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Author Report for: Ferrer M

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    Title: The Mobility of the Cap Domain Is Essential for the Substrate Promiscuity of a Family IV Esterase from Sorghum Rhizosphere Microbiome
    Distaso M, Cea-Rama I, Coscolin C, Chernikova TN, Tran H, Ferrer M, Sanz-Aparicio J, Golyshin PN
    Ref: Applied Environmental Microbiology, :e0180722, 2023 : PubMed


    Title: Assigning Functions of Unknown Enzymes by High-Throughput Enzyme Characterization
    Molina-Espeja P, Fernandez-Lopez L, Golyshin PN, Ferrer M
    Ref: Methods Mol Biol, 2555:181, 2023 : PubMed


    Title: Crystal structure of a family VIII beta-lactamase fold hydrolase reveals the molecular mechanism for its broad substrate scope
    Cea-Rama I, Coscolin C, Gonzalez-Alfonso JL, Raj J, Vasiljevic M, Plou FJ, Ferrer M, Sanz-Aparicio J
    Ref: Febs J, :, 2022 : PubMed


    Title: Metagenomic Mining for Esterases in the Microbial Community of Los Rueldos Acid Mine Drainage Formation
    Vidal P, Martinez-Martinez M, Fernandez-Lopez L, Roda S, Mendez-Garcia C, Golyshina OV, Guallar V, Pelaez AI, Ferrer M
    Ref: Front Microbiol, 13:868839, 2022 : PubMed


    Title: EP-Pred: A Machine Learning Tool for Bioprospecting Promiscuous Ester Hydrolases
    Xiang R, Fernandez-Lopez L, Robles-Martin A, Ferrer M, Guallar V
    Ref: Biomolecules, 12:, 2022 : PubMed


    Title: Structure and evolutionary trace-assisted screening of a residue swapping the substrate ambiguity and chiral specificity in an esterase
    Cea-Rama I, Coscolin C, Katsonis P, Bargiela R, Golyshin PN, Lichtarge O, Ferrer M, Sanz-Aparicio J
    Ref: Comput Struct Biotechnol J, 19:2307, 2021 : PubMed


    Title: Crystal structures of a novel family IV esterase in free and substrate-bound form
    Hoppner A, Bollinger A, Kobus S, Thies S, Coscolin C, Ferrer M, Jaeger KE, Smits SHJ
    Ref: Febs J, 288:3570, 2021 : PubMed


    Title: Promiscuous Esterases Counterintuitively Are Less Flexible than Specific Ones
    Nutschel C, Coscolin C, David B, Mulnaes D, Ferrer M, Jaeger KE, Gohlke H
    Ref: J Chem Inf Model, :, 2021 : PubMed


    Title: Computationally Driven Rational Design of Substrate Promiscuity on Serine Ester Hydrolases
    Roda S, Fernandez-Lopez L, Canadas R, Santiago G, Ferrer M, Guallar V
    Ref: ACS Catal, 11:3590, 2021 : PubMed


    Title: Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis
    Alonso S, Santiago G, Cea-Rama I, Fernandez-Lopez L, Coscolin C, Modregger J, Ressmann A, Martinez-Martinez M, Marrero H and Ferrer M <11 more author(s)>
    Ref: Nature Catalysis, 3:319, 2019 : PubMed


    Title: A Novel Polyester Hydrolase From the Marine Bacterium Pseudomonas aestusnigri - Structural and Functional Insights
    Bollinger A, Thies S, Knieps-Grunhagen E, Gertzen C, Kobus S, Hoppner A, Ferrer M, Gohlke H, Smits SHJ, Jaeger KE
    Ref: Front Microbiol, 11:114, 2020 : PubMed


    Title: Organic-Solvent-Tolerant Carboxylic Ester Hydrolases for Organic Synthesis
    Bollinger A, Molitor R, Thies S, Koch R, Coscolin C, Ferrer M, Jaeger KE
    Ref: Applied Environmental Microbiology, 86:e00106, 2020 : PubMed


    Title: Tuning the Properties of Natural Promiscuous Enzymes by Engineering Their Nano-environment
    Giunta CI, Cea-Rama I, Alonso S, Briand ML, Bargiela R, Coscolin C, Corvini PF, Ferrer M, Sanz-Aparicio J, Shahgaldian P
    Ref: ACS Nano, :, 2020 : PubMed


    Title: The Thaumarchaeon N. gargensis carries functional bioABD genes and has a promiscuous E. coli DeltabioH-complementing esterase EstN1
    Chow J, Danso D, Ferrer M, Streit WR
    Ref: Sci Rep, 8:13823, 2018 : PubMed


    Title: Determinants and prediction of esterase substrate promiscuity patterns
    Martinez-Martinez M, Coscolin C, Santiago G, Chow J, Stogios PJ, Bargiela R, Gertler C, Navarro-Fernandez J, Bollinger A and Ferrer M <32 more author(s)>
    Ref: ACS Chemical Biology, 13:225, 2018 : PubMed


    Title: Functional-Based Screening Methods for Detecting Esterase and Lipase Activity Against Multiple Substrates
    Reyes-Duarte D, Coscolin C, Martinez-Martinez M, Ferrer M, Garcia-Arellano H
    Ref: Methods Mol Biol, 1835:109, 2018 : PubMed


    Title: Rational Engineering of Multiple Active Sites in an Ester Hydrolase
    Santiago G, Martinez-Martinez M, Alonso S, Bargiela R, Coscolin C, Golyshin PN, Guallar V, Ferrer M
    Ref: Biochemistry, 57:2245, 2018 : PubMed


    Title: Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families
    Popovic A, Hai T, Tchigvintsev A, Hajighasemi M, Nocek B, Khusnutdinova AN, Brown G, Glinos J, Flick R and Yakunin AF <11 more author(s)>
    Ref: Sci Rep, 7:44103, 2017 : PubMed


    Title: High Throughput Screening of Esterases, Lipases and Phospholipases in Mutant and Metagenomic Libraries: A Review
    Pena-Garcia C, Martinez-Martinez M, Reyes-Duarte D, Ferrer M
    Ref: Comb Chem High Throughput Screen, 19:605, 2016 : PubMed


    Title: Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats
    Alcaide M, Stogios PJ, Lafraya A, Tchigvintsev A, Flick R, Bargiela R, Chernikova TN, Reva ON, Hai T and Ferrer M <11 more author(s)>
    Ref: Environ Microbiol, 17:332, 2015 : PubMed


    Title: Diversity of hydrolases from hydrothermal vent sediments of the Levante Bay, Vulcano Island (Aeolian archipelago) identified by activity-based metagenomics and biochemical characterization of new esterases and an arabinopyranosidase
    Placido A, Hai T, Ferrer M, Chernikova TN, Distaso M, Armstrong D, Yakunin AF, Toshchakov SV, Yakimov MM and Golyshin PN <4 more author(s)>
    Ref: Applied Microbiology & Biotechnology, 99:10031, 2015 : PubMed


    Title: Biochemical studies on a versatile esterase that is most catalytically active with polyaromatic esters
    Martinez-Martinez M, Lores I, Pena-Garcia C, Bargiela R, Reyes-Duarte D, Guazzaroni ME, Pelaez AI, Sanchez J, Ferrer M
    Ref: Microb Biotechnol, :, 2014 : PubMed


    Title: Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage
    Mendez-Garcia C, Mesa V, Sprenger RR, Richter M, Diez MS, Solano J, Bargiela R, Golyshina OV, Manteca A and Ferrer M <7 more author(s)>
    Ref: Isme J, 8:1259, 2014 : PubMed


    Title: Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the alpha/beta hydrolase family
    Alcaide M, Tornes J, Stogios PJ, Xu X, Gertler C, Di Leo R, Bargiela R, Lafraya A, Guazzaroni ME and Ferrer M <9 more author(s)>
    Ref: Biochemical Journal, 454:157, 2013 : PubMed


    Title: Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure
    Ferrer M, Ruiz A, Lanza F, Haange SB, Oberbach A, Till H, Bargiela R, Campoy C, Segura MT and Suarez A <3 more author(s)>
    Ref: Environ Microbiol, 15:211, 2013 : PubMed


    Title: Genome Sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T)
    Golyshin PN, Werner J, Chernikova TN, Tran H, Ferrer M, Yakimov MM, Teeling H, Golyshina OV
    Ref: Genome Announc, 1:e0014113, 2013 : PubMed


    Title: Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica
    Kube M, Chernikova TN, Al-Ramahi Y, Beloqui A, Lopez-Cortez N, Guazzaroni ME, Heipieper HJ, Klages S, Kotsyurbenko OR and Golyshin PN <26 more author(s)>
    Ref: Nat Commun, 4:2156, 2013 : PubMed


    Title: Biochemical diversity of carboxyl esterases and lipases from lake arreo (Spain): a metagenomic approach
    Martinez-Martinez M, Alcaide M, Tchigvintsev A, Reva O, Polaina J, Bargiela R, Guazzaroni ME, Chicote A, Canet A and Ferrer M <4 more author(s)>
    Ref: Applied Environmental Microbiology, 79:3553, 2013 : PubMed


    Title: Gene sets for utilization of primary and secondary nutrition supplies in the distal gut of endangered Iberian lynx
    Alcaide M, Messina E, Richter M, Bargiela R, Peplies J, Huws SA, Newbold CJ, Golyshin PN, Simon MA and Ferrer M <2 more author(s)>
    Ref: PLoS ONE, 7:e51521, 2012 : PubMed


    Title: Microbial beta-glucosidases from cow rumen metagenome enhance the saccharification of lignocellulose in combination with commercial cellulase cocktail
    Del Pozo MV, Fernandez-Arrojo L, Gil-Martinez J, Montesinos A, Chernikova TN, Nechitaylo TY, Waliszek A, Tortajada M, Rojas A and Golyshin PN <5 more author(s)>
    Ref: Biotechnol Biofuels, 5:73, 2012 : PubMed


    Title: Functional-based screening methods for lipases, esterases, and phospholipases in metagenomic libraries
    Reyes-Duarte D, Ferrer M, Garcia-Arellano H
    Ref: Methods Mol Biol, 861:101, 2012 : PubMed


    Title: Taxonomic and functional metagenomic profiling of the microbial community in the anoxic sediment of a sub-saline shallow lake (Laguna de Carrizo, Central Spain)
    Ferrer M, Guazzaroni ME, Richter M, Garcia-Salamanca A, Yarza P, Suarez-Suarez A, Solano J, Alcaide M, van Dillewijn P and Ramos JL <13 more author(s)>
    Ref: Microb Ecol, 62:824, 2011 : PubMed


    Title: Novel hybrid esterase-haloacid dehalogenase enzyme
    Beloqui A, Polaina J, Vieites JM, Reyes-Duarte D, Torres R, Golyshina OV, Chernikova TN, Waliczek A, Aharoni A and Ferrer M <3 more author(s)>
    Ref: Chembiochem, 11:1975, 2010 : PubMed


    Title: Diversity of glycosyl hydrolases from cellulose-depleting communities enriched from casts of two earthworm species
    Beloqui A, Nechitaylo TY, Lopez-Cortes N, Ghazi A, Guazzaroni ME, Polaina J, Strittmatter AW, Reva O, Waliczek A and Golyshin PN <3 more author(s)>
    Ref: Applied Environmental Microbiology, 76:5934, 2010 : PubMed


    Title: Inter-conversion of catalytic abilities in a bifunctional carboxyl/feruloyl-esterase from earthworm gut metagenome
    Vieites JM, Ghazi A, Beloqui A, Polaina J, Andreu JM, Golyshina OV, Nechitaylo TY, Waliczek A, Yakimov MM and Ferrer M <1 more author(s)>
    Ref: Microb Biotechnol, 3:48, 2010 : PubMed


    Title: The 'pH optimum anomaly' of intracellular enzymes of Ferroplasma acidiphilum
    Golyshina OV, Golyshin PN, Timmis KN, Ferrer M
    Ref: Environ Microbiol, 8:416, 2006 : PubMed


    Title: Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
    Schneiker S, Martins dos Santos VA, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M and Golyshin PN <20 more author(s)>
    Ref: Nat Biotechnol, 24:997, 2006 : PubMed


    Title: Microbial enzymes mined from the Urania deep-sea hypersaline anoxic basin
    Ferrer M, Golyshina OV, Chernikova TN, Khachane AN, Martins dos Santos VA, Yakimov MM, Timmis KN, Golyshin PN
    Ref: Chemical Biology, 12:895, 2005 : PubMed


    Title: Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora
    Ferrer M, Golyshina OV, Chernikova TN, Khachane AN, Reyes-Duarte D, Santos VA, Strompl C, Elborough K, Jarvis G and Golyshin PN <3 more author(s)>
    Ref: Environ Microbiol, 7:1996, 2005 : PubMed


    Title: Conversion of a carboxylesterase into a triacylglycerol lipase by a random mutation
    Reyes-Duarte D, Polaina J, Lopez-Cortes N, Alcalde M, Plou FJ, Elborough K, Ballesteros A, Timmis KN, Golyshin PN, Ferrer M
    Ref: Angew Chem Int Ed Engl, 44:7553, 2005 : PubMed


    Title: Expression of a temperature-sensitive esterase in a novel chaperone-based Escherichia coli strain
    Ferrer M, Chernikova TN, Timmis KN, Golyshin PN
    Ref: Applied Environmental Microbiology, 70:4499, 2004 : PubMed


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