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References (36)

Title : Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a - Stolyar_2014_Genome.Announc_2_e01060
Author(s) : Stolyar S , Liu Z , Thiel V , Tomsho LP , Pinel N , Nelson WC , Lindemann SR , Romine MF , Haruta S , Schuster SC , Bryant DA , Fredrickson JK
Ref : Genome Announc , 2 : , 2014
Abstract : Stolyar_2014_Genome.Announc_2_e01060
ESTHER : Stolyar_2014_Genome.Announc_2_e01060
PubMedSearch : Stolyar_2014_Genome.Announc_2_e01060
PubMedID: 24482507
Gene_locus related to this paper: 9chro-v5v7l5

Title : Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils - Ward_2009_Appl.Environ.Microbiol_75_2046
Author(s) : Ward NL , Challacombe JF , Janssen PH , Henrissat B , Coutinho PM , Wu M , Xie G , Haft DH , Sait M , Badger J , Barabote RD , Bradley B , Brettin TS , Brinkac LM , Bruce D , Creasy T , Daugherty SC , Davidsen TM , DeBoy RT , Detter JC , Dodson RJ , Durkin AS , Ganapathy A , Gwinn-Giglio M , Han CS , Khouri H , Kiss H , Kothari SP , Madupu R , Nelson KE , Nelson WC , Paulsen I , Penn K , Ren Q , Rosovitz MJ , Selengut JD , Shrivastava S , Sullivan SA , Tapia R , Thompson LS , Watkins KL , Yang Q , Yu C , Zafar N , Zhou L , Kuske CR
Ref : Applied Environmental Microbiology , 75 :2046 , 2009
Abstract : Ward_2009_Appl.Environ.Microbiol_75_2046
ESTHER : Ward_2009_Appl.Environ.Microbiol_75_2046
PubMedSearch : Ward_2009_Appl.Environ.Microbiol_75_2046
PubMedID: 19201974
Gene_locus related to this paper: korve-q1ihr9 , korve-q1ii02 , korve-q1iit0 , korve-q1ilk4 , korve-q1imj9 , korve-q1ims4 , korve-q1iqj0 , korve-q1isy7 , korve-q1itj5 , korve-q1itz6 , korve-q1ivc8 , acic5-c1f1u6 , acic5-c1f2i7 , acic5-c1f4m6 , acic5-c1f4y4 , acic5-c1f5a7 , acic5-c1f5u2 , acic5-c1f7a9 , acic5-c1f7x6 , acic5-c1f8y9 , acic5-c1f9m2 , acic5-c1f594 , acic5-c1f609 , acic5-c1f692 , acic5-c1f970 , acic5-c1fa52 , korve-q1iiw2 , korve-q1ivn9 , solue-q01nb0 , solue-q01qj6 , solue-q01r37 , solue-q01rq8 , solue-q01rz0 , solue-q01t44 , solue-q01t57 , solue-q01ts5 , solue-q01tv4 , solue-q01vd8 , solue-q01vr3 , solue-q01vw5 , solue-q01w12 , solue-q01wt9 , solue-q01y40 , solue-q01ym8 , solue-q01z24 , solue-q01z97 , solue-q01zl4 , solue-q01zm0 , solue-q01zm5 , solue-q01zm7 , solue-q02aa4 , solue-q02ab9 , solue-q02b72 , solue-q02bs8 , solue-q02bt7 , solue-q02cp0 , solue-q02d61 , solue-q020h3 , solue-q020i8 , solue-q021i6 , solue-q022b1 , solue-q022p8 , solue-q022q2 , solue-q022q3 , solue-q022x2 , solue-q022x5 , solue-q022x6 , solue-q022x8 , solue-q023e7 , solue-q024d9 , solue-q025c1 , solue-q026j1 , solue-q026k6 , solue-q026r6 , solue-q027p2 , solue-q027r8 , solue-q01zt5 , korve-q1itw6 , solue-q01yh7 , solue-q02ad6 , korve-q1imj6 , korve-q1iuf6 , acic5-c1f891 , solue-q026h7

Title : Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus - Myers_2007_Nat.Biotechnol_25_569
Author(s) : Myers GS , Parker D , Al-Hasani K , Kennan RM , Seemann T , Ren Q , Badger JH , Selengut JD , DeBoy RT , Tettelin H , Boyce JD , McCarl VP , Han X , Nelson WC , Madupu R , Mohamoud Y , Holley T , Fedorova N , Khouri H , Bottomley SP , Whittington RJ , Adler B , Songer JG , Rood JI , Paulsen IT
Ref : Nat Biotechnol , 25 :569 , 2007
Abstract : Myers_2007_Nat.Biotechnol_25_569
ESTHER : Myers_2007_Nat.Biotechnol_25_569
PubMedSearch : Myers_2007_Nat.Biotechnol_25_569
PubMedID: 17468768
Gene_locus related to this paper: dicnv-a5evg0 , dicnv-a5ewn0 , dicnv-a5ewp3

Title : Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium - Bryant_2007_Science_317_523
Author(s) : Bryant DA , Costas AM , Maresca JA , Chew AG , Klatt CG , Bateson MM , Tallon LJ , Hostetler J , Nelson WC , Heidelberg JF , Ward DM
Ref : Science , 317 :523 , 2007
Abstract : Bryant_2007_Science_317_523
ESTHER : Bryant_2007_Science_317_523
PubMedSearch : Bryant_2007_Science_317_523
PubMedID: 17656724
Gene_locus related to this paper: 9bact-a8djg9

Title : Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens - Myers_2006_Genome.Res_16_1031
Author(s) : Myers GS , Rasko DA , Cheung JK , Ravel J , Seshadri R , DeBoy RT , Ren Q , Varga J , Awad MM , Brinkac LM , Daugherty SC , Haft DH , Dodson RJ , Madupu R , Nelson WC , Rosovitz MJ , Sullivan SA , Khouri H , Dimitrov GI , Watkins KL , Mulligan S , Benton J , Radune D , Fisher DJ , Atkins HS , Hiscox T , Jost BH , Billington SJ , Songer JG , McClane BA , Titball RW , Rood JI , Melville SB , Paulsen IT
Ref : Genome Res , 16 :1031 , 2006
Abstract : Myers_2006_Genome.Res_16_1031
ESTHER : Myers_2006_Genome.Res_16_1031
PubMedSearch : Myers_2006_Genome.Res_16_1031
PubMedID: 16825665
Gene_locus related to this paper: clope-CPE0307 , clope-CPE0432 , clope-CPE1581 , clope-CPE1596 , clope-CPE1989 , clope-CPE2231 , clope-lipa , clope-LIPB , clope-PLDB

Title : Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment - Palenik_2006_Proc.Natl.Acad.Sci.U.S.A_103_13555
Author(s) : Palenik B , Ren Q , Dupont CL , Myers GS , Heidelberg JF , Badger JH , Madupu R , Nelson WC , Brinkac LM , Dodson RJ , Durkin AS , Daugherty SC , Sullivan SA , Khouri H , Mohamoud Y , Halpin R , Paulsen IT
Ref : Proc Natl Acad Sci U S A , 103 :13555 , 2006
Abstract : Palenik_2006_Proc.Natl.Acad.Sci.U.S.A_103_13555
ESTHER : Palenik_2006_Proc.Natl.Acad.Sci.U.S.A_103_13555
PubMedSearch : Palenik_2006_Proc.Natl.Acad.Sci.U.S.A_103_13555
PubMedID: 16938853
Gene_locus related to this paper: syns3-q0i8r7 , syns3-q0i9w2 , syns3-q0i996 , syns3-q0ia13 , syns3-q0ia55 , syns3-q0ib73 , syns3-q0ibm2 , syns3-q0ibp1 , syns3-q0iby1 , syns9-q3ax89 , syns3-q0ibv4

Title : Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5 - Paulsen_2005_Nat.Biotechnol_23_873
Author(s) : Paulsen IT , Press CM , Ravel J , Kobayashi DY , Myers GS , Mavrodi DV , DeBoy RT , Seshadri R , Ren Q , Madupu R , Dodson RJ , Durkin AS , Brinkac LM , Daugherty SC , Sullivan SA , Rosovitz MJ , Gwinn ML , Zhou L , Schneider DJ , Cartinhour SW , Nelson WC , Weidman J , Watkins K , Tran K , Khouri H , Pierson EA , Pierson LS, 3rd , Thomashow LS , Loper JE
Ref : Nat Biotechnol , 23 :873 , 2005
Abstract : Paulsen_2005_Nat.Biotechnol_23_873
ESTHER : Paulsen_2005_Nat.Biotechnol_23_873
PubMedSearch : Paulsen_2005_Nat.Biotechnol_23_873
PubMedID: 15980861
Gene_locus related to this paper: psef5-metx , psef5-q4k3c9 , psef5-q4k4b4 , psef5-q4k4t4 , psef5-q4k4u7 , psef5-q4k4y2 , psef5-q4k5b5 , psef5-q4k5k6 , psef5-q4k5w4 , psef5-q4k6z9 , psef5-q4k7i6 , psef5-q4k7u9 , psef5-q4k8j2 , psef5-q4k9i3 , psef5-q4k458 , psef5-q4k713 , psef5-q4k717 , psef5-q4k873 , psef5-q4k906 , psef5-q4k982 , psef5-q4k989 , psef5-q4k993 , psef5-q4kax4 , psef5-q4kay8 , psef5-q4kaz0 , psef5-q4kaz4 , psef5-q4kb21 , psef5-q4kbd7 , psef5-q4kbs3 , psef5-q4kbs6 , psef5-q4kc18 , psef5-q4kc21 , psef5-q4kcd3 , psef5-q4kch8 , psef5-q4kcj3 , psef5-q4kck4 , psef5-q4kcn8 , psef5-q4kcq2 , psef5-q4kcx3 , psef5-q4kd54 , psef5-q4kda1 , psef5-q4kdb4 , psef5-q4ke18 , psef5-q4keh1 , psef5-q4kej0 , psef5-q4keq4 , psef5-q4kes9 , psef5-q4kf14 , psef5-q4kfj4 , psef5-q4kfw0 , psef5-q4kfw1 , psef5-q4kfx7 , psef5-q4kgg3 , psef5-q4kgj9 , psef5-q4kgs6 , psef5-q4kh30 , psef5-q4kha2 , psef5-q4khf1 , psef5-q4khl0 , psef5-q4khv5 , psef5-q4ki42 , psef5-q4kj24 , psef5-q4kj95 , psef5-q4kjk5 , psef5-q4kjk7 , psef5-q4kjm8 , psef5-q4kjt7 , psef5-q4kk20 , psef5-q4kk22 , psef5-q4kk59 , psef5-q4kkf7 , psefl-PLTG , psepf-PHAZ , psef5-q4kfd8

Title : Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes - Seshadri_2005_Science_307_105
Author(s) : Seshadri R , Adrian L , Fouts DE , Eisen JA , Phillippy AM , Methe BA , Ward NL , Nelson WC , DeBoy RT , Khouri HM , Kolonay JF , Dodson RJ , Daugherty SC , Brinkac LM , Sullivan SA , Madupu R , Nelson KE , Kang KH , Impraim M , Tran K , Robinson JM , Forberger HA , Fraser CM , Zinder SH , Heidelberg JF
Ref : Science , 307 :105 , 2005
Abstract : Seshadri_2005_Science_307_105
ESTHER : Seshadri_2005_Science_307_105
PubMedSearch : Seshadri_2005_Science_307_105
PubMedID: 15637277
Gene_locus related to this paper: dehm1-q3z6q3 , dehm1-q3z6x9 , dehm1-q3z6z2 , dehm1-q3z8f3 , dehm1-q3za50

Title : Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition - Joardar_2005_J.Bacteriol_187_6488
Author(s) : Joardar V , Lindeberg M , Jackson RW , Selengut J , Dodson R , Brinkac LM , Daugherty SC , Deboy R , Durkin AS , Giglio MG , Madupu R , Nelson WC , Rosovitz MJ , Sullivan S , Crabtree J , Creasy T , Davidsen T , Haft DH , Zafar N , Zhou L , Halpin R , Holley T , Khouri H , Feldblyum T , White O , Fraser CM , Chatterjee AK , Cartinhour S , Schneider DJ , Mansfield J , Collmer A , Buell CR
Ref : Journal of Bacteriology , 187 :6488 , 2005
Abstract : Joardar_2005_J.Bacteriol_187_6488
ESTHER : Joardar_2005_J.Bacteriol_187_6488
PubMedSearch : Joardar_2005_J.Bacteriol_187_6488
PubMedID: 16159782
Gene_locus related to this paper: pse14-q48cb3 , pse14-q48ck7 , pse14-q48cs3 , pse14-q48ct2 , pse14-q48d82 , pse14-q48da3 , pse14-q48dj9 , pse14-q48dq5 , pse14-q48e33 , pse14-q48es1 , pse14-q48f84 , pse14-q48fg2 , pse14-q48g47 , pse14-q48g51 , pse14-q48gq9 , pse14-q48h40 , pse14-q48ha4 , pse14-q48hb4 , pse14-q48he1 , pse14-q48hq0 , pse14-q48hq2 , pse14-q48ia0 , pse14-q48im0 , pse14-q48j48 , pse14-q48ji2 , pse14-q48k54 , pse14-q48k55 , pse14-q48k63 , pse14-q48kc1 , pse14-q48kt9 , pse14-q48ku0 , pse14-q48lb6 , pse14-q48lj1 , pse14-q48ln2 , pse14-q48m56 , pse14-q48mh5 , pse14-q48mq7 , pse14-q48nt0 , pse14-q48p24 , pse14-q48pi7 , pse14-q48pi8 , pse14-q48pi9 , pse14-q48pq2 , pse14-q48pq5 , psesm-METX , psesm-q87y20 , psesm-q889k3 , psesy-PIP , psesy-PSPTO0162 , psesy-PSPTO1766 , psesy-PSPTO2134 , psesy-PSPTO3135 , pseu2-q4zwv7 , psesg-e7p3i0

Title : Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901 - Wu_2005_PLoS.Genet_1_e65
Author(s) : Wu M , Ren Q , Durkin AS , Daugherty SC , Brinkac LM , Dodson RJ , Madupu R , Sullivan SA , Kolonay JF , Haft DH , Nelson WC , Tallon LJ , Jones KM , Ulrich LE , Gonzalez JM , Zhulin IB , Robb FT , Eisen JA
Ref : PLoS Genet , 1 :e65 , 2005
Abstract : Wu_2005_PLoS.Genet_1_e65
ESTHER : Wu_2005_PLoS.Genet_1_e65
PubMedSearch : Wu_2005_PLoS.Genet_1_e65
PubMedID: 16311624
Gene_locus related to this paper: carhz-metx , carhz-q3abd5 , carhz-q3adp4

Title : Serendipitous discovery of Wolbachia genomes in multiple Drosophila species - Salzberg_2005_Genome.Biol_6_R23
Author(s) : Salzberg SL , Dunning Hotopp JC , Delcher AL , Pop M , Smith DR , Eisen MB , Nelson WC
Ref : Genome Biol , 6 :R23 , 2005
Abstract : Salzberg_2005_Genome.Biol_6_R23
ESTHER : Salzberg_2005_Genome.Biol_6_R23
PubMedSearch : Salzberg_2005_Genome.Biol_6_R23
PubMedID: 15774024
Gene_locus related to this paper: wolpm-q73gf0 , wolpm-q73gx7

Title : Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath) - Ward_2004_PLoS.Biol_2_e303
Author(s) : Ward N , Larsen O , Sakwa J , Bruseth L , Khouri H , Durkin AS , Dimitrov G , Jiang L , Scanlan D , Kang KH , Lewis M , Nelson KE , Methe B , Wu M , Heidelberg JF , Paulsen IT , Fouts D , Ravel J , Tettelin H , Ren Q , Read T , DeBoy RT , Seshadri R , Salzberg SL , Jensen HB , Birkeland NK , Nelson WC , Dodson RJ , Grindhaug SH , Holt I , Eidhammer I , Jonasen I , Vanaken S , Utterback T , Feldblyum TV , Fraser CM , Lillehaug JR , Eisen JA
Ref : PLoS Biol , 2 :e303 , 2004
Abstract : Ward_2004_PLoS.Biol_2_e303
ESTHER : Ward_2004_PLoS.Biol_2_e303
PubMedSearch : Ward_2004_PLoS.Biol_2_e303
PubMedID: 15383840
Gene_locus related to this paper: metca-q60a38 , metca-q60bu6 , metca-q60cn0 , metca-q605j8 , metca-q606x9 , metca-q607f7 , metca-q607m2 , metca-q609v0

Title : Structural flexibility in the Burkholderia mallei genome - Nierman_2004_Proc.Natl.Acad.Sci.U.S.A_101_14246
Author(s) : Nierman WC , DeShazer D , Kim HS , Tettelin H , Nelson KE , Feldblyum T , Ulrich RL , Ronning CM , Brinkac LM , Daugherty SC , Davidsen TD , DeBoy RT , Dimitrov G , Dodson RJ , Durkin AS , Gwinn ML , Haft DH , Khouri H , Kolonay JF , Madupu R , Mohammoud Y , Nelson WC , Radune D , Romero CM , Sarria S , Selengut J , Shamblin C , Sullivan SA , White O , Yu Y , Zafar N , Zhou L , Fraser CM
Ref : Proc Natl Acad Sci U S A , 101 :14246 , 2004
Abstract : Nierman_2004_Proc.Natl.Acad.Sci.U.S.A_101_14246
ESTHER : Nierman_2004_Proc.Natl.Acad.Sci.U.S.A_101_14246
PubMedSearch : Nierman_2004_Proc.Natl.Acad.Sci.U.S.A_101_14246
PubMedID: 15377793
Gene_locus related to this paper: burma-a5j5w8 , burma-a5tj72 , burma-a5tq93 , burma-metx , burma-q62a61 , burma-q62ar2.1 , burma-q62ar2.2 , burma-q62ax8 , burma-q62b60 , burma-q62b79 , burma-q62bh9 , burma-q62bl4 , burma-q62bl7 , burma-q62c00 , burma-q62cg5 , burma-q62d41 , burma-q62d56 , burma-q62d83 , burma-q62dg2 , burma-q62du7 , burma-q62e67 , burma-q62eb8 , burma-q62ed8 , burma-q62f28 , burma-q62fx7 , burma-q62g26 , burma-q62gx9 , burma-q62gy2 , burma-q62hq2 , burma-q62i62 , burma-q62ib8 , burma-q62ie8 , burma-q62j07 , burma-q62j15 , burma-q62jn5 , burma-q62jy7 , burma-q62kb7 , burma-q62kg0 , burma-q62kh9 , burma-q62lp7 , burma-q62m40 , burma-q62mc3 , burma-q62mf4 , burma-q62mq7 , burma-q629m1 , burma-q629p4 , burma-q629u0 , burps-q3v7s4 , burps-hboh

Title : Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements - Wu_2004_PLoS.Biol_2_E69
Author(s) : Wu M , Sun LV , Vamathevan J , Riegler M , Deboy R , Brownlie JC , McGraw EA , Martin W , Esser C , Ahmadinejad N , Wiegand C , Madupu R , Beanan MJ , Brinkac LM , Daugherty SC , Durkin AS , Kolonay JF , Nelson WC , Mohamoud Y , Lee P , Berry K , Young MB , Utterback T , Weidman J , Nierman WC , Paulsen IT , Nelson KE , Tettelin H , O'Neill SL , Eisen JA
Ref : PLoS Biol , 2 :E69 , 2004
Abstract : Wu_2004_PLoS.Biol_2_E69
ESTHER : Wu_2004_PLoS.Biol_2_E69
PubMedSearch : Wu_2004_PLoS.Biol_2_E69
PubMedID: 15024419
Gene_locus related to this paper: wolpm-q73gf0 , wolpm-q73gx7

Title : The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough - Heidelberg_2004_Nat.Biotechnol_22_554
Author(s) : Heidelberg JF , Seshadri R , Haveman SA , Hemme CL , Paulsen IT , Kolonay JF , Eisen JA , Ward N , Methe B , Brinkac LM , Daugherty SC , DeBoy RT , Dodson RJ , Durkin AS , Madupu R , Nelson WC , Sullivan SA , Fouts D , Haft DH , Selengut J , Peterson JD , Davidsen TM , Zafar N , Zhou L , Radune D , Dimitrov G , Hance M , Tran K , Khouri H , Gill J , Utterback TR , Feldblyum TV , Wall JD , Voordouw G , Fraser CM
Ref : Nat Biotechnol , 22 :554 , 2004
Abstract : Heidelberg_2004_Nat.Biotechnol_22_554
ESTHER : Heidelberg_2004_Nat.Biotechnol_22_554
PubMedSearch : Heidelberg_2004_Nat.Biotechnol_22_554
PubMedID: 15077118
Gene_locus related to this paper: desvh-q72b36 , desvh-q72ed6 , desvh-q728i3 , desvh-q729w4 , desvh-q72b15

Title : Whole genome comparisons of serotype 4b and 1\/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species - Nelson_2004_Nucleic.Acids.Res_32_2386
Author(s) : Nelson KE , Fouts DE , Mongodin EF , Ravel J , DeBoy RT , Kolonay JF , Rasko DA , Angiuoli SV , Gill SR , Paulsen IT , Peterson J , White O , Nelson WC , Nierman W , Beanan MJ , Brinkac LM , Daugherty SC , Dodson RJ , Durkin AS , Madupu R , Haft DH , Selengut J , Van Aken S , Khouri H , Fedorova N , Forberger H , Tran B , Kathariou S , Wonderling LD , Uhlich GA , Bayles DO , Luchansky JB , Fraser CM
Ref : Nucleic Acids Research , 32 :2386 , 2004
Abstract : Nelson_2004_Nucleic.Acids.Res_32_2386
ESTHER : Nelson_2004_Nucleic.Acids.Res_32_2386
PubMedSearch : Nelson_2004_Nucleic.Acids.Res_32_2386
PubMedID: 15115801
Gene_locus related to this paper: lismc-c1l0d9 , lismf-q71xq4 , lismo-LMO0110 , lismo-LMO0493 , lismo-LMO0580 , lismo-LMO0752 , lismo-LMO0760 , lismo-LMO0857 , lismo-LMO0950 , lismo-LMO0951 , lismo-LMO0977 , lismo-LMO1128 , lismo-LMO1258 , lismo-LMO1674 , lismo-LMO2089 , lismo-LMO2109 , lismo-LMO2433 , lismo-LMO2450 , lismo-LMO2452 , lismo-LMO2453 , lismo-LMO2578 , lismo-LMO2677 , lismo-LMO2755 , lismo-metx

Title : Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae - Read_2003_Nucleic.Acids.Res_31_2134
Author(s) : Read TD , Myers GS , Brunham RC , Nelson WC , Paulsen IT , Heidelberg J , Holtzapple E , Khouri H , Federova NB , Carty HA , Umayam LA , Haft DH , Peterson J , Beanan MJ , White O , Salzberg SL , Hsia RC , McClarty G , Rank RG , Bavoil PM , Fraser CM
Ref : Nucleic Acids Research , 31 :2134 , 2003
Abstract : Read_2003_Nucleic.Acids.Res_31_2134
ESTHER : Read_2003_Nucleic.Acids.Res_31_2134
PubMedSearch : Read_2003_Nucleic.Acids.Res_31_2134
PubMedID: 12682364
Gene_locus related to this paper: chlca-CCA00443 , chlca-CCA00510 , chlca-CCA00609 , chlca-CCA00614 , chlcv-p94660

Title : Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83 - Nelson_2003_J.Bacteriol_185_5591
Author(s) : Nelson KE , Fleischmann RD , DeBoy RT , Paulsen IT , Fouts DE , Eisen JA , Daugherty SC , Dodson RJ , Durkin AS , Gwinn M , Haft DH , Kolonay JF , Nelson WC , Mason T , Tallon L , Gray J , Granger D , Tettelin H , Dong H , Galvin JL , Duncan MJ , Dewhirst FE , Fraser CM
Ref : Journal of Bacteriology , 185 :5591 , 2003
Abstract : Nelson_2003_J.Bacteriol_185_5591
ESTHER : Nelson_2003_J.Bacteriol_185_5591
PubMedSearch : Nelson_2003_J.Bacteriol_185_5591
PubMedID: 12949112
Gene_locus related to this paper: 9gamm-q4a538 , porgi-DPP , porgi-q7mtk3 , porgi-q7mu18 , porgi-q7mub3 , porgi-q7muw6 , porgi-q7mvp4 , porgi-q7mwa7 , porgi-q7mx03

Title : The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000 - Buell_2003_Proc.Natl.Acad.Sci.U.S.A_100_10181
Author(s) : Buell CR , Joardar V , Lindeberg M , Selengut J , Paulsen IT , Gwinn ML , Dodson RJ , DeBoy RT , Durkin AS , Kolonay JF , Madupu R , Daugherty S , Brinkac L , Beanan MJ , Haft DH , Nelson WC , Davidsen T , Zafar N , Zhou L , Liu J , Yuan Q , Khouri H , Fedorova N , Tran B , Russell D , Berry K , Utterback T , Van Aken SE , Feldblyum TV , D'Ascenzo M , Deng WL , Ramos AR , Alfano JR , Cartinhour S , Chatterjee AK , Delaney TP , Lazarowitz SG , Martin GB , Schneider DJ , Tang X , Bender CL , White O , Fraser CM , Collmer A
Ref : Proc Natl Acad Sci U S A , 100 :10181 , 2003
Abstract : Buell_2003_Proc.Natl.Acad.Sci.U.S.A_100_10181
ESTHER : Buell_2003_Proc.Natl.Acad.Sci.U.S.A_100_10181
PubMedSearch : Buell_2003_Proc.Natl.Acad.Sci.U.S.A_100_10181
PubMedID: 12928499
Gene_locus related to this paper: pse14-q48ia0 , psesm-IRP1 , psesm-METX , psesm-q87y20 , psesm-q88a39 , psesm-q881b4 , psesm-q889k3 , psesy-BIOH , psesy-CFA7 , psesy-CFA9 , psesy-CMAT , psesy-ESTA , psesy-IRP4 , psesy-PHAB , psesy-PHAC , psesy-PHAG1 , psesy-PHAG2 , psesy-PIP , psesy-PSPTO0162 , psesy-PSPTO0421 , psesy-PSPTO0508 , psesy-PSPTO0675 , psesy-PSPTO0715 , psesy-PSPTO1154 , psesy-PSPTO1504 , psesy-PSPTO1559 , psesy-PSPTO1580 , psesy-PSPTO1604 , psesy-PSPTO1677 , psesy-PSPTO1766 , psesy-PSPTO1863 , psesy-PSPTO2042 , psesy-PSPTO2134 , psesy-PSPTO2150 , psesy-PSPTO2209 , psesy-PSPTO2217 , psesy-PSPTO2218 , psesy-PSPTO2293 , psesy-PSPTO2495 , psesy-PSPTO2674 , psesy-PSPTO2830 , psesy-PSPTO3135 , psesy-PSPTO3138 , psesy-PSPTO3264 , psesy-PSPTO3282 , psesy-PSPTO3306 , psesy-PSPTO3485 , psesy-PSPTO3572 , psesy-PSPTO3911 , psesy-PSPTO4089 , psesy-PSPTO4178 , psesy-PSPTO4277 , psesy-PSPTO4430 , psesy-PSPTO4519 , psesy-PSPTO4540 , psesy-PSPTO4699 , psesy-PSPTO4708 , psesy-PSPTO4781 , psesy-PSPTO4843 , psesy-PSPTO4964 , psesy-PSPTO5218 , psesy-PSPTO5299 , psesy-PSPTO5448 , psesy-PSPTO5537 , psesy-SYLD , psesy-SYPC , psesy-SYRE , psesm-q87v84

Title : Complete genome sequence of the Q-fever pathogen Coxiella burnetii - Seshadri_2003_Proc.Natl.Acad.Sci.U.S.A_100_5455
Author(s) : Seshadri R , Paulsen IT , Eisen JA , Read TD , Nelson KE , Nelson WC , Ward NL , Tettelin H , Davidsen TM , Beanan MJ , DeBoy RT , Daugherty SC , Brinkac LM , Madupu R , Dodson RJ , Khouri HM , Lee KH , Carty HA , Scanlan D , Heinzen RA , Thompson HA , Samuel JE , Fraser CM , Heidelberg JF
Ref : Proc Natl Acad Sci U S A , 100 :5455 , 2003
Abstract : Seshadri_2003_Proc.Natl.Acad.Sci.U.S.A_100_5455
ESTHER : Seshadri_2003_Proc.Natl.Acad.Sci.U.S.A_100_5455
PubMedSearch : Seshadri_2003_Proc.Natl.Acad.Sci.U.S.A_100_5455
PubMedID: 12704232
Gene_locus related to this paper: coxbu-BIOH , coxbu-CBU0752 , coxbu-CBU1119 , coxbu-CBU1225 , coxbu-CBU1529 , coxbu-CBU1769 , coxbu-CBU1975

Title : The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria - Read_2003_Nature_423_81
Author(s) : Read TD , Peterson SN , Tourasse N , Baillie LW , Paulsen IT , Nelson KE , Tettelin H , Fouts DE , Eisen JA , Gill SR , Holtzapple EK , Okstad OA , Helgason E , Rilstone J , Wu M , Kolonay JF , Beanan MJ , Dodson RJ , Brinkac LM , Gwinn M , DeBoy RT , Madpu R , Daugherty SC , Durkin AS , Haft DH , Nelson WC , Peterson JD , Pop M , Khouri HM , Radune D , Benton JL , Mahamoud Y , Jiang L , Hance IR , Weidman JF , Berry KJ , Plaut RD , Wolf AM , Watkins KL , Nierman WC , Hazen A , Cline R , Redmond C , Thwaite JE , White O , Salzberg SL , Thomason B , Friedlander AM , Koehler TM , Hanna PC , Kolsto AB , Fraser CM
Ref : Nature , 423 :81 , 2003
Abstract : Read_2003_Nature_423_81
ESTHER : Read_2003_Nature_423_81
PubMedSearch : Read_2003_Nature_423_81
PubMedID: 12721629
Gene_locus related to this paper: bacan-BA0160 , bacan-BA0950 , bacan-BA0954 , bacan-BA1019 , bacan-BA1242 , bacan-BA1727 , bacan-BA1747 , bacan-BA1866 , bacan-BA1914 , bacan-BA2015 , bacan-BA2392 , bacan-BA2417 , bacan-BA2557 , bacan-BA2607 , bacan-BA2687 , bacan-BA2694 , bacan-BA2738 , bacan-BA2865 , bacan-BA3068 , bacan-BA3165 , bacan-BA3178 , bacan-BA3187 , bacan-BA3343 , bacan-BA3372 , bacan-BA3703 , bacan-BA3805 , bacan-BA3863 , bacan-BA3877 , bacan-BA3887 , bacan-BA4324 , bacan-BA4328 , bacan-BA4338 , bacan-BA4577 , bacan-BA4983 , bacan-BA5009 , bacan-BA5110 , bacan-BA5136 , bacan-DHBF , bacan-q81tt2 , bacce-BC0192 , bacce-BC1788 , bacce-BC1954 , bacce-BC2141 , bacce-BC2171 , bacce-BC4730 , bacce-BC4862 , bacce-BC5130 , bacce-PHAC , bacce-q72yu1 , baccr-pepx

Title : The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium - Eisen_2002_Proc.Natl.Acad.Sci.U.S.A_99_9509
Author(s) : Eisen JA , Nelson KE , Paulsen IT , Heidelberg JF , Wu M , Dodson RJ , Deboy R , Gwinn ML , Nelson WC , Haft DH , Hickey EK , Peterson JD , Durkin AS , Kolonay JL , Yang F , Holt I , Umayam LA , Mason T , Brenner M , Shea TP , Parksey D , Nierman WC , Feldblyum TV , Hansen CL , Craven MB , Radune D , Vamathevan J , Khouri H , White O , Gruber TM , Ketchum KA , Venter JC , Tettelin H , Bryant DA , Fraser CM
Ref : Proceedings of the National Academy of Sciences of the United States of America , 99 :9509 , 2002
Abstract : Eisen_2002_Proc.Natl.Acad.Sci.U.S.A_99_9509
ESTHER : Eisen_2002_Proc.Natl.Acad.Sci.U.S.A_99_9509
PubMedSearch : Eisen_2002_Proc.Natl.Acad.Sci.U.S.A_99_9509
PubMedID: 12093901
Gene_locus related to this paper: chlte-CT0177 , chlte-CT0524 , chlte-CT0717 , chlte-CT0947 , chlte-CT1208 , chlte-CT1253 , chlte-CT1301 , chlte-CT1312 , chlte-CT1856 , chlte-CT1908 , chlte-CT2087 , chlte-CT2271 , chlte-MENH , chlte-MET2 , chlte-q4w546 , chlte-q8kgb8

Title : Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains - Fleischmann_2002_J.Bacteriol_184_5479
Author(s) : Fleischmann RD , Alland D , Eisen JA , Carpenter L , White O , Peterson J , Deboy R , Dodson R , Gwinn M , Haft D , Hickey E , Kolonay JF , Nelson WC , Umayam LA , Ermolaeva M , Salzberg SL , Delcher A , Utterback T , Weidman J , Khouri H , Gill J , Mikula A , Bishai W , Jacobs Jr WR, Jr. , Venter JC , Fraser CM
Ref : Journal of Bacteriology , 184 :5479 , 2002
Abstract : Fleischmann_2002_J.Bacteriol_184_5479
ESTHER : Fleischmann_2002_J.Bacteriol_184_5479
PubMedSearch : Fleischmann_2002_J.Bacteriol_184_5479
PubMedID: 12218036
Gene_locus related to this paper: myctu-a85a , myctu-a85b , myctu-a85c , myctu-bpoC , myctu-d5yk66 , myctu-ephA , myctu-ephB , myctu-ephc , myctu-ephd , myctu-ephE , myctu-ephF , myctu-hpx , myctu-linb , myctu-lipG , myctu-LPQP , myctu-MBTB , myctu-metx , myctu-mpt51 , myctu-MT3441 , myctu-p71654 , myctu-p95011 , myctu-PKS6 , myctu-PKS13 , myctu-ppe42 , myctu-ppe63 , myctu-Rv1430 , myctu-RV0045C , myctu-Rv0077c , myctu-Rv0151c , myctu-Rv0152c , myctu-Rv0159c , myctu-Rv0160c , myctu-rv0183 , myctu-Rv0217c , myctu-Rv0220 , myctu-Rv0272c , myctu-RV0293C , myctu-RV0421C , myctu-RV0457C , myctu-RV0519C , myctu-RV0774C , myctu-RV0782 , myctu-RV0840C , myctu-Rv1069c , myctu-Rv1076 , myctu-RV1123C , myctu-Rv1184c , myctu-Rv1190 , myctu-Rv1191 , myctu-RV1192 , myctu-RV1215C , myctu-Rv1399c , myctu-Rv1400c , myctu-RV1639C , myctu-RV1683 , myctu-RV1758 , myctu-Rv1800 , myctu-Rv1833c , myctu-Rv2045c , myctu-RV2054 , myctu-Rv2284 , myctu-RV2296 , myctu-Rv2385 , myctu-Rv2485c , myctu-RV2627C , myctu-RV2672 , myctu-RV2695 , myctu-RV2765 , myctu-RV2800 , myctu-RV2854 , myctu-Rv2970c , myctu-Rv3084 , myctu-Rv3097c , myctu-rv3177 , myctu-Rv3312c , myctu-RV3452 , myctu-Rv3487c , myctu-Rv3569c , myctu-Rv3591c , myctu-RV3724 , myctu-Rv3802c , myctu-Rv3822 , myctu-y0571 , myctu-y963 , myctu-Y1834 , myctu-y1835 , myctu-y2079 , myctu-Y2307 , myctu-yc88 , myctu-ym23 , myctu-ym24 , myctu-YR15 , myctu-yt28

Title : Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis - Heidelberg_2002_Nat.Biotechnol_20_1118
Author(s) : Heidelberg JF , Paulsen IT , Nelson KE , Gaidos EJ , Nelson WC , Read TD , Eisen JA , Seshadri R , Ward N , Methe B , Clayton RA , Meyer T , Tsapin A , Scott J , Beanan M , Brinkac L , Daugherty S , DeBoy RT , Dodson RJ , Durkin AS , Haft DH , Kolonay JF , Madupu R , Peterson JD , Umayam LA , White O , Wolf AM , Vamathevan J , Weidman J , Impraim M , Lee K , Berry K , Lee C , Mueller J , Khouri H , Gill J , Utterback TR , McDonald LA , Feldblyum TV , Smith HO , Venter JC , Nealson KH , Fraser CM
Ref : Nat Biotechnol , 20 :1118 , 2002
Abstract : Heidelberg_2002_Nat.Biotechnol_20_1118
ESTHER : Heidelberg_2002_Nat.Biotechnol_20_1118
PubMedSearch : Heidelberg_2002_Nat.Biotechnol_20_1118
PubMedID: 12368813
Gene_locus related to this paper: sheon-BIOH , sheon-LYPA , sheon-PIP , sheon-PTRB , sheon-q8ej95 , sheon-SO0071 , sheon-SO0614 , sheon-SO0616 , sheon-SO0801 , sheon-SO0880 , sheoe-SO0967 , sheon-SO1006 , sheon-SO1224 , sheon-SO1310 , sheon-SO1534 , sheon-SO1539 , sheon-SO1686 , sheon-SO1743 , sheon-SO1976 , sheon-SO1999 , sheon-SO2024 , sheon-SO2047 , sheon-SO2055 , sheon-SO2223 , sheon-SO2333 , sheon-SO2473 , sheon-SO2582 , sheon-SO2753 , sheon-SO2934 , sheon-SO3025 , sheon-SO3900 , sheon-SO3990 , sheon-SO4252 , sheon-SO4400 , sheon-SO4537 , sheon-SO4543 , sheon-SO4574 , sheon-SO4618 , sheon-SO4650 , sheon-SOA0048 , shefn-SfSFGH , sheon-ym51

Title : Unsuspected diversity among marine aerobic anoxygenic phototrophs. -
Author(s) : Beja O , Suzuki MT , Heidelberg JF , Nelson WC , Preston CM , Hamada T , Eisen JA , Fraser CM , DeLong EF
Ref : Nature , 415 :630 , 2002
PubMedID: 11832943
Gene_locus related to this paper: uncpr-65D09.54 , uncpr-65D09.60 , uncpr-Q8KZ44 , 9rhob-a0a076k2s0

Title : Complete genome sequence of Caulobacter crescentus - Nierman_2001_Proc.Natl.Acad.Sci.U.S.A_98_4136
Author(s) : Nierman WC , Feldblyum TV , Laub MT , Paulsen IT , Nelson KE , Eisen JA , Heidelberg JF , Alley MR , Ohta N , Maddock JR , Potocka I , Nelson WC , Newton A , Stephens C , Phadke ND , Ely B , DeBoy RT , Dodson RJ , Durkin AS , Gwinn ML , Haft DH , Kolonay JF , Smit J , Craven MB , Khouri H , Shetty J , Berry K , Utterback T , Tran K , Wolf A , Vamathevan J , Ermolaeva M , White O , Salzberg SL , Venter JC , Shapiro L , Fraser CM
Ref : Proc Natl Acad Sci U S A , 98 :4136 , 2001
Abstract : Nierman_2001_Proc.Natl.Acad.Sci.U.S.A_98_4136
ESTHER : Nierman_2001_Proc.Natl.Acad.Sci.U.S.A_98_4136
PubMedSearch : Nierman_2001_Proc.Natl.Acad.Sci.U.S.A_98_4136
PubMedID: 11259647
Gene_locus related to this paper: caucr-CC0087 , caucr-CC0223 , caucr-CC0341 , caucr-CC0352 , caucr-CC0355 , caucr-CC0384 , caucr-CC0477 , caucr-CC0478 , caucr-CC0525 , caucr-CC0552 , caucr-CC0771 , caucr-CC0799 , caucr-CC0847 , caucr-CC0936 , caucr-CC0940 , caucr-CC1048 , caucr-CC1053 , caucr-CC1175 , caucr-CC1226 , caucr-CC1227 , caucr-CC1229 , caucr-CC1499 , caucr-CC1622 , caucr-CC1734 , caucr-CC1867 , caucr-CC1986 , caucr-CC2083 , caucr-CC2154 , caucr-CC2185 , caucr-CC2230 , caucr-CC2253 , caucr-CC2298 , caucr-CC2313 , caucr-CC2358 , caucr-CC2395 , caucr-CC2411 , caucr-CC2515 , caucr-CC2565 , caucr-CC2671 , caucr-CC2710 , caucr-CC2763 , caucr-CC2797 , caucr-CC3039 , caucr-CC3091 , caucr-CC3099 , caucr-CC3204 , caucr-CC3246 , caucr-CC3300 , caucr-CC3308 , caucr-CC3346 , caucr-CC3418 , caucr-CC3441 , caucr-CC3442 , caucr-CC3634 , caucr-CC3687 , caucr-CC3688 , caucr-CC3723 , caucr-CC3725 , caucr-CC3758 , caucr-PHAZ , caucr-PHBC , caucr-q9a8c1 , caucr-q9aac8

Title : Complete genome sequence of a virulent isolate of Streptococcus pneumoniae - Tettelin_2001_Science_293_498
Author(s) : Tettelin H , Nelson KE , Paulsen IT , Eisen JA , Read TD , Peterson S , Heidelberg J , DeBoy RT , Haft DH , Dodson RJ , Durkin AS , Gwinn M , Kolonay JF , Nelson WC , Peterson JD , Umayam LA , White O , Salzberg SL , Lewis MR , Radune D , Holtzapple E , Khouri H , Wolf AM , Utterback TR , Hansen CL , McDonald LA , Feldblyum TV , Angiuoli S , Dickinson T , Hickey EK , Holt IE , Loftus BJ , Yang F , Smith HO , Venter JC , Dougherty BA , Morrison DA , Hollingshead SK , Fraser CM
Ref : Science , 293 :498 , 2001
Abstract : Tettelin_2001_Science_293_498
ESTHER : Tettelin_2001_Science_293_498
PubMedSearch : Tettelin_2001_Science_293_498
PubMedID: 11463916
Gene_locus related to this paper: strp2-q04l35 , strpj-b8zns7 , strpn-AXE1 , strpn-b2dz20 , strpn-pepx , strpn-SP0614 , strpn-SP0666 , strpn-SP0777 , strpn-SP0902 , strpn-SP1343

Title : Complete genome sequence of Neisseria meningitidis serogroup B strain MC58 - Tettelin_2000_Science_287_1809
Author(s) : Tettelin H , Saunders NJ , Heidelberg J , Jeffries AC , Nelson KE , Eisen JA , Ketchum KA , Hood DW , Peden JF , Dodson RJ , Nelson WC , Gwinn ML , Deboy R , Peterson JD , Hickey EK , Haft DH , Salzberg SL , White O , Fleischmann RD , Dougherty BA , Mason T , Ciecko A , Parksey DS , Blair E , Cittone H , Clark EB , Cotton MD , Utterback TR , Khouri H , Qin H , Vamathevan J , Gill J , Scarlato V , Masignani V , Pizza M , Grandi G , Sun L , Smith HO , Fraser CM , Moxon ER , Rappuoli R , Venter JC
Ref : Science , 287 :1809 , 2000
Abstract : Tettelin_2000_Science_287_1809
ESTHER : Tettelin_2000_Science_287_1809
PubMedSearch : Tettelin_2000_Science_287_1809
PubMedID: 10710307
Gene_locus related to this paper: neigo-pip , neima-metx , neimb-q9k0t9 , neime-ESD , neime-NMA2216 , neime-NMB0276 , neime-NMB0868 , neime-NMB1828 , neime-NMB1877

Title : Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima - Nelson_1999_Nature_399_323
Author(s) : Nelson KE , Clayton RA , Gill SR , Gwinn ML , Dodson RJ , Haft DH , Hickey EK , Peterson JD , Nelson WC , Ketchum KA , McDonald L , Utterback TR , Malek JA , Linher KD , Garrett MM , Stewart AM , Cotton MD , Pratt MS , Phillips CA , Richardson D , Heidelberg J , Sutton GG , Fleischmann RD , Eisen JA , White O , Salzberg SL , Smith HO , Venter JC , Fraser CM
Ref : Nature , 399 :323 , 1999
Abstract : Nelson_1999_Nature_399_323
ESTHER : Nelson_1999_Nature_399_323
PubMedSearch : Nelson_1999_Nature_399_323
PubMedID: 10360571
Gene_locus related to this paper: thema-ESTA , thema-q9x0d6 , thema-q9x042 , thema-TM0033 , thema-TM0053 , thema-TM0077 , thema-TM0336 , thema-TM1160 , thema-TM1350