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Author Report for: Omori T

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    Title: Genome sequence of the white koji mold Aspergillus kawachii IFO 4308, used for brewing the Japanese distilled spirit shochu
    Futagami T, Mori K, Yamashita A, Wada S, Kajiwara Y, Takashita H, Omori T, Takegawa K, Tashiro K and Goto M <1 more author(s)>
    Ref: Eukaryot Cell, 10:1586, 2011 : PubMed

            

    Title: Cloning and nucleotide sequences of carbazole degradation genes from marine bacterium Neptuniibacter sp. strain CAR-SF
    Nagashima H, Zulkharnain AB, Maeda R, Fuse H, Iwata K, Omori T
    Ref: Curr Microbiol, 61:50, 2010 : PubMed

            

    Title: Isolation and characterization of a car gene cluster from the naphthalene, phenanthrene, and carbazole-degrading marine isolate Lysobacter sp. strain OC7
    Maeda R, Nagashima H, Zulkharnain AB, Iwata K, Omori T
    Ref: Curr Microbiol, 59:154, 2009 : PubMed

            

    Title: The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole
    Shintani M, Urata M, Inoue K, Eto K, Habe H, Omori T, Yamane H, Nojiri H
    Ref: Journal of Bacteriology, 189:2007, 2007 : PubMed

            

    Title: Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01
    Jun SY, Fushinobu S, Nojiri H, Omori T, Shoun H, Wakagi T
    Ref: Biochimica & Biophysica Acta, 1764:1159, 2006 : PubMed

            

    Title: Plasmid pCAR3 contains multiple gene sets involved in the conversion of carbazole to anthranilate
    Urata M, Uchimura H, Noguchi H, Sakaguchi T, Takemura T, Eto K, Habe H, Omori T, Yamane H, Nojiri H
    Ref: Applied Environmental Microbiology, 72:3198, 2006 : PubMed

            

    Title: A series of crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with various cleavage products
    Fushinobu S, Jun SY, Hidaka M, Nojiri H, Yamane H, Shoun H, Omori T, Wakagi T
    Ref: Biosci Biotechnol Biochem, 69:491, 2005 : PubMed

            

    Title: The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria
    Habe H, Chung JS, Ishida A, Kasuga K, Ide K, Takemura T, Nojiri H, Yamane H, Omori T
    Ref: Microbiology, 151:3713, 2005 : PubMed

            

    Title: Diversity of carbazole-degrading bacteria having the car gene cluster: isolation of a novel gram-positive carbazole-degrading bacterium
    Inoue K, Habe H, Yamane H, Omori T, Nojiri H
    Ref: FEMS Microbiology Letters, 245:145, 2005 : PubMed

            

    Title: Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains
    Shintani M, Habe H, Tsuda M, Omori T, Yamane H, Nojiri H
    Ref: Biotechnol Lett, 27:1847, 2005 : PubMed

            

    Title: Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteria
    Shintani M, Yoshida T, Habe H, Omori T, Nojiri H
    Ref: Applied Microbiology & Biotechnology, 67:370, 2005 : PubMed

            

    Title: Characterization of [3Fe-4S] ferredoxin DbfA3, which functions in the angular dioxygenase system of Terrabacter sp. strain DBF63
    Takagi T, Habe H, Yoshida T, Yamane H, Omori T, Nojiri H
    Ref: Applied Microbiology & Biotechnology, 68:336, 2005 : PubMed

            

    Title: Secretion of bacterial xenobiotic-degrading enzymes from transgenic plants by an apoplastic expressional system: an applicability for phytoremediation
    Uchida E, Ouchi T, Suzuki Y, Yoshida T, Habe H, Yamaguchi I, Omori T, Nojiri H
    Ref: Environ Sci Technol, 39:7671, 2005 : PubMed

            

    Title: Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63
    Habe H, Chung JS, Kato H, Ayabe Y, Kasuga K, Yoshida T, Nojiri H, Yamane H, Omori T
    Ref: Journal of Bacteriology, 186:5938, 2004 : PubMed

            

    Title: Divergent structures of carbazole degradative car operons isolated from gram-negative bacteria
    Inoue K, Widada J, Nakai S, Endoh T, Urata M, Ashikawa Y, Shintani M, Saiki Y, Yoshida T and Nojiri H <2 more author(s)>
    Ref: Biosci Biotechnol Biochem, 68:1467, 2004 : PubMed

            

    Title: Genetic characterization of the dibenzofuran-degrading Actinobacteria carrying the dbfA1A2 gene homologues isolated from activated sludge
    Noumura T, Habe H, Widada J, Chung JS, Yoshida T, Nojiri H, Omori T
    Ref: FEMS Microbiology Letters, 239:147, 2004 : PubMed

            

    Title: Crystal structure of a histidine-tagged serine hydrolase involved in the carbazole degradation (CarC enzyme)
    Habe H, Morii K, Fushinobu S, Nam JW, Ayabe Y, Yoshida T, Wakagi T, Yamane H, Nojiri H, Omori T
    Ref: Biochemical & Biophysical Research Communications, 303:631, 2003 : PubMed

            

    Title: Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63
    Habe H, Miyakoshi M, Chung J, Kasuga K, Yoshida T, Nojiri H, Omori T
    Ref: Applied Microbiology & Biotechnology, 61:44, 2003 : PubMed

            

    Title: Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676
    Maeda K, Nojiri H, Shintani M, Yoshida T, Habe H, Omori T
    Ref: Journal of Molecular Biology, 326:21, 2003 : PubMed

            

    Title: Purification and characterization of meta-cleavage compound hydrolase from a carbazole degrader Pseudomonas resinovorans strain CA10
    Nojiri H, Taira H, Iwata K, Morii K, Nam JW, Yoshida T, Habe H, Nakamura S, Shimizu K and Omori T <1 more author(s)>
    Ref: Biosci Biotechnol Biochem, 67:36, 2003 : PubMed

            

    Title: Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2
    Pinyakong O, Habe H, Yoshida T, Nojiri H, Omori T
    Ref: Biochemical & Biophysical Research Communications, 301:350, 2003 : PubMed

            

    Title: Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products
    Fushinobu S, Saku T, Hidaka M, Jun SY, Nojiri H, Yamane H, Shoun H, Omori T, Wakagi T
    Ref: Protein Science, 11:2184, 2002 : PubMed

            

    Title: Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo-p-dioxins in soil
    Habe H, Ashikawa Y, Saiki Y, Yoshida T, Nojiri H, Omori T
    Ref: FEMS Microbiology Letters, 211:43, 2002 : PubMed

            

    Title: Organization and transcriptional characterization of catechol degradation genes involved in carbazole degradation by Pseudomonas resinovorans strain CA10
    Nojiri H, Maeda K, Sekiguchi H, Urata M, Shintani M, Yoshida T, Habe H, Omori T
    Ref: Biosci Biotechnol Biochem, 66:897, 2002 : PubMed

            

    Title: Enhanced degradation of carbazole and 2,3-dichlorodibenzo-p-dioxin in soils by Pseudomonas resinovorans strain CA10
    Widada J, Nojiri H, Yoshida T, Habe H, Omori T
    Ref: Chemosphere, 49:485, 2002 : PubMed

            

    Title: Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63
    Kasuga K, Habe H, Chung JS, Yoshida T, Nojiri H, Yamane H, Omori T
    Ref: Biochemical & Biophysical Research Communications, 283:195, 2001 : PubMed

            

    Title: Bacterial degradation of aromatic compounds via angular dioxygenation
    Nojiri H, Habe H, Omori T
    Ref: J Gen Appl Microbiol, 47:279, 2001 : PubMed

            

    Title: Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10
    Nojiri H, Sekiguchi H, Maeda K, Urata M, Nakai S, Yoshida T, Habe H, Omori T
    Ref: Journal of Bacteriology, 183:3663, 2001 : PubMed

            

    Title: Cloning and nucleotide sequence of carbazole catabolic genes from Pseudomonas stutzeri strain OM1, isolated from activated sludge
    Ouchiyama N, Miyachi S, Omori T
    Ref: J Gen Appl Microbiol, 44:57, 1998 : PubMed

            

    Title: Cloning and characterization of genes involved in the degradation of dibenzofuran by Terrabacter sp. strain DBF63.
    Kasuga K, Nojiri H, Yamane H, Kodama T, Omori T
    Ref: J Ferment Bioeng, 84:387, 1997 : PubMed

            

    Title: Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase
    Sato SI, Ouchiyama N, Kimura T, Nojiri H, Yamane H, Omori T
    Ref: Journal of Bacteriology, 179:4841, 1997 : PubMed

            

    Title: Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10
    Sato SI, Nam JW, Kasuga K, Nojiri H, Yamane H, Omori T
    Ref: Journal of Bacteriology, 179:4850, 1997 : PubMed

            

    Title: Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01
    Habe H, Kasuga K, Nojiri H, Yamane H, Omori T
    Ref: Applied Environmental Microbiology, 62:4471, 1996 : PubMed

            


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