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References (8)

Title : The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia - Munoz_2015_PLoS.Genet_11_e1005493
Author(s) : Munoz JF , Gauthier GM , Desjardins CA , Gallo JE , Holder J , Sullivan TD , Marty AJ , Carmen JC , Chen Z , Ding L , Gujja S , Magrini V , Misas E , Mitreva M , Priest M , Saif S , Whiston EA , Young S , Zeng Q , Goldman WE , Mardis ER , Taylor JW , McEwen JG , Clay OK , Klein BS , Cuomo CA
Ref : PLoS Genet , 11 :e1005493 , 2015
Abstract : Munoz_2015_PLoS.Genet_11_e1005493
ESTHER : Munoz_2015_PLoS.Genet_11_e1005493
PubMedSearch : Munoz_2015_PLoS.Genet_11_e1005493
PubMedID: 26439490
Gene_locus related to this paper: ajedr-c5gqv9 , 9euro-a0a2b7ztc4 , 9euro-a0a2b7wr51 , blags-a0a179v0z0 , 9euro-a0a0h1bel0 , blags-a0a179udh1 , ajedr-kex1 , ajedr-cbpya

Title : The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes - Swart_2013_PLoS.Biol_11_e1001473
Author(s) : Swart EC , Bracht JR , Magrini V , Minx P , Chen X , Zhou Y , Khurana JS , Goldman AD , Nowacki M , Schotanus K , Jung S , Fulton RS , Ly A , McGrath S , Haub K , Wiggins JL , Storton D , Matese JC , Parsons L , Chang WJ , Bowen MS , Stover NA , Jones TA , Eddy SR , Herrick GA , Doak TG , Wilson RK , Mardis ER , Landweber LF
Ref : PLoS Biol , 11 :e1001473 , 2013
Abstract : Swart_2013_PLoS.Biol_11_e1001473
ESTHER : Swart_2013_PLoS.Biol_11_e1001473
PubMedSearch : Swart_2013_PLoS.Biol_11_e1001473
PubMedID: 23382650
Gene_locus related to this paper: 9spit-j9j7j1 , 9spit-j9hp22 , 9spit-j9ivu0

Title : Silencing of germline-expressed genes by DNA elimination in somatic cells - Wang_2012_Dev.Cell_23_1072
Author(s) : Wang J , Mitreva M , Berriman M , Thorne A , Magrini V , Koutsovoulos G , Kumar S , Blaxter ML , Davis RE
Ref : Dev Cell , 23 :1072 , 2012
Abstract : Wang_2012_Dev.Cell_23_1072
ESTHER : Wang_2012_Dev.Cell_23_1072
PubMedSearch : Wang_2012_Dev.Cell_23_1072
PubMedID: 23123092
Gene_locus related to this paper: ascsu-f1kr69 , ascsu-f1kxs8 , ascsu-f1ky57 , ascsu-f1kze8 , ascsu-f1kzv8 , ascsu-f1kzx8 , ascsu-f1l0a5 , ascsu-f1l0j3 , ascsu-f1l0s5 , ascsu-f1l1m9 , ascsu-f1l2e5 , ascsu-f1l3k2 , ascsu-f1l7s2 , ascsu-f1l145 , ascsu-u1mei8 , ascsu-u1ns34 , ascsu-u1nb30 , ascsu-f1kzg5 , ascsu-u1ntf1 , ascsu-u1nx87 , ascsu-f1l5f0 , ascsu-f1l6n2

Title : A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis - Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713
Author(s) : Leopold SR , Magrini V , Holt NJ , Shaikh N , Mardis ER , Cagno J , Ogura Y , Iguchi A , Hayashi T , Mellmann A , Karch H , Besser TE , Sawyer SA , Whittam TS , Tarr PI
Ref : Proc Natl Acad Sci U S A , 106 :8713 , 2009
Abstract : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713
ESTHER : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713
PubMedSearch : Leopold_2009_Proc.Natl.Acad.Sci.U.S.A_106_8713
PubMedID: 19439656
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , neucr-q7sha3

Title : Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla - Mahowald_2009_Proc.Natl.Acad.Sci.U.S.A_106_5859
Author(s) : Mahowald MA , Rey FE , Seedorf H , Turnbaugh PJ , Fulton RS , Wollam A , Shah N , Wang C , Magrini V , Wilson RK , Cantarel BL , Coutinho PM , Henrissat B , Crock LW , Russell A , VerBerkmoes NC , Hettich RL , Gordon JI
Ref : Proc Natl Acad Sci U S A , 106 :5859 , 2009
Abstract : Mahowald_2009_Proc.Natl.Acad.Sci.U.S.A_106_5859
ESTHER : Mahowald_2009_Proc.Natl.Acad.Sci.U.S.A_106_5859
PubMedSearch : Mahowald_2009_Proc.Natl.Acad.Sci.U.S.A_106_5859
PubMedID: 19321416
Gene_locus related to this paper: eube2-c4z2j4 , eube2-c4z5d5 , eube2-c4z6k4 , eube2-c4z179 , eube2-c4z180 , eubr3-c4z8a6 , eubr3-c4zfm2 , eubr3-c4zhp3 , eubr3-c4zf28

Title : Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach - Chen_2006_Proc.Natl.Acad.Sci.U.S.A_103_5977
Author(s) : Chen SL , Hung CS , Xu J , Reigstad CS , Magrini V , Sabo A , Blasiar D , Bieri T , Meyer RR , Ozersky P , Armstrong JR , Fulton RS , Latreille JP , Spieth J , Hooton TM , Mardis ER , Hultgren SJ , Gordon JI
Ref : Proc Natl Acad Sci U S A , 103 :5977 , 2006
Abstract : Chen_2006_Proc.Natl.Acad.Sci.U.S.A_103_5977
ESTHER : Chen_2006_Proc.Natl.Acad.Sci.U.S.A_103_5977
PubMedSearch : Chen_2006_Proc.Natl.Acad.Sci.U.S.A_103_5977
PubMedID: 16585510
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C2451 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-IROD , ecoli-IROE , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecout-q1r7l6 , yerpe-YBTT

Title : Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution - Hillier_2004_Nature_432_695
Author(s) : Hillier LW , Miller W , Birney E , Warren W , Hardison RC , Ponting CP , Bork P , Burt DW , Groenen MA , Delany ME , Dodgson JB , Chinwalla AT , Cliften PF , Clifton SW , Delehaunty KD , Fronick C , Fulton RS , Graves TA , Kremitzki C , Layman D , Magrini V , McPherson JD , Miner TL , Minx P , Nash WE , Nhan MN , Nelson JO , Oddy LG , Pohl CS , Randall-Maher J , Smith SM , Wallis JW , Yang SP , Romanov MN , Rondelli CM , Paton B , Smith J , Morrice D , Daniels L , Tempest HG , Robertson L , Masabanda JS , Griffin DK , Vignal A , Fillon V , Jacobbson L , Kerje S , Andersson L , Crooijmans RP , Aerts J , van der Poel JJ , Ellegren H , Caldwell RB , Hubbard SJ , Grafham DV , Kierzek AM , McLaren SR , Overton IM , Arakawa H , Beattie KJ , Bezzubov Y , Boardman PE , Bonfield JK , Croning MD , Davies RM , Francis MD , Humphray SJ , Scott CE , Taylor RG , Tickle C , Brown WR , Rogers J , Buerstedde JM , Wilson SA , Stubbs L , Ovcharenko I , Gordon L , Lucas S , Miller MM , Inoko H , Shiina T , Kaufman J , Salomonsen J , Skjoedt K , Ka-Shu Wong G , Wang J , Liu B , Yu J , Yang H , Nefedov M , Koriabine M , deJong PJ , Goodstadt L , Webber C , Dickens NJ , Letunic I , Suyama M , Torrents D , von Mering C , Zdobnov EM , Makova K , Nekrutenko A , Elnitski L , Eswara P , King DC , Yang S , Tyekucheva S , Radakrishnan A , Harris RS , Chiaromonte F , Taylor J , He J , Rijnkels M , Griffiths-Jones S , Ureta-Vidal A , Hoffman MM , Severin J , Searle SM , Law AS , Speed D , Waddington D , Cheng Z , Tuzun E , Eichler E , Bao Z , Flicek P , Shteynberg DD , Brent MR , Bye JM , Huckle EJ , Chatterji S , Dewey C , Pachter L , Kouranov A , Mourelatos Z , Hatzigeorgiou AG , Paterson AH , Ivarie R , Brandstrom M , Axelsson E , Backstrom N , Berlin S , Webster MT , Pourquie O , Reymond A , Ucla C , Antonarakis SE , Long M , Emerson JJ , Betran E , Dupanloup I , Kaessmann H , Hinrichs AS , Bejerano G , Furey TS , Harte RA , Raney B , Siepel A , Kent WJ , Haussler D , Eyras E , Castelo R , Abril JF , Castellano S , Camara F , Parra G , Guigo R , Bourque G , Tesler G , Pevzner PA , Smit A , Fulton LA , Mardis ER , Wilson RK
Ref : Nature , 432 :695 , 2004
Abstract : Hillier_2004_Nature_432_695
ESTHER : Hillier_2004_Nature_432_695
PubMedSearch : Hillier_2004_Nature_432_695
PubMedID: 15592404
Gene_locus related to this paper: chick-a0a1d5pmd9 , chick-b3tzb3 , chick-BCHE , chick-cb043 , chick-d3wgl5 , chick-e1bsm0 , chick-e1bvq6 , chick-e1bwz0 , chick-e1bwz1 , chick-e1byn1 , chick-e1bz81 , chick-e1c0z8 , chick-e1c7p7 , chick-f1nby4 , chick-f1ncz8 , chick-f1ndp3 , chick-f1nep4 , chick-f1nj68 , chick-f1njg6 , chick-f1njk4 , chick-f1njs4 , chick-f1njs5 , chick-f1nk87 , chick-f1nmx9 , chick-f1ntp8 , chick-f1nvg7 , chick-f1nwf2 , chick-f1p1l1 , chick-f1p3j5 , chick-f1p4c6 , chick-f1p508 , chick-fas , chick-h9l0k6 , chick-nlgn1 , chick-NLGN3 , chick-q5f3h8 , chick-q5zhm0 , chick-q5zi81 , chick-q5zij5 , chick-q5zin0 , chick-thyro , chick-f1nrq2 , chick-e1byd4 , chick-e1c2h6 , chick-a0a1d5pk92 , chick-a0a1d5pzg7 , chick-f1nbc2 , chick-f1nf25 , chick-f1nly5 , chick-f1p4h5 , chick-f1nzi7 , chick-f1p5k3 , chick-f1nm35 , chick-a0a1d5pl11 , chick-a0a1d5pj73 , chick-f1nxu6 , chick-a0a1d5nwc0 , chick-e1bxs8 , chick-f1p2g7 , chick-f1nd96

Title : Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid - McClelland_2004_Nat.Genet_36_1268
Author(s) : McClelland M , Sanderson KE , Clifton SW , Latreille P , Porwollik S , Sabo A , Meyer R , Bieri T , Ozersky P , McLellan M , Harkins CR , Wang C , Nguyen C , Berghoff A , Elliott G , Kohlberg S , Strong C , Du F , Carter J , Kremizki C , Layman D , Leonard S , Sun H , Fulton L , Nash W , Miner T , Minx P , Delehaunty K , Fronick C , Magrini V , Nhan M , Warren W , Florea L , Spieth J , Wilson RK
Ref : Nat Genet , 36 :1268 , 2004
Abstract : McClelland_2004_Nat.Genet_36_1268
ESTHER : McClelland_2004_Nat.Genet_36_1268
PubMedSearch : McClelland_2004_Nat.Genet_36_1268
PubMedID: 15531882
Gene_locus related to this paper: salen-OPDB , salty-AES , salty-BIOH , salty-DLHH , salty-ENTF , salty-FES , salty-IROD , salty-IROE , salty-P74847 , salty-PLDB , salty-STM2547 , salty-STM4506 , salty-STY1441 , salty-STY2428 , salty-STY3846 , salty-yafa , salty-YBFF , salty-ycfp , salty-YFBB , salty-YHET , salty-YQIA