18 :1448 , 2017 |
| Abstract : Babkova_2017_Chembiochem_18_1448 |
| ESTHER : Babkova_2017_Chembiochem_18_1448 |
| PubMedSearch : Babkova_2017_Chembiochem_18_1448 |
| PubMedID: 28419658 |
| Gene_locus related to this paper: 9bact-AncHLD5 |
| Title : Engineering a de novo transport tunnel - Brezovsky_2016_ACS.Catal_6_7597 |
| Author(s) : Brezovsky J , Babkova P , Degtjarik O , Fortova A , Gora A , Iermak I , Rezacova P , Dvorak P , Kuta-Smatanova I , Prokop Z , Chaloupkova R , Damborsky J |
| Ref : ACS Catal , 6 :7597 , 2016 |
| Abstract : Brezovsky_2016_ACS.Catal_6_7597 |
| ESTHER : Brezovsky_2016_ACS.Catal_6_7597 |
| PubMedSearch : Brezovsky_2016_ACS.Catal_6_7597 |
| PubMedID: |
| Gene_locus related to this paper: sphpi-linb |
| Title : Suppression of protein inactivation during freezing by minimizing pH changes using ionic cryoprotectants - Krauskova_2016_Int.J.Pharm_509_41 |
| Author(s) : Krauskova L , Prochazkova J , Klaskova M , Filipova L , Chaloupkova R , Maly S , Damborsky J , Heger D |
| Ref : Int J Pharm , 509 :41 , 2016 |
| Abstract : Krauskova_2016_Int.J.Pharm_509_41 |
| ESTHER : Krauskova_2016_Int.J.Pharm_509_41 |
| PubMedSearch : Krauskova_2016_Int.J.Pharm_509_41 |
| PubMedID: 27224008 |
| Title : FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants - Bednar_2015_PLoS.Comput.Biol_11_e1004556 |
| Author(s) : Bednar D , Beerens K , Sebestova E , Bendl J , Khare S , Chaloupkova R , Prokop Z , Brezovsky J , Baker D , Damborsky J |
| Ref : PLoS Comput Biol , 11 :e1004556 , 2015 |
| Abstract : Bednar_2015_PLoS.Comput.Biol_11_e1004556 |
| ESTHER : Bednar_2015_PLoS.Comput.Biol_11_e1004556 |
| PubMedSearch : Bednar_2015_PLoS.Comput.Biol_11_e1004556 |
| PubMedID: 26529612 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Balancing the stability-activity trade-off by fine-tuning dehalogenase access tunnels - Liskova_2015_ChemCatChem_7_648 |
| Author(s) : Liskova V , Bednar D , Prudnikova T , Rezacova P , Koudelakova T , Sebestova E , Kuta-Smatanova I , Brezovsky J , Chaloupkova R , Damborsky J |
| Ref : ChemCatChem , 7 :648 , 2015 |
| Abstract : Liskova_2015_ChemCatChem_7_648 |
| ESTHER : Liskova_2015_ChemCatChem_7_648 |
| PubMedSearch : Liskova_2015_ChemCatChem_7_648 |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Site-specific analysis of protein hydration based on unnatural amino acid fluorescence - Amaro_2015_J.Am.Chem.Soc_137_4988 |
| Author(s) : Amaro M , Brezovsky J , Kovacova S , Sykora J , Bednar D , Nemec V , Liskova V , Kurumbang NP , Beerens K , Chaloupkova R , Paruch K , Hof M , Damborsky J |
| Ref : Journal of the American Chemical Society , 137 :4988 , 2015 |
| Abstract : Amaro_2015_J.Am.Chem.Soc_137_4988 |
| ESTHER : Amaro_2015_J.Am.Chem.Soc_137_4988 |
| PubMedSearch : Amaro_2015_J.Am.Chem.Soc_137_4988 |
| PubMedID: 25815779 |
| Title : Structural and functional analysis of a novel haloalkane dehalogenase with two halide-binding sites - Chaloupkova_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_1884 |
| Author(s) : Chaloupkova R , Prudnikova T , Rezacova P , Prokop Z , Koudelakova T , Daniel L , Brezovsky J , Ikeda-Ohtsubo W4 , Sato Y , Kuty M , Nagata Y , Kuta Smatanova I , Damborsky J |
| Ref : Acta Crystallographica D Biol Crystallogr , 70 :1884 , 2014 |
| Abstract : Chaloupkova_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_1884 |
| ESTHER : Chaloupkova_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_1884 |
| PubMedSearch : Chaloupkova_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_1884 |
| PubMedID: 25004965 |
| Gene_locus related to this paper: brael-e2rv62 |
| Title : Crystallographic analysis of 1,2,3-trichloropropane biodegradation by the haloalkane dehalogenase DhaA31 - Lahoda_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_209 |
| Author(s) : Lahoda M , Mesters JR , Stsiapanava A , Chaloupkova R , Kuty M , Damborsky J , Kuta Smatanova I |
| Ref : Acta Crystallographica D Biol Crystallogr , 70 :209 , 2014 |
| Abstract : Lahoda_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_209 |
| ESTHER : Lahoda_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_209 |
| PubMedSearch : Lahoda_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_209 |
| PubMedID: 24531456 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Dynamics and hydration explain failed functional transformation in dehalogenase design - Sykora_2014_Nat.Chem.Biol_10_428 |
| Author(s) : Sykora J , Brezovsky J , Koudelakova T , Lahoda M , Fortova A , Chernovets T , Chaloupkova R , Stepankova V , Prokop Z , Smatanova IK , Hof M , Damborsky J |
| Ref : Nat Chemical Biology , 10 :428 , 2014 |
| Abstract : Sykora_2014_Nat.Chem.Biol_10_428 |
| ESTHER : Sykora_2014_Nat.Chem.Biol_10_428 |
| PubMedSearch : Sykora_2014_Nat.Chem.Biol_10_428 |
| PubMedID: 24727901 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Strategies for Stabilization of Enzymes in Organic Solvents - Stepankova_2013_ACS.Catal_3_2823 |
| Author(s) : Stepankova V , Bidmanova S , Koudelakova T , Prokop Z , Chaloupkova R , Damborsky J |
| Ref : ACS Catal , 3 :2823 , 2013 |
| Abstract : Stepankova_2013_ACS.Catal_3_2823 |
| ESTHER : Stepankova_2013_ACS.Catal_3_2823 |
| PubMedSearch : Stepankova_2013_ACS.Catal_3_2823 |
| PubMedID: |
| Title : Haloalkane dehalogenases: Biotechnological applications - Koudelakova_2013_Biotechnol.J_8_32 |
| Author(s) : Koudelakova T , Bidmanova S , Dvorak P , Pavelka A , Chaloupkova R , Prokop Z , Damborsky J |
| Ref : Biotechnol J , 8 :32 , 2013 |
| Abstract : Koudelakova_2013_Biotechnol.J_8_32 |
| ESTHER : Koudelakova_2013_Biotechnol.J_8_32 |
| PubMedSearch : Koudelakova_2013_Biotechnol.J_8_32 |
| PubMedID: 22965918 |
| Title : Engineering enzyme stability and resistance to an organic cosolvent by modification of residues in the access tunnel - Koudelakova_2013_Angew.Chem.Int.Ed.Engl_52_1959 |
| Author(s) : Koudelakova T , Chaloupkova R , Brezovsky J , Prokop Z , Sebestova E , Hesseler M , Khabiri M , Plevaka M , Kulik D , Kuta Smatanova I , Rezacova P , Ettrich R , Bornscheuer UT , Damborsky J |
| Ref : Angew Chem Int Ed Engl , 52 :1959 , 2013 |
| Abstract : Koudelakova_2013_Angew.Chem.Int.Ed.Engl_52_1959 |
| ESTHER : Koudelakova_2013_Angew.Chem.Int.Ed.Engl_52_1959 |
| PubMedSearch : Koudelakova_2013_Angew.Chem.Int.Ed.Engl_52_1959 |
| PubMedID: 23303607 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Expansion of access tunnels and active-site cavities influence activity of haloalkane dehalogenases in organic cosolvents - Stepankova_2013_Chembiochem_14_890 |
| Author(s) : Stepankova V , Khabiri M , Brezovsky J , Pavelka A , Sykora J , Amaro M , Minofar B , Prokop Z , Hof M , Ettrich R , Chaloupkova R , Damborsky J |
| Ref : Chembiochem , 14 :890 , 2013 |
| Abstract : Stepankova_2013_Chembiochem_14_890 |
| ESTHER : Stepankova_2013_Chembiochem_14_890 |
| PubMedSearch : Stepankova_2013_Chembiochem_14_890 |
| PubMedID: 23564727 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : The effect of a unique halide-stabilizing residue on the catalytic properties of haloalkane dehalogenase DatA from Agrobacterium tumefaciens C58 - Hasan_2013_FEBS.J_280_3149 |
| Author(s) : Hasan K , Gora A , Brezovsky J , Chaloupkova R , Moskalikova H , Fortova A , Nagata Y , Damborsky J , Prokop Z |
| Ref : Febs J , 280 :3149 , 2013 |
| Abstract : Hasan_2013_FEBS.J_280_3149 |
| ESTHER : Hasan_2013_FEBS.J_280_3149 |
| PubMedSearch : Hasan_2013_FEBS.J_280_3149 |
| PubMedID: 23490078 |
| Title : Differences in crystallization of two LinB variants from Sphingobium japonicum UT26 - Degtjarik_2013_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_69_284 |
| Author(s) : Degtjarik O , Chaloupkova R , Rezacova P , Kuty M , Damborsky J , Kuta Smatanova I |
| Ref : Acta Crystallographica Sect F Struct Biol Cryst Commun , 69 :284 , 2013 |
| Abstract : Degtjarik_2013_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_69_284 |
| ESTHER : Degtjarik_2013_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_69_284 |
| PubMedSearch : Degtjarik_2013_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_69_284 |
| PubMedID: 23519805 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Are time-dependent fluorescence shifts at the tunnel mouth of haloalkane dehalogenase enzymes dependent on the choice of the chromophore? - Amaro_2013_J.Phys.Chem.B_117_7898 |
| Author(s) : Amaro M , Brezovsky J , Kovacova S , Maier L , Chaloupkova R , Sykora J , Paruch K , Damborsky J , Hof M |
| Ref : J Phys Chem B , 117 :7898 , 2013 |
| Abstract : Amaro_2013_J.Phys.Chem.B_117_7898 |
| ESTHER : Amaro_2013_J.Phys.Chem.B_117_7898 |
| PubMedSearch : Amaro_2013_J.Phys.Chem.B_117_7898 |
| PubMedID: 23781851 |
| Title : Crystallographic analysis of new psychrophilic haloalkane dehalogenases: DpcA from Psychrobacter cryohalolentis K5 and DmxA from Marinobacter sp. ELB17 - Tratsiak_2013_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_69_683 |
| Author(s) : Tratsiak K , Degtjarik O , Drienovska I , Chrast L , Rezacova P , Kuty M , Chaloupkova R , Damborsky J , Kuta Smatanova I |
| Ref : Acta Crystallographica Sect F Struct Biol Cryst Commun , 69 :683 , 2013 |
| Abstract : Tratsiak_2013_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_69_683 |
| ESTHER : Tratsiak_2013_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_69_683 |
| PubMedSearch : Tratsiak_2013_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_69_683 |
| PubMedID: 23722854 |
| Gene_locus related to this paper: 9alte-a3jb27 , psyck-q1qbb9 |
| Title : Cation-specific effects on enzymatic catalysis driven by interactions at the tunnel mouth - Stepankova_2013_J.Phys.Chem.B_117_6394 |
| Author(s) : Stepankova V , Paterova J , Damborsky J , Jungwirth P , Chaloupkova R , Heyda J |
| Ref : J Phys Chem B , 117 :6394 , 2013 |
| Abstract : Stepankova_2013_J.Phys.Chem.B_117_6394 |
| ESTHER : Stepankova_2013_J.Phys.Chem.B_117_6394 |
| PubMedSearch : Stepankova_2013_J.Phys.Chem.B_117_6394 |
| PubMedID: 23627286 |
| Title : Release of halide ions from the buried active site of the haloalkane dehalogenase LinB revealed by stopped-flow fluorescence analysis and free energy calculations - Hladilkova_2013_J.Phys.Chem.B_117_14329 |
| Author(s) : Hladilkova J , Prokop Z , Chaloupkova R , Damborsky J , Jungwirth P |
| Ref : J Phys Chem B , 117 :14329 , 2013 |
| Abstract : Hladilkova_2013_J.Phys.Chem.B_117_14329 |
| ESTHER : Hladilkova_2013_J.Phys.Chem.B_117_14329 |
| PubMedSearch : Hladilkova_2013_J.Phys.Chem.B_117_14329 |
| PubMedID: 24151979 |
| Title : DspA from Strongylocentrotus purpuratus: The first biochemically characterized haloalkane dehalogenase of non-microbial origin - Fortova_2013_Biochimie_95_2091 |
| Author(s) : Fortova A , Sebestova E , Stepankova V , Koudelakova T , Palkova L , Damborsky J , Chaloupkova R |
| Ref : Biochimie , 95 :2091 , 2013 |
| Abstract : Fortova_2013_Biochimie_95_2091 |
| ESTHER : Fortova_2013_Biochimie_95_2091 |
| PubMedSearch : Fortova_2013_Biochimie_95_2091 |
| PubMedID: 23939220 |
| Gene_locus related to this paper: strpu-h3hrw2 |
| Title : Biochemical characterization of a novel haloalkane dehalogenase from a cold-adapted bacterium - Drienovska_2012_Appl.Environ.Microbiol_78_4995 |
| Author(s) : Drienovska I , Chovancova E , Koudelakova T , Damborsky J , Chaloupkova R |
| Ref : Applied Environmental Microbiology , 78 :4995 , 2012 |
| Abstract : Drienovska_2012_Appl.Environ.Microbiol_78_4995 |
| ESTHER : Drienovska_2012_Appl.Environ.Microbiol_78_4995 |
| PubMedSearch : Drienovska_2012_Appl.Environ.Microbiol_78_4995 |
| PubMedID: 22582053 |
| Gene_locus related to this paper: psyck-q1qbb9 |
| Title : Crystallization and crystallographic analysis of the Rhodococcus rhodochrous NCIMB 13064 DhaA mutant DhaA31 and its complex with 1,2,3-trichloropropane - Lahoda_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_397 |
| Author(s) : Lahoda M , Chaloupkova R , Stsiapanava A , Damborsky J , Kuta Smatanova I |
| Ref : Acta Crystallographica Sect F Struct Biol Cryst Commun , 67 :397 , 2011 |
| Abstract : Lahoda_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_397 |
| ESTHER : Lahoda_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_397 |
| PubMedSearch : Lahoda_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_397 |
| PubMedID: 21393851 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Crystallization and preliminary X-ray diffraction analysis of the wild-type haloalkane dehalogenase DhaA and its variant DhaA13 complexed with different ligands - Stsiapanava_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_253 |
| Author(s) : Stsiapanava A , Chaloupkova R , Fortova A , Brynda J , Weiss MS , Damborsky J , Smatanova IK |
| Ref : Acta Crystallographica Sect F Struct Biol Cryst Commun , 67 :253 , 2011 |
| Abstract : Stsiapanava_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_253 |
| ESTHER : Stsiapanava_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_253 |
| PubMedSearch : Stsiapanava_2011_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_67_253 |
| PubMedID: 21301099 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Stereoselectivity and conformational stability of haloalkane dehalogenase DbjA from Bradyrhizobium japonicum USDA110: the effect of pH and temperature - Chaloupkova_2011_FEBS.J_278_2728 |
| Author(s) : Chaloupkova R , Prokop Z , Sato Y , Nagata Y , Damborsky J |
| Ref : Febs J , 278 :2728 , 2011 |
| Abstract : Chaloupkova_2011_FEBS.J_278_2728 |
| ESTHER : Chaloupkova_2011_FEBS.J_278_2728 |
| PubMedSearch : Chaloupkova_2011_FEBS.J_278_2728 |
| PubMedID: 21635695 |
| Title : Biochemical characteristics of the novel haloalkane dehalogenase DatA, isolated from the plant pathogen Agrobacterium tumefaciens C58 - Hasan_2011_Appl.Environ.Microbiol_77_1881 |
| Author(s) : Hasan K , Fortova A , Koudelakova T , Chaloupkova R , Ishitsuka M , Nagata Y , Damborsky J , Prokop Z |
| Ref : Applied Environmental Microbiology , 77 :1881 , 2011 |
| Abstract : Hasan_2011_Appl.Environ.Microbiol_77_1881 |
| ESTHER : Hasan_2011_Appl.Environ.Microbiol_77_1881 |
| PubMedSearch : Hasan_2011_Appl.Environ.Microbiol_77_1881 |
| PubMedID: 21193677 |
| Title : Development of an enzymatic fiber-optic biosensor for detection of halogenated hydrocarbons - Bidmanova_2010_Anal.Bioanal.Chem_398_1891 |
| Author(s) : Bidmanova S , Chaloupkova R , Damborsky J , Prokop Z |
| Ref : Anal Bioanal Chem , 398 :1891 , 2010 |
| Abstract : Bidmanova_2010_Anal.Bioanal.Chem_398_1891 |
| ESTHER : Bidmanova_2010_Anal.Bioanal.Chem_398_1891 |
| PubMedSearch : Bidmanova_2010_Anal.Bioanal.Chem_398_1891 |
| PubMedID: 20721539 |
| Title : Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering - |
| Author(s) : Prokop Z , Sato Y , Brezovsky J , Mozga T , Chaloupkova R , Koudelakova T , Jerabek P , Stepankova V , Natsume R , van Leeuwen JG , Janssen DB , Florian J , Nagata Y , Senda T , Damborsky J |
| Ref : Angew Chem Int Ed Engl , 49 :6111 , 2010 |
| PubMedID: 20645368 |
| Gene_locus related to this paper: braja-dhaa |
| Title : Crystallization and preliminary X-ray analysis of a novel haloalkane dehalogenase DbeA from Bradyrhizobium elkani USDA94 - Prudnikova_2009_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_65_353 |
| Author(s) : Prudnikova T , Mozga T , Rezacova P , Chaloupkova R , Sato Y , Nagata Y , Brynda J , Kuty M , Damborsky J , Smatanova IK |
| Ref : Acta Crystallographica Sect F Struct Biol Cryst Commun , 65 :353 , 2009 |
| Abstract : Prudnikova_2009_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_65_353 |
| ESTHER : Prudnikova_2009_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_65_353 |
| PubMedSearch : Prudnikova_2009_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_65_353 |
| PubMedID: 19342778 |
| Gene_locus related to this paper: brael-e2rv62 |
| Title : Pathways and mechanisms for product release in the engineered haloalkane dehalogenases explored using classical and random acceleration molecular dynamics simulations - Klvana_2009_J.Mol.Biol_392_1339 |
| Author(s) : Klvana M , Pavlova M , Koudelakova T , Chaloupkova R , Dvorak P , Prokop Z , Stsiapanava A , Kuty M , Kuta-Smatanova I , Dohnalek J , Kulhanek P , Wade RC , Damborsky J |
| Ref : Journal of Molecular Biology , 392 :1339 , 2009 |
| Abstract : Klvana_2009_J.Mol.Biol_392_1339 |
| ESTHER : Klvana_2009_J.Mol.Biol_392_1339 |
| PubMedSearch : Klvana_2009_J.Mol.Biol_392_1339 |
| PubMedID: 19577578 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate - Pavlova_2009_Nat.Chem.Biol_5_727 |
| Author(s) : Pavlova M , Klvana M , Prokop Z , Chaloupkova R , Banas P , Otyepka M , Wade RC , Tsuda M , Nagata Y , Damborsky J |
| Ref : Nat Chemical Biology , 5 :727 , 2009 |
| Abstract : Pavlova_2009_Nat.Chem.Biol_5_727 |
| ESTHER : Pavlova_2009_Nat.Chem.Biol_5_727 |
| PubMedSearch : Pavlova_2009_Nat.Chem.Biol_5_727 |
| PubMedID: 19701186 |
| Title : Biochemical characterization of haloalkane dehalogenases DrbA and DmbC, Representatives of a Novel Subfamily - Jesenska_2009_Appl.Environ.Microbiol_75_5157 |
| Author(s) : Jesenska A , Monincova M , Koudelakova T , Hasan K , Chaloupkova R , Prokop Z , Geerlof A , Damborsky J |
| Ref : Applied Environmental Microbiology , 75 :5157 , 2009 |
| Abstract : Jesenska_2009_Appl.Environ.Microbiol_75_5157 |
| ESTHER : Jesenska_2009_Appl.Environ.Microbiol_75_5157 |
| PubMedSearch : Jesenska_2009_Appl.Environ.Microbiol_75_5157 |
| PubMedID: 19502442 |
| Gene_locus related to this paper: myctu-Rv1833c |
| Title : Expression of glycosylated haloalkane dehalogenase LinB in Pichia pastoris - Nakamura_2006_Protein.Expr.Purif_46_85 |
| Author(s) : Nakamura T , Zamocky M , Zdrahal Z , Chaloupkova R , Monincova M , Prokop Z , Nagata Y , Damborsky J |
| Ref : Protein Expr Purif , 46 :85 , 2006 |
| Abstract : Nakamura_2006_Protein.Expr.Purif_46_85 |
| ESTHER : Nakamura_2006_Protein.Expr.Purif_46_85 |
| PubMedSearch : Nakamura_2006_Protein.Expr.Purif_46_85 |
| PubMedID: 16216524 |
| Title : Cloning, biochemical properties, and distribution of mycobacterial haloalkane dehalogenases - Jesenska_2005_Appl.Environ.Microbiol_71_6736 |
| Author(s) : Jesenska A , Pavlova M , Strouhal M , Chaloupkova R , Tesinska I , Monincova M , Prokop Z , Bartos M , Pavlik I , Rychlik I , Mobius P , Nagata Y , Damborsky J |
| Ref : Applied Environmental Microbiology , 71 :6736 , 2005 |
| Abstract : Jesenska_2005_Appl.Environ.Microbiol_71_6736 |
| ESTHER : Jesenska_2005_Appl.Environ.Microbiol_71_6736 |
| PubMedSearch : Jesenska_2005_Appl.Environ.Microbiol_71_6736 |
| PubMedID: 16269704 |
| Gene_locus related to this paper: myctu-linb |
| Title : Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities - Sato_2005_Appl.Environ.Microbiol_71_4372 |
| Author(s) : Sato Y , Monincova M , Chaloupkova R , Prokop Z , Ohtsubo Y , Minamisawa K , Tsuda M , Damborsky J , Nagata Y |
| Ref : Applied Environmental Microbiology , 71 :4372 , 2005 |
| Abstract : Sato_2005_Appl.Environ.Microbiol_71_4372 |
| ESTHER : Sato_2005_Appl.Environ.Microbiol_71_4372 |
| PubMedSearch : Sato_2005_Appl.Environ.Microbiol_71_4372 |
| PubMedID: 16085827 |
| Title : Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel - Chaloupkova_2003_J.Biol.Chem_278_52622 |
| Author(s) : Chaloupkova R , Sykorova J , Prokop Z , Jesenska A , Monincova M , Pavlova M , Tsuda M , Nagata Y , Damborsky J |
| Ref : Journal of Biological Chemistry , 278 :52622 , 2003 |
| Abstract : Chaloupkova_2003_J.Biol.Chem_278_52622 |
| ESTHER : Chaloupkova_2003_J.Biol.Chem_278_52622 |
| PubMedSearch : Chaloupkova_2003_J.Biol.Chem_278_52622 |
| PubMedID: 14525993 |
| Title : Catalytic mechanism of the maloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 - Prokop_2003_J.Biol.Chem_278_45094 |
| Author(s) : Prokop Z , Monincova M , Chaloupkova R , Klvana M , Nagata Y , Janssen DB , Damborsky J |
| Ref : Journal of Biological Chemistry , 278 :45094 , 2003 |
| Abstract : Prokop_2003_J.Biol.Chem_278_45094 |
| ESTHER : Prokop_2003_J.Biol.Chem_278_45094 |
| PubMedSearch : Prokop_2003_J.Biol.Chem_278_45094 |
| PubMedID: 12952988 |
| Gene_locus related to this paper: sphpi-linb |