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| Title : Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering - Hirose_2016_J.Biotechnol_218_51 |
| Author(s) : Hirose Y , Fujisawa T , Ohtsubo Y , Katayama M , Misawa N , Wakazuki S , Shimura Y , Nakamura Y , Kawachi M , Yoshikawa H , Eki T , Kanesaki Y |
| Ref : J Biotechnol , 218 :51 , 2016 |
| Abstract : Hirose_2016_J.Biotechnol_218_51 |
| ESTHER : Hirose_2016_J.Biotechnol_218_51 |
| PubMedSearch : Hirose_2016_J.Biotechnol_218_51 |
| PubMedID: 26656223 |
| Gene_locus related to this paper: 9noso-a0a0s3pjx6 |
| Title : Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools - Hirose_2016_J.Biotechnol_220_45 |
| Author(s) : Hirose Y , Fujisawa T , Ohtsubo Y , Katayama M , Misawa N , Wakazuki S , Shimura Y , Nakamura Y , Kawachi M , Yoshikawa H , Eki T , Kanesaki Y |
| Ref : J Biotechnol , 220 :45 , 2016 |
| Abstract : Hirose_2016_J.Biotechnol_220_45 |
| ESTHER : Hirose_2016_J.Biotechnol_220_45 |
| PubMedSearch : Hirose_2016_J.Biotechnol_220_45 |
| PubMedID: 26784989 |
| Gene_locus related to this paper: 9cyan-a0a0s3tkv2 |
| Title : Complete Genome Sequence of Algoriphagus sp. Strain M8-2, Isolated from a Brackish Lake - Muraguchi_2016_Genome.Announc_4_e00347 |
| Author(s) : Muraguchi Y , Kushimoto K , Ohtsubo Y , Suzuki T , Dohra H , Kimbara K , Shintani M |
| Ref : Genome Announc , 4 : , 2016 |
| Abstract : Muraguchi_2016_Genome.Announc_4_e00347 |
| ESTHER : Muraguchi_2016_Genome.Announc_4_e00347 |
| PubMedSearch : Muraguchi_2016_Genome.Announc_4_e00347 |
| PubMedID: 27174266 |
| Gene_locus related to this paper: 9bact-a0a142ekx2 |
| Title : Complete Genome Sequence of a Phenanthrene Degrader, Mycobacterium sp. Strain EPa45 (NBRC 110737), Isolated from a Phenanthrene-Degrading Consortium - Kato_2015_Genome.Announc_3_e00782 |
| Author(s) : Kato H , Ogawa N , Ohtsubo Y , Oshima K , Toyoda A , Mori H , Nagata Y , Kurokawa K , Hattori M , Fujiyama A , Tsuda M |
| Ref : Genome Announc , 3 : , 2015 |
| Abstract : Kato_2015_Genome.Announc_3_e00782 |
| ESTHER : Kato_2015_Genome.Announc_3_e00782 |
| PubMedSearch : Kato_2015_Genome.Announc_3_e00782 |
| PubMedID: 26184940 |
| Gene_locus related to this paper: 9myco-a0a0g3iim6 , 9myco-a0a0g3ijm3 , 9myco-a0a0g3ipv9 , 9myco-a0a0g3iuf8 , 9myco-a0a0g3ivy5 , 9myco-a0a0g3ihb1 |
| Title : Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507) - Ohtsubo_2015_Genome.Announc_3_e01169 |
| Author(s) : Ohtsubo Y , Nagata Y , Numata M , Tsuchikane K , Hosoyama A , Yamazoe A , Tsuda M , Fujita N , Kawai F |
| Ref : Genome Announc , 3 :e01169 , 2015 |
| Abstract : Ohtsubo_2015_Genome.Announc_3_e01169 |
| ESTHER : Ohtsubo_2015_Genome.Announc_3_e01169 |
| PubMedSearch : Ohtsubo_2015_Genome.Announc_3_e01169 |
| PubMedID: 26472829 |
| Gene_locus related to this paper: sphs1-a0a0m4cze0 |
| Title : Properties and biotechnological applications of natural and engineered haloalkane dehalogenases - Nagata_2015_Appl.Microbiol.Biotechnol_99_9865 |
| Author(s) : Nagata Y , Ohtsubo Y , Tsuda M |
| Ref : Applied Microbiology & Biotechnology , 99 :9865 , 2015 |
| Abstract : Nagata_2015_Appl.Microbiol.Biotechnol_99_9865 |
| ESTHER : Nagata_2015_Appl.Microbiol.Biotechnol_99_9865 |
| PubMedSearch : Nagata_2015_Appl.Microbiol.Biotechnol_99_9865 |
| PubMedID: 26373728 |
| Title : Bacterial clade with the ribosomal RNA operon on a small plasmid rather than the chromosome - Anda_2015_Proc.Natl.Acad.Sci.U.S.A_112_14343 |
| Author(s) : Anda M , Ohtsubo Y , Okubo T , Sugawara M , Nagata Y , Tsuda M , Minamisawa K , Mitsui H |
| Ref : Proc Natl Acad Sci U S A , 112 :14343 , 2015 |
| Abstract : Anda_2015_Proc.Natl.Acad.Sci.U.S.A_112_14343 |
| ESTHER : Anda_2015_Proc.Natl.Acad.Sci.U.S.A_112_14343 |
| PubMedSearch : Anda_2015_Proc.Natl.Acad.Sci.U.S.A_112_14343 |
| PubMedID: 26534993 |
| Gene_locus related to this paper: 9rhiz-a0a0s2en26 , 9rhiz-a0a0p0z830 , 9rhiz-a0a0p0z878 , 9rhiz-a0a0p0z9k0 , 9rhiz-a0a0s2epz8 |
| Title : Complete Genome Sequence of Polypropylene Glycol- and Polyethylene Glycol-Degrading Sphingopyxis macrogoltabida Strain EY-1 - Ohtsubo_2015_Genome.Announc_3_e01399 |
| Author(s) : Ohtsubo Y , Nagata Y , Numata M , Tsuchikane K , Hosoyama A , Yamazoe A , Tsuda M , Fujita N , Kawai F |
| Ref : Genome Announc , 3 : , 2015 |
| Abstract : Ohtsubo_2015_Genome.Announc_3_e01399 |
| ESTHER : Ohtsubo_2015_Genome.Announc_3_e01399 |
| PubMedSearch : Ohtsubo_2015_Genome.Announc_3_e01399 |
| PubMedID: 26634754 |
| Gene_locus related to this paper: sphmc-a0a0n9ujk2 |
| Title : Complete Genome Sequence of Pseudomonas sp. Strain TKP, Isolated from a gamma-Hexachlorocyclohexane-Degrading Mixed Culture - Ohtsubo_2014_Genome.Announc_2_e01241 |
| Author(s) : Ohtsubo Y , Kishida K , Sato T , Tabata M , Kawasumi T , Ogura Y , Hayashi T , Tsuda M , Nagata Y |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Ohtsubo_2014_Genome.Announc_2_e01241 |
| ESTHER : Ohtsubo_2014_Genome.Announc_2_e01241 |
| PubMedSearch : Ohtsubo_2014_Genome.Announc_2_e01241 |
| PubMedID: 24482516 |
| Gene_locus related to this paper: psefl-e2xn15 , psefs-c3k632 , psefs-laaa , psefs-c3k813 , psefl-e2xkc8 , 9psed-v9qxq1 , 9psed-v9qr47 |
| Title : Complete Genome Sequence of Pseudomonas aeruginosa MTB-1, Isolated from a Microbial Community Enriched by the Technical Formulation of Hexachlorocyclohexane - Ohtsubo_2014_Genome.Announc_2_e01130 |
| Author(s) : Ohtsubo Y , Sato T , Kishida K , Tabata M , Ogura Y , Hayashi T , Tsuda M , Nagata Y |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Ohtsubo_2014_Genome.Announc_2_e01130 |
| ESTHER : Ohtsubo_2014_Genome.Announc_2_e01130 |
| PubMedSearch : Ohtsubo_2014_Genome.Announc_2_e01130 |
| PubMedID: 24459257 |
| Gene_locus related to this paper: pseae-PA3695 , pseae-PA5080 , pseae-q9i252 |
| Title : Complete Genome Sequence of the Thermophilic Polychlorinated Biphenyl Degrader Geobacillus sp. Strain JF8 (NBRC 109937) - Shintani_2014_Genome.Announc_2_e01213 |
| Author(s) : Shintani M , Ohtsubo Y , Fukuda K , Hosoyama A , Ohji S , Yamazoe A , Fujita N , Nagata Y , Tsuda M , Hatta T , Kimbara K |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Shintani_2014_Genome.Announc_2_e01213 |
| ESTHER : Shintani_2014_Genome.Announc_2_e01213 |
| PubMedSearch : Shintani_2014_Genome.Announc_2_e01213 |
| PubMedID: 24459274 |
| Gene_locus related to this paper: geotn-a4isp0 , 9baci-s5yvc0 , 9baci-s5yzj8 |
| Title : Stepwise enhancement of catalytic performance of haloalkane dehalogenase LinB towards beta-hexachlorocyclohexane - Moriuchi_2014_AMB.Express_4_72 |
| Author(s) : Moriuchi R , Tanaka H , Nikawadori Y , Ishitsuka M , Ito M , Ohtsubo Y , Tsuda M , Damborsky J , Prokop Z , Nagata Y |
| Ref : AMB Express , 4 :72 , 2014 |
| Abstract : Moriuchi_2014_AMB.Express_4_72 |
| ESTHER : Moriuchi_2014_AMB.Express_4_72 |
| PubMedSearch : Moriuchi_2014_AMB.Express_4_72 |
| PubMedID: 25401073 |
| Title : Complete Genome Sequence of a Propionibacterium acnes Isolate from a Sarcoidosis Patient - Minegishi_2013_Genome.Announc_1_E00016 |
| Author(s) : Minegishi K , Aikawa C , Furukawa A , Watanabe T , Nakano T , Ogura Y , Ohtsubo Y , Kurokawa K , Hayashi T , Maruyama F , Nakagawa I , Eishi Y |
| Ref : Genome Announc , 1 : , 2013 |
| Abstract : Minegishi_2013_Genome.Announc_1_E00016 |
| ESTHER : Minegishi_2013_Genome.Announc_1_E00016 |
| PubMedSearch : Minegishi_2013_Genome.Announc_1_E00016 |
| PubMedID: 23405284 |
| Gene_locus related to this paper: proac-q6a5t3 , proac-q6a981 |
| Title : Complete Genome Sequence of the gamma-Hexachlorocyclohexane-Degrading Bacterium Sphingomonas sp. Strain MM-1 - Tabata_2013_Genome.Announc_1_e00247 |
| Author(s) : Tabata M , Ohtsubo Y , Ohhata S , Tsuda M , Nagata Y |
| Ref : Genome Announc , 1 : , 2013 |
| Abstract : Tabata_2013_Genome.Announc_1_e00247 |
| ESTHER : Tabata_2013_Genome.Announc_1_e00247 |
| PubMedSearch : Tabata_2013_Genome.Announc_1_e00247 |
| PubMedID: 23682148 |
| Gene_locus related to this paper: 9sphn-m4s0a2 , 9sphn-m4sjq0 , 9sphn-m4s4n0 , 9sphn-m4rwk9 , 9sphn-m4s1q7 |
| Title : Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader - Ohtsubo_2012_J.Bacteriol_194_6970 |
| Author(s) : Ohtsubo Y , Maruyama F , Mitsui H , Nagata Y , Tsuda M |
| Ref : Journal of Bacteriology , 194 :6970 , 2012 |
| Abstract : Ohtsubo_2012_J.Bacteriol_194_6970 |
| ESTHER : Ohtsubo_2012_J.Bacteriol_194_6970 |
| PubMedSearch : Ohtsubo_2012_J.Bacteriol_194_6970 |
| PubMedID: 23209225 |
| Gene_locus related to this paper: 9burk-k0hvd1 , 9burk-k0hw51 , 9burk-k0hxu4 , 9burk-k0i5a9 , 9burk-k0i8t8 , 9burk-k0i3l8 , 9burk-k0i392 |
| Title : The lin genes for gamma-hexachlorocyclohexane degradation in Sphingomonas sp. MM-1 proved to be dispersed across multiple plasmids - Tabata_2011_Biosci.Biotechnol.Biochem_75_466 |
| Author(s) : Tabata M , Endo R , Ito M , Ohtsubo Y , Kumar A , Tsuda M , Nagata Y |
| Ref : Biosci Biotechnol Biochem , 75 :466 , 2011 |
| Abstract : Tabata_2011_Biosci.Biotechnol.Biochem_75_466 |
| ESTHER : Tabata_2011_Biosci.Biotechnol.Biochem_75_466 |
| PubMedSearch : Tabata_2011_Biosci.Biotechnol.Biochem_75_466 |
| PubMedID: 21389627 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Complete genome sequence of the representative gamma-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26 - Nagata_2010_J.Bacteriol_192_5852 |
| Author(s) : Nagata Y , Ohtsubo Y , Endo R , Ichikawa N , Ankai A , Oguchi A , Fukui S , Fujita N , Tsuda M |
| Ref : Journal of Bacteriology , 192 :5852 , 2010 |
| Abstract : Nagata_2010_J.Bacteriol_192_5852 |
| ESTHER : Nagata_2010_J.Bacteriol_192_5852 |
| PubMedSearch : Nagata_2010_J.Bacteriol_192_5852 |
| PubMedID: 20817768 |
| Gene_locus related to this paper: psepa-q6vpf3 , sphju-d4z1p3 , sphju-d4z3u6 , sphpi-linb , sphju-d4yyy8 |
| Title : Novel organization of aromatic degradation pathway genes in a microbial community as revealed by metagenomic analysis - Suenaga_2009_ISME.J_3_1335 |
| Author(s) : Suenaga H , Koyama Y , Miyakoshi M , Miyazaki R , Yano H , Sota M , Ohtsubo Y , Tsuda M , Miyazaki K |
| Ref : Isme J , 3 :1335 , 2009 |
| Abstract : Suenaga_2009_ISME.J_3_1335 |
| ESTHER : Suenaga_2009_ISME.J_3_1335 |
| PubMedSearch : Suenaga_2009_ISME.J_3_1335 |
| PubMedID: 19587775 |
| Gene_locus related to this paper: 9bact-c6kti0 , 9bact-c6ktz1 , 9bact-c6ku06 , 9bact-c6ku85 , 9bact-c6kub4 , 9bact-c6kud7 , 9bact-c6kwi7 , 9bact-c6l0y5 , 9burk-q0gqt7 , psepu-TDNF |
| Title : Insertion sequence-based cassette PCR: cultivation-independent isolation of gamma-hexachlorocyclohexane-degrading genes from soil DNA - Fuchu_2008_Appl.Microbiol.Biotechnol_79_627 |
| Author(s) : Fuchu G , Ohtsubo Y , Ito M , Miyazaki R , Ono A , Nagata Y , Tsuda M |
| Ref : Applied Microbiology & Biotechnology , 79 :627 , 2008 |
| Abstract : Fuchu_2008_Appl.Microbiol.Biotechnol_79_627 |
| ESTHER : Fuchu_2008_Appl.Microbiol.Biotechnol_79_627 |
| PubMedSearch : Fuchu_2008_Appl.Microbiol.Biotechnol_79_627 |
| PubMedID: 18425509 |
| Gene_locus related to this paper: psepa-q6vpf3 , sphpi-linb |
| Title : Complete sequence determination combined with analysis of transposition\/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements - Yano_2007_J.Mol.Biol_369_11 |
| Author(s) : Yano H , Garruto CE , Sota M , Ohtsubo Y , Nagata Y , Zylstra GJ , Williams PA , Tsuda M |
| Ref : Journal of Molecular Biology , 369 :11 , 2007 |
| Abstract : Yano_2007_J.Mol.Biol_369_11 |
| ESTHER : Yano_2007_J.Mol.Biol_369_11 |
| PubMedSearch : Yano_2007_J.Mol.Biol_369_11 |
| PubMedID: 17408691 |
| Title : Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102 - Ohtsubo_2006_Mol.Microbiol_60_1563 |
| Author(s) : Ohtsubo Y , Goto H , Nagata Y , Kudo T , Tsuda M |
| Ref : Molecular Microbiology , 60 :1563 , 2006 |
| Abstract : Ohtsubo_2006_Mol.Microbiol_60_1563 |
| ESTHER : Ohtsubo_2006_Mol.Microbiol_60_1563 |
| PubMedSearch : Ohtsubo_2006_Mol.Microbiol_60_1563 |
| PubMedID: 16796688 |
| Title : Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation - Miyazaki_2006_Appl.Environ.Microbiol_72_6923 |
| Author(s) : Miyazaki R , Sato Y , Ito M , Ohtsubo Y , Nagata Y , Tsuda M |
| Ref : Applied Environmental Microbiology , 72 :6923 , 2006 |
| Abstract : Miyazaki_2006_Appl.Environ.Microbiol_72_6923 |
| ESTHER : Miyazaki_2006_Appl.Environ.Microbiol_72_6923 |
| PubMedSearch : Miyazaki_2006_Appl.Environ.Microbiol_72_6923 |
| PubMedID: 16963556 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities - Sato_2005_Appl.Environ.Microbiol_71_4372 |
| Author(s) : Sato Y , Monincova M , Chaloupkova R , Prokop Z , Ohtsubo Y , Minamisawa K , Tsuda M , Damborsky J , Nagata Y |
| Ref : Applied Environmental Microbiology , 71 :4372 , 2005 |
| Abstract : Sato_2005_Appl.Environ.Microbiol_71_4372 |
| ESTHER : Sato_2005_Appl.Environ.Microbiol_71_4372 |
| PubMedSearch : Sato_2005_Appl.Environ.Microbiol_71_4372 |
| PubMedID: 16085827 |
| Title : Identification and characterization of genes involved in the downstream degradation pathway of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis UT26 - Endo_2005_J.Bacteriol_187_847 |
| Author(s) : Endo R , Kamakura M , Miyauchi K , Fukuda M , Ohtsubo Y , Tsuda M , Nagata Y |
| Ref : Journal of Bacteriology , 187 :847 , 2005 |
| Abstract : Endo_2005_J.Bacteriol_187_847 |
| ESTHER : Endo_2005_J.Bacteriol_187_847 |
| PubMedSearch : Endo_2005_J.Bacteriol_187_847 |
| PubMedID: 15659662 |
| Gene_locus related to this paper: psepa-q6vqy9 |
| Title : Degradation of beta-Hexachlorocyclohexane by Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26 - Nagata_2005_Appl.Environ.Microbiol_71_2183 |
| Author(s) : Nagata Y , Prokop Z , Sato Y , Jerabek P , Kumar A , Ohtsubo Y , Tsuda M , Damborsky J |
| Ref : Applied Environmental Microbiology , 71 :2183 , 2005 |
| Abstract : Nagata_2005_Appl.Environ.Microbiol_71_2183 |
| ESTHER : Nagata_2005_Appl.Environ.Microbiol_71_2183 |
| PubMedSearch : Nagata_2005_Appl.Environ.Microbiol_71_2183 |
| PubMedID: 15812056 |
| Title : Expression of the bph genes involved in biphenyl\/PCB degradation in Pseudomonas sp. KKS102 induced by the biphenyl degradation intermediate, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid - Ohtsubo_2000_Gene_256_223 |
| Author(s) : Ohtsubo Y , Nagata Y , Kimbara K , Takagi M , Ohta A |
| Ref : Gene , 256 :223 , 2000 |
| Abstract : Ohtsubo_2000_Gene_256_223 |
| ESTHER : Ohtsubo_2000_Gene_256_223 |
| PubMedSearch : Ohtsubo_2000_Gene_256_223 |
| PubMedID: 11054551 |