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| Title : Transient binding sites at the surface of haloalkane dehalogenase LinB as locations for fine-tuning enzymatic activity - Raczynska_2023_PLoS.One_18_e0280776 |
| Author(s) : Raczynska A , Kapica P , Papaj K , Stanczak A , Shyntum D , Spychalska P , Byczek-Wyrostek A , Gora A |
| Ref : PLoS ONE , 18 :e0280776 , 2023 |
| Abstract : Raczynska_2023_PLoS.One_18_e0280776 |
| ESTHER : Raczynska_2023_PLoS.One_18_e0280776 |
| PubMedSearch : Raczynska_2023_PLoS.One_18_e0280776 |
| PubMedID: 36827335 |
| Gene_locus related to this paper: myctu-linb |
| Title : Geometry-Based versus Small-Molecule Tracking Method for Tunnel Identification: Benefits and Pitfalls - Mitusinska_2022_J.Chem.Inf.Model_62_6803 |
| Author(s) : Mitusinska K , Bzowka M , Magdziarz T , Gora A |
| Ref : J Chem Inf Model , 62 :6803 , 2022 |
| Abstract : Mitusinska_2022_J.Chem.Inf.Model_62_6803 |
| ESTHER : Mitusinska_2022_J.Chem.Inf.Model_62_6803 |
| PubMedSearch : Mitusinska_2022_J.Chem.Inf.Model_62_6803 |
| PubMedID: 36374085 |
| Title : Evolution of tunnels in alpha\/beta-hydrolase fold proteins-What can we learn from studying epoxide hydrolases? - Bzowka_2022_PLoS.Comput.Biol_18_e1010119 |
| Author(s) : Bzowka M , Mitusinska K , Raczynska A , Skalski T , Samol A , Bagrowska W , Magdziarz T , Gora A |
| Ref : PLoS Comput Biol , 18 :e1010119 , 2022 |
| Abstract : Bzowka_2022_PLoS.Comput.Biol_18_e1010119 |
| ESTHER : Bzowka_2022_PLoS.Comput.Biol_18_e1010119 |
| PubMedSearch : Bzowka_2022_PLoS.Comput.Biol_18_e1010119 |
| PubMedID: 35580137 |
| Title : Structure-function relationship between soluble epoxide hydrolases structure and their tunnel network - Mitusinska_2022_Comput.Struct.Biotechnol.J_20_193 |
| Author(s) : Mitusinska K , Wojsa P , Bzowka M , Raczynska A , Bagrowska W , Samol A , Kapica P , Gora A |
| Ref : Comput Struct Biotechnol J , 20 :193 , 2022 |
| Abstract : Mitusinska_2022_Comput.Struct.Biotechnol.J_20_193 |
| ESTHER : Mitusinska_2022_Comput.Struct.Biotechnol.J_20_193 |
| PubMedSearch : Mitusinska_2022_Comput.Struct.Biotechnol.J_20_193 |
| PubMedID: 35024092 |
| Title : Computational insights into the known inhibitors of human soluble epoxide hydrolase - Bzowka_2021_Drug.Discov.Today__ |
| Author(s) : Bzowka M , Mitusinska K , Hopko K , Gora A |
| Ref : Drug Discov Today , : , 2021 |
| Abstract : Bzowka_2021_Drug.Discov.Today__ |
| ESTHER : Bzowka_2021_Drug.Discov.Today__ |
| PubMedSearch : Bzowka_2021_Drug.Discov.Today__ |
| PubMedID: 34082135 |
| Gene_locus related to this paper: human-EPHX2 |
| Title : AQUA-DUCT 1.0: structural and functional analysis of macromolecules from an intramolecular voids perspective - Magdziarz_2020_Bioinformatics_36_2599 |
| Author(s) : Magdziarz T , Mitusinska K , Bzowka M , Raczynska A , Stanczak A , Banas M , Bagrowska W , Gora A |
| Ref : Bioinformatics , 36 :2599 , 2020 |
| Abstract : Magdziarz_2020_Bioinformatics_36_2599 |
| ESTHER : Magdziarz_2020_Bioinformatics_36_2599 |
| PubMedSearch : Magdziarz_2020_Bioinformatics_36_2599 |
| PubMedID: 31860077 |
| Title : Simple Selection Procedure to Distinguish between Static and Flexible Loops - Mitusiska_2020_Int.J.Mol.Sci_21_ |
| Author(s) : Mitusiska K , Skalski T , Gora A |
| Ref : Int J Mol Sci , 21 : , 2020 |
| Abstract : Mitusiska_2020_Int.J.Mol.Sci_21_ |
| ESTHER : Mitusiska_2020_Int.J.Mol.Sci_21_ |
| PubMedSearch : Mitusiska_2020_Int.J.Mol.Sci_21_ |
| PubMedID: 32225102 |
| Title : Exploring Solanum tuberosum Epoxide Hydrolase Internal Architecture by Water Molecules Tracking - Mitusinska_2018_Biomolecules_8_ |
| Author(s) : Mitusinska K , Magdziarz T , Bzowka M , Stanczak A , Gora A |
| Ref : Biomolecules , 8 : , 2018 |
| Abstract : Mitusinska_2018_Biomolecules_8_ |
| ESTHER : Mitusinska_2018_Biomolecules_8_ |
| PubMedSearch : Mitusinska_2018_Biomolecules_8_ |
| PubMedID: 30424576 |
| Gene_locus related to this paper: soltu-3epoxy |
| Title : AQUA-DUCT: a ligands tracking tool - Magdziarz_2017_Bioinformatics_33_2045 |
| Author(s) : Magdziarz T , Mitusinska K , Goldowska S , Pluciennik A , Stolarczyk M , Lugowska M , Gora A |
| Ref : Bioinformatics , 33 :2045 , 2017 |
| Abstract : Magdziarz_2017_Bioinformatics_33_2045 |
| ESTHER : Magdziarz_2017_Bioinformatics_33_2045 |
| PubMedSearch : Magdziarz_2017_Bioinformatics_33_2045 |
| PubMedID: 28334160 |
| Title : Engineering a de novo transport tunnel - Brezovsky_2016_ACS.Catal_6_7597 |
| Author(s) : Brezovsky J , Babkova P , Degtjarik O , Fortova A , Gora A , Iermak I , Rezacova P , Dvorak P , Kuta-Smatanova I , Prokop Z , Chaloupkova R , Damborsky J |
| Ref : ACS Catal , 6 :7597 , 2016 |
| Abstract : Brezovsky_2016_ACS.Catal_6_7597 |
| ESTHER : Brezovsky_2016_ACS.Catal_6_7597 |
| PubMedSearch : Brezovsky_2016_ACS.Catal_6_7597 |
| PubMedID: |
| Gene_locus related to this paper: sphpi-linb |
| Title : The effect of a unique halide-stabilizing residue on the catalytic properties of haloalkane dehalogenase DatA from Agrobacterium tumefaciens C58 - Hasan_2013_FEBS.J_280_3149 |
| Author(s) : Hasan K , Gora A , Brezovsky J , Chaloupkova R , Moskalikova H , Fortova A , Nagata Y , Damborsky J , Prokop Z |
| Ref : Febs J , 280 :3149 , 2013 |
| Abstract : Hasan_2013_FEBS.J_280_3149 |
| ESTHER : Hasan_2013_FEBS.J_280_3149 |
| PubMedSearch : Hasan_2013_FEBS.J_280_3149 |
| PubMedID: 23490078 |
| Title : A single mutation in a tunnel to the active site changes the mechanism and kinetics of product release in haloalkane dehalogenase LinB - Biedermannova_2012_J.Biol.Chem_287_29062 |
| Author(s) : Biedermannova L , Prokop Z , Gora A , Chovancova E , Kovacs M , Damborsky J , Wade RC |
| Ref : Journal of Biological Chemistry , 287 :29062 , 2012 |
| Abstract : Biedermannova_2012_J.Biol.Chem_287_29062 |
| ESTHER : Biedermannova_2012_J.Biol.Chem_287_29062 |
| PubMedSearch : Biedermannova_2012_J.Biol.Chem_287_29062 |
| PubMedID: 22745119 |