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| Title : Atypical homodimerization revealed by the structure of the (S)-enantioselective haloalkane dehalogenase DmmarA from Mycobacterium marinum - Snajdarova_2023_Acta.Crystallogr.D.Struct.Biol__ |
| Author(s) : Snajdarova K , Marques SM , Damborsky J , Bednar D , Marek M |
| Ref : Acta Crystallographica D Struct Biol , : , 2023 |
| Abstract : Snajdarova_2023_Acta.Crystallogr.D.Struct.Biol__ |
| ESTHER : Snajdarova_2023_Acta.Crystallogr.D.Struct.Biol__ |
| PubMedSearch : Snajdarova_2023_Acta.Crystallogr.D.Struct.Biol__ |
| PubMedID: 37860958 |
| Title : Advancing Enzyme's Stability and Catalytic Efficiency through Synergy of Force-Field Calculations, Evolutionary Analysis, and Machine Learning - Kunka_2023_ACS.Catal_13_12506 |
| Author(s) : Kunka A , Marques SM , Havlasek M , Vasina M , Velatova N , Cengelova L , Kovar D , Damborsky J , Marek M , Bednar D , Prokop Z |
| Ref : ACS Catal , 13 :12506 , 2023 |
| Abstract : Kunka_2023_ACS.Catal_13_12506 |
| ESTHER : Kunka_2023_ACS.Catal_13_12506 |
| PubMedSearch : Kunka_2023_ACS.Catal_13_12506 |
| PubMedID: 37822856 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Tools for computational design and high-throughput screening of therapeutic enzymes - Vasina_2022_Adv.Drug.Deliv.Rev_183_114143 |
| Author(s) : Vasina M , Velecky J , Planas-Iglesias J , Marques SM , Skarupova J , Damborsky J , Bednar D , Mazurenko S , Prokop Z |
| Ref : Adv Drug Deliv Rev , 183 :114143 , 2022 |
| Abstract : Vasina_2022_Adv.Drug.Deliv.Rev_183_114143 |
| ESTHER : Vasina_2022_Adv.Drug.Deliv.Rev_183_114143 |
| PubMedSearch : Vasina_2022_Adv.Drug.Deliv.Rev_183_114143 |
| PubMedID: 35167900 |
| Title : Web-based tools for computational enzyme design - Marques_2021_Curr.Opin.Struct.Biol_69_19 |
| Author(s) : Marques SM , Planas-Iglesias J , Damborsky J |
| Ref : Current Opinion in Structural Biology , 69 :19 , 2021 |
| Abstract : Marques_2021_Curr.Opin.Struct.Biol_69_19 |
| ESTHER : Marques_2021_Curr.Opin.Struct.Biol_69_19 |
| PubMedSearch : Marques_2021_Curr.Opin.Struct.Biol_69_19 |
| PubMedID: 33667757 |
| Title : Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers - Markova_2021_ACS.Catal_11_12864 |
| Author(s) : Markova K , Kunka A , Chmelova K , Havlasek M , Babkova P , Marques SM , Vasina M , Planas-Iglesias J , Chaloupkova R , Bednar D , Prokop Z , Damborsky J , Marek M |
| Ref : ACS Catal , 11 :12864 , 2021 |
| Abstract : Markova_2021_ACS.Catal_11_12864 |
| ESTHER : Markova_2021_ACS.Catal_11_12864 |
| PubMedSearch : Markova_2021_ACS.Catal_11_12864 |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Decoding the intricate network of molecular interactions of a hyperstable engineered biocatalyst - Markova_2020_Chem.Sci_11_11162 |
| Author(s) : Markova K , Chmelova K , Marques SM , Carpentier P , Bednar D , Damborsky J , Marek M |
| Ref : Chem Sci , 11 :11162 , 2020 |
| Abstract : Markova_2020_Chem.Sci_11_11162 |
| ESTHER : Markova_2020_Chem.Sci_11_11162 |
| PubMedSearch : Markova_2020_Chem.Sci_11_11162 |
| PubMedID: 34094357 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Impact of the access tunnel engineering on catalysis is strictly ligand-specific - Kaushik_2018_FEBS.J_285_1456 |
| Author(s) : Kaushik S , Marques SM , Khirsariya P , Paruch K , Libichova L , Brezovsky J , Prokop Z , Chaloupkova R , Damborsky J |
| Ref : Febs J , 285 :1456 , 2018 |
| Abstract : Kaushik_2018_FEBS.J_285_1456 |
| ESTHER : Kaushik_2018_FEBS.J_285_1456 |
| PubMedSearch : Kaushik_2018_FEBS.J_285_1456 |
| PubMedID: 29478278 |
| Title : Computational Study of Protein-Ligand Unbinding for Enzyme Engineering - Marques_2018_Front.Chem_6_650 |
| Author(s) : Marques SM , Bednar D , Damborsky J |
| Ref : Front Chem , 6 :650 , 2018 |
| Abstract : Marques_2018_Front.Chem_6_650 |
| ESTHER : Marques_2018_Front.Chem_6_650 |
| PubMedSearch : Marques_2018_Front.Chem_6_650 |
| PubMedID: 30671430 |
| Title : Catalytic Cycle of Haloalkane Dehalogenases Toward Unnatural Substrates Explored by Computational Modeling - Marques_2017_J.Chem.Inf.Model_57_1970 |
| Author(s) : Marques SM , Dunajova Z , Prokop Z , Chaloupkova R , Brezovsky J , Damborsky J |
| Ref : J Chem Inf Model , 57 :1970 , 2017 |
| Abstract : Marques_2017_J.Chem.Inf.Model_57_1970 |
| ESTHER : Marques_2017_J.Chem.Inf.Model_57_1970 |
| PubMedSearch : Marques_2017_J.Chem.Inf.Model_57_1970 |
| PubMedID: 28696117 |
| Title : Quantitative analysis of organophosphorus pesticides in freshwater using an optimized firefly luciferase-based coupled bioluminescent assay - Marques_2014_Luminescence_29_378 |
| Author(s) : Marques SM , Esteves da Silva JC |
| Ref : Luminescence , 29 :378 , 2014 |
| Abstract : Marques_2014_Luminescence_29_378 |
| ESTHER : Marques_2014_Luminescence_29_378 |
| PubMedSearch : Marques_2014_Luminescence_29_378 |
| PubMedID: 23832808 |
| Title : Design, synthesis and neuroprotective evaluation of novel tacrine-benzothiazole hybrids as multi-targeted compounds against Alzheimer's disease - Keri_2013_Bioorg.Med.Chem_21_4559 |
| Author(s) : Keri RS , Quintanova C , Marques SM , Esteves AR , Cardoso SM , Santos MA |
| Ref : Bioorganic & Medicinal Chemistry , 21 :4559 , 2013 |
| Abstract : Keri_2013_Bioorg.Med.Chem_21_4559 |
| ESTHER : Keri_2013_Bioorg.Med.Chem_21_4559 |
| PubMedSearch : Keri_2013_Bioorg.Med.Chem_21_4559 |
| PubMedID: 23768661 |
| Title : Multifunctional iron-chelators with protective roles against neurodegenerative diseases - Nunes_2013_Dalton.Trans_42_6058 |
| Author(s) : Nunes A , Marques SM , Quintanova C , Silva DF , Cardoso SM , Chaves S , Santos MA |
| Ref : Dalton Trans , 42 :6058 , 2013 |
| Abstract : Nunes_2013_Dalton.Trans_42_6058 |
| ESTHER : Nunes_2013_Dalton.Trans_42_6058 |
| PubMedSearch : Nunes_2013_Dalton.Trans_42_6058 |
| PubMedID: 23487286 |
| Title : Bifunctional phenolic-choline conjugates as anti-oxidants and acetylcholinesterase inhibitors - Sebestik_2011_J.Enzyme.Inhib.Med.Chem_26_485 |
| Author(s) : Sebestik J , Marques SM , Fale PL , Santos S , Arduino DM , Cardoso SM , Oliveira CR , Serralheiro ML , Santos MA |
| Ref : J Enzyme Inhib Med Chem , 26 :485 , 2011 |
| Abstract : Sebestik_2011_J.Enzyme.Inhib.Med.Chem_26_485 |
| ESTHER : Sebestik_2011_J.Enzyme.Inhib.Med.Chem_26_485 |
| PubMedSearch : Sebestik_2011_J.Enzyme.Inhib.Med.Chem_26_485 |
| PubMedID: 21067438 |