Report for Oshima K

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References (48)

Title : Cholesteryl Ester Storage Disease: An underdiagnosed cause of cirrhosis in adults - Pant_2017_Ann.Diagn.Pathol_31_66
Author(s) : Pant M , Oshima K
Ref : Ann Diagn Pathol , 31 :66 , 2017
Abstract : Pant_2017_Ann.Diagn.Pathol_31_66
ESTHER : Pant_2017_Ann.Diagn.Pathol_31_66
PubMedSearch : Pant_2017_Ann.Diagn.Pathol_31_66
PubMedID: 28318950
Gene_locus related to this paper: human-LIPA

Title : Draft Genome Sequence of Streptomyces incarnatus NRRL8089, which Produces the Nucleoside Antibiotic Sinefungin - Oshima_2015_Genome.Announc_3_e00715
Author(s) : Oshima K , Hattori M , Shimizu H , Fukuda K , Nemoto M , Inagaki K , Tamura T
Ref : Genome Announc , 3 : , 2015
Abstract : Oshima_2015_Genome.Announc_3_e00715
ESTHER : Oshima_2015_Genome.Announc_3_e00715
PubMedSearch : Oshima_2015_Genome.Announc_3_e00715
PubMedID: 26159526
Gene_locus related to this paper: 9actn-a0a0g3ac56 , 9actn-a0a0g3anc9 , 9actn-a0a0g3awn7 , 9actn-a0a0g3avt9

Title : Complete Genome Sequence of a Phenanthrene Degrader, Mycobacterium sp. Strain EPa45 (NBRC 110737), Isolated from a Phenanthrene-Degrading Consortium - Kato_2015_Genome.Announc_3_e00782
Author(s) : Kato H , Ogawa N , Ohtsubo Y , Oshima K , Toyoda A , Mori H , Nagata Y , Kurokawa K , Hattori M , Fujiyama A , Tsuda M
Ref : Genome Announc , 3 : , 2015
Abstract : Kato_2015_Genome.Announc_3_e00782
ESTHER : Kato_2015_Genome.Announc_3_e00782
PubMedSearch : Kato_2015_Genome.Announc_3_e00782
PubMedID: 26184940
Gene_locus related to this paper: 9myco-a0a0g3iim6 , 9myco-a0a0g3ijm3 , 9myco-a0a0g3ipv9 , 9myco-a0a0g3iuf8 , 9myco-a0a0g3ivy5 , 9myco-a0a0g3ihb1

Title : Genome analysis of a novel Bradyrhizobium sp. DOA9 carrying a symbiotic plasmid - Okazaki_2015_PLoS.One_10_e0117392
Author(s) : Okazaki S , Noisangiam R , Okubo T , Kaneko T , Oshima K , Hattori M , Teamtisong K , Songwattana P , Tittabutr P , Boonkerd N , Saeki K , Sato S , Uchiumi T , Minamisawa K , Teaumroong N
Ref : PLoS ONE , 10 :e0117392 , 2015
Abstract : Okazaki_2015_PLoS.One_10_e0117392
ESTHER : Okazaki_2015_PLoS.One_10_e0117392
PubMedSearch : Okazaki_2015_PLoS.One_10_e0117392
PubMedID: 25710540
Gene_locus related to this paper: 9brad-a0a0r3chf0 , 9brad-a0a0s6v2v2

Title : Distribution and evolution of nitrogen fixation genes in the phylum Bacteroidetes - Inoue_2015_Microbes.Environ_30_44
Author(s) : Inoue J , Oshima K , Suda W , Sakamoto M , Iino T , Noda S , Hongoh Y , Hattori M , Ohkuma M
Ref : Microbes Environ , 30 :44 , 2015
Abstract : Inoue_2015_Microbes.Environ_30_44
ESTHER : Inoue_2015_Microbes.Environ_30_44
PubMedSearch : Inoue_2015_Microbes.Environ_30_44
PubMedID: 25736980
Gene_locus related to this paper: 9bact-a0a0e9lvi0 , 9bact-a0a0e9lzx7 , 9bace-a0a069d1v9 , 9bact-a0a0e9lyc6 , 9bace-a0a069d662

Title : Draft Genome Sequence of the Alkaliphilic and Xylanolytic Paenibacillus sp. Strain JCM 10914, Isolated from the Gut of a Soil-Feeding Termite - Ohkuma_2014_Genome.Announc_2_e01144
Author(s) : Ohkuma M , Yuki M , Oshima K , Suda W , Oshida Y , Kitamura K , Iida T , Hattori M
Ref : Genome Announc , 2 :e01144 , 2014
Abstract : Ohkuma_2014_Genome.Announc_2_e01144
ESTHER : Ohkuma_2014_Genome.Announc_2_e01144
PubMedSearch : Ohkuma_2014_Genome.Announc_2_e01144
PubMedID: 24459258
Gene_locus related to this paper: 9bacl-v9gd19 , 9bacl-v9g8w0

Title : Draft Genome Sequences of Three Strains of Bacteroides pyogenes Isolated from a Cat and Swine - Sakamoto_2014_Genome.Announc_2_e01242
Author(s) : Sakamoto M , Oshima K , Suda W , Kitamura K , Iida T , Hattori M , Ohkuma M
Ref : Genome Announc , 2 : , 2014
Abstract : Sakamoto_2014_Genome.Announc_2_e01242
ESTHER : Sakamoto_2014_Genome.Announc_2_e01242
PubMedSearch : Sakamoto_2014_Genome.Announc_2_e01242
PubMedID: 24482517
Gene_locus related to this paper: 9bace-w4pec1 , 9bace-w4paz4

Title : Draft Genome Sequences of Psychrobacter Strains JCM 18900, JCM 18901, JCM 18902, and JCM 18903, Isolated Preferentially from Frozen Aquatic Organisms - Kudo_2014_Genome.Announc_2_e00280
Author(s) : Kudo T , Kidera A , Kida M , Kawauchi A , Shimizu R , Nakahara T , Zhang X , Yamada A , Amano M , Hamada Y , Taniyama S , Arakawa O , Yoshida A , Oshima K , Suda W , Kuwahara H , Nogi Y , Kitamura K , Yuki M , Iida T , Moriya S , Inoue T , Hongoh Y , Hattori M , Ohkuma M
Ref : Genome Announc , 2 :e00280 , 2014
Abstract : Kudo_2014_Genome.Announc_2_e00280
ESTHER : Kudo_2014_Genome.Announc_2_e00280
PubMedSearch : Kudo_2014_Genome.Announc_2_e00280
PubMedID: 24699965
Gene_locus related to this paper: 9gamm-x0q9t6 , 9gamm-x0r0h9 , 9gamm-x0rb73 , 9gamm-x0qpg3 , 9gamm-x0rx94 , 9gamm-x0rpe0

Title : Draft Genome Sequence of Bacteroides reticulotermitis Strain JCM 10512T, Isolated from the Gut of a Termite - Yuki_2014_Genome.Announc_2_e00072
Author(s) : Yuki M , Oshima K , Suda W , Sakamoto M , Iida T , Hattori M , Ohkuma M
Ref : Genome Announc , 2 : , 2014
Abstract : Yuki_2014_Genome.Announc_2_e00072
ESTHER : Yuki_2014_Genome.Announc_2_e00072
PubMedSearch : Yuki_2014_Genome.Announc_2_e00072
PubMedID: 24526645
Gene_locus related to this paper: 9bace-w4uxt1 , 9bace-w4uy17 , 9bace-w4uuy7

Title : Draft Genome Sequences of Marine Flavobacterium Algibacter lectus Strains SS8 and NR4 - Takatani_2014_Genome.Announc_2_e01168
Author(s) : Takatani N , Nakanishi M , Meirelles P , Mino S , Suda W , Oshima K , Hattori M , Ohkuma M , Hosokawa M , Miyashita K , Thompson FL , Niwa A , Sawabe T
Ref : Genome Announc , 2 : , 2014
Abstract : Takatani_2014_Genome.Announc_2_e01168
ESTHER : Takatani_2014_Genome.Announc_2_e01168
PubMedSearch : Takatani_2014_Genome.Announc_2_e01168
PubMedID: 25395640
Gene_locus related to this paper: 9flao-a0a090w6b8 , 9flao-a0a090wm61

Title : Draft Genome Sequences of Marinobacter similis A3d10T and Marinobacter salarius R9SW1T - Ivanova_2014_Genome.Announc_2_e00442
Author(s) : Ivanova EP , Ng HJ , Webb HK , Feng G , Oshima K , Hattori M , Ohkuma M , Sergeev AF , Mikhailov VV , Crawford RJ , Sawabe T
Ref : Genome Announc , 2 : , 2014
Abstract : Ivanova_2014_Genome.Announc_2_e00442
ESTHER : Ivanova_2014_Genome.Announc_2_e00442
PubMedSearch : Ivanova_2014_Genome.Announc_2_e00442
PubMedID: 24855296
Gene_locus related to this paper: 9alte-a6f367

Title : Draft Genome Sequences of Three Alkaliphilic Bacillus Strains, Bacillus wakoensis JCM 9140T, Bacillus akibai JCM 9157T, and Bacillus hemicellulosilyticus JCM 9152T - Yuki_2014_Genome.Announc_2_e01258
Author(s) : Yuki M , Oshima K , Suda W , Oshida Y , Kitamura K , Iida T , Hattori M , Ohkuma M
Ref : Genome Announc , 2 : , 2014
Abstract : Yuki_2014_Genome.Announc_2_e01258
ESTHER : Yuki_2014_Genome.Announc_2_e01258
PubMedSearch : Yuki_2014_Genome.Announc_2_e01258
PubMedID: 24482522
Gene_locus related to this paper: 9baci-w4q973 , baca3-w4qlz5 , 9baci-w4qj07 , 9baci-w4q8b8 , baca3-w4qp70 , 9baci-w4qcm9 , baca3-w4qrq6

Title : Draft Genome Sequence of the Boron-Tolerant and Moderately Halotolerant Bacterium Gracilibacillus boraciitolerans JCM 21714T - Ahmed_2014_Genome.Announc_2_e00097
Author(s) : Ahmed I , Oshima K , Suda W , Kitamura K , Iida T , Ohmori Y , Fujiwara T , Hattori M , Ohkuma M
Ref : Genome Announc , 2 : , 2014
Abstract : Ahmed_2014_Genome.Announc_2_e00097
ESTHER : Ahmed_2014_Genome.Announc_2_e00097
PubMedSearch : Ahmed_2014_Genome.Announc_2_e00097
PubMedID: 24558242
Gene_locus related to this paper: 9baci-w4vi05 , 9baci-w4vjh3 , 9baci-w4vgr7

Title : Draft Genome Sequences of Cyclodextrin-Producing Alkaliphilic Bacillus Strains JCM 19045, JCM 19046, and JCM 19047 - Kudo_2014_Genome.Announc_2_e00211
Author(s) : Kudo T , Sakamoto K , Akinaga M , Kawauchi A , Nakahara T , Zhang X , Yamada A , Oshima K , Suda W , Kuwahara H , Nakamura N , Nogi Y , Kitamura K , Yuki M , Iida T , Moriya S , Inoue T , Hongoh Y , Hattori M , Ohkuma M
Ref : Genome Announc , 2 : , 2014
Abstract : Kudo_2014_Genome.Announc_2_e00211
ESTHER : Kudo_2014_Genome.Announc_2_e00211
PubMedSearch : Kudo_2014_Genome.Announc_2_e00211
PubMedID: 24652985
Gene_locus related to this paper: 9baci-a0a060lzd7 , 9baci-w7yjr4 , 9baci-w7zpe5 , 9baci-w8a608 , 9baci-w7zad0

Title : Draft Genome Sequences of Geomicrobium sp. Strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, Isolated from Aquatic Samples - Kudo_2014_Genome.Announc_2_e00622
Author(s) : Kudo T , Nakahara T , Zhang X , Taniyama S , Arakawa O , Murase S , Nakata H , Oshima K , Suda W , Kitamura K , Iida T , Oshida Y , Inoue T , Hongoh Y , Hattori M , Ohkuma M
Ref : Genome Announc , 2 : , 2014
Abstract : Kudo_2014_Genome.Announc_2_e00622
ESTHER : Kudo_2014_Genome.Announc_2_e00622
PubMedSearch : Kudo_2014_Genome.Announc_2_e00622
PubMedID: 24948772
Gene_locus related to this paper: 9bacl-a0a061nv39 , 9bacl-a0a061nsm4 , 9bacl-a0a061ndf6 , 9bacl-a0a061nlu5 , 9bacl-a0a061ntb4 , 9bacl-a0a061nnc9 , 9bacl-a0a061pf66

Title : Draft Genome Sequences of Two Lactobacillus Strains, L. farraginis JCM 14108T and L. composti JCM 14202T, Isolated from Compost of Distilled Shochu Residue - Yuki_2014_Genome.Announc_2_e00257
Author(s) : Yuki M , Oshima K , Suda W , Kitahara M , Kitamura K , Iida T , Hattori M , Ohkuma M
Ref : Genome Announc , 2 : , 2014
Abstract : Yuki_2014_Genome.Announc_2_e00257
ESTHER : Yuki_2014_Genome.Announc_2_e00257
PubMedSearch : Yuki_2014_Genome.Announc_2_e00257
PubMedID: 24675866
Gene_locus related to this paper: 9laco-x0pb49 , 9laco-x0psi7

Title : Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from a Cellulose-Degrading Bacterial Community - Yuki_2014_Genome.Announc_2_e00110
Author(s) : Yuki M , Oshima K , Suda W , Sakamoto M , Kitamura K , Iida T , Hattori M , Ohkuma M
Ref : Genome Announc , 2 : , 2014
Abstract : Yuki_2014_Genome.Announc_2_e00110
ESTHER : Yuki_2014_Genome.Announc_2_e00110
PubMedSearch : Yuki_2014_Genome.Announc_2_e00110
PubMedID: 24558248
Gene_locus related to this paper: 9firm-w4vb95 , 9firm-w4v5w9

Title : Genome evolution and plasticity of Serratia marcescens, an important multidrug-resistant nosocomial pathogen - Iguchi_2014_Genome.Biol.Evol_6_2096
Author(s) : Iguchi A , Nagaya Y , Pradel E , Ooka T , Ogura Y , Katsura K , Kurokawa K , Oshima K , Hattori M , Parkhill J , Sebaihia M , Coulthurst SJ , Gotoh N , Thomson NR , Ewbank JJ , Hayashi T
Ref : Genome Biol Evol , 6 :2096 , 2014
Abstract : Iguchi_2014_Genome.Biol.Evol_6_2096
ESTHER : Iguchi_2014_Genome.Biol.Evol_6_2096
PubMedSearch : Iguchi_2014_Genome.Biol.Evol_6_2096
PubMedID: 25070509
Gene_locus related to this paper: serma-a0a031rry9 , serma-a0a0a5sc46

Title : Draft Genome Sequences of Vibrio sp. Strains Isolated from Tetrodotoxin-Bearing Scavenging Gastropod - Kudo_2014_Genome.Announc_2_e00623
Author(s) : Kudo T , Kawauchi A , Nakahara T , Zhang X , Taniyama S , Takatani T , Arakawa O , Oshima K , Suda W , Kitamura K , Iida T , Iino T , Inoue T , Hongoh Y , Hattori M , Ohkuma M
Ref : Genome Announc , 2 : , 2014
Abstract : Kudo_2014_Genome.Announc_2_e00623
ESTHER : Kudo_2014_Genome.Announc_2_e00623
PubMedSearch : Kudo_2014_Genome.Announc_2_e00623
PubMedID: 24948773

Title : Genomic analysis by deep sequencing of the probiotic Lactobacillus brevis KB290 harboring nine plasmids reveals genomic stability - Fukao_2013_PLoS.One_8_e60521
Author(s) : Fukao M , Oshima K , Morita H , Toh H , Suda W , Kim SW , Suzuki S , Yakabe T , Hattori M , Yajima N
Ref : PLoS ONE , 8 :e60521 , 2013
Abstract : Fukao_2013_PLoS.One_8_e60521
ESTHER : Fukao_2013_PLoS.One_8_e60521
PubMedSearch : Fukao_2013_PLoS.One_8_e60521
PubMedID: 23544154
Gene_locus related to this paper: lacba-q03sl1

Title : Genome analysis suggests that the soil oligotrophic bacterium Agromonas oligotrophica (Bradyrhizobium oligotrophicum) is a nitrogen-fixing symbiont of Aeschynomene indica - Okubo_2013_Appl.Environ.Microbiol_79_2542
Author(s) : Okubo T , Fukushima S , Itakura M , Oshima K , Longtonglang A , Teaumroong N , Mitsui H , Hattori M , Hattori R , Hattori T , Minamisawa K
Ref : Applied Environmental Microbiology , 79 :2542 , 2013
Abstract : Okubo_2013_Appl.Environ.Microbiol_79_2542
ESTHER : Okubo_2013_Appl.Environ.Microbiol_79_2542
PubMedSearch : Okubo_2013_Appl.Environ.Microbiol_79_2542
PubMedID: 23396330
Gene_locus related to this paper: 9brad-m4zgf0 , 9brad-m4z0c0 , 9brad-m4za51 , 9brad-m4zdq9 , 9brad-m4zbd2

Title : Genomic adaptation of the Lactobacillus casei group - Toh_2013_PLoS.One_8_e75073
Author(s) : Toh H , Oshima K , Nakano A , Takahata M , Murakami M , Takaki T , Nishiyama H , Igimi S , Hattori M , Morita H
Ref : PLoS ONE , 8 :e75073 , 2013
Abstract : Toh_2013_PLoS.One_8_e75073
ESTHER : Toh_2013_PLoS.One_8_e75073
PubMedSearch : Toh_2013_PLoS.One_8_e75073
PubMedID: 24116025
Gene_locus related to this paper: lacc3-q03b36 , laccb-b3wcx2 , lacrh-pepr , lacca-b5qt93 , lacca-k0n1x0 , lacpa-s2ter8 , lacpa-s2rz88

Title : Complete Genome Sequence of Burkholderia sp. Strain RPE64, Bacterial Symbiont of the Bean Bug Riptortus pedestris - Shibata_2013_Genome.Announc_1_e00441
Author(s) : Shibata TF , Maeda T , Nikoh N , Yamaguchi K , Oshima K , Hattori M , Nishiyama T , Hasebe M , Fukatsu T , Kikuchi Y , Shigenobu S
Ref : Genome Announc , 1 :e00441 , 2013
Abstract : Shibata_2013_Genome.Announc_1_e00441
ESTHER : Shibata_2013_Genome.Announc_1_e00441
PubMedSearch : Shibata_2013_Genome.Announc_1_e00441
PubMedID: 23833137
Gene_locus related to this paper: 9burk-r4wy41 , 9burk-a0a069nn99 , 9burk-r4wtx8 , 9burk-r4wsg0 , 9burk-r4x084 , 9burk-r4wsp2

Title : Chromosome painting in silico in a bacterial species reveals fine population structure - Yahara_2013_Mol.Biol.Evol_30_1454
Author(s) : Yahara K , Furuta Y , Oshima K , Yoshida M , Azuma T , Hattori M , Uchiyama I , Kobayashi I
Ref : Molecular Biology Evolution , 30 :1454 , 2013
Abstract : Yahara_2013_Mol.Biol.Evol_30_1454
ESTHER : Yahara_2013_Mol.Biol.Evol_30_1454
PubMedSearch : Yahara_2013_Mol.Biol.Evol_30_1454
PubMedID: 23505045

Title : Complete genome sequence of Bradyrhizobium sp. S23321: insights into symbiosis evolution in soil oligotrophs - Okubo_2012_Microbes.Environ_27_306
Author(s) : Okubo T , Tsukui T , Maita H , Okamoto S , Oshima K , Fujisawa T , Saito A , Futamata H , Hattori R , Shimomura Y , Haruta S , Morimoto S , Wang Y , Sakai Y , Hattori M , Aizawa S , Nagashima KV , Masuda S , Hattori T , Yamashita A , Bao Z , Hayatsu M , Kajiya-Kanegae H , Yoshinaga I , Sakamoto K , Toyota K , Nakao M , Kohara M , Anda M , Niwa R , Jung-Hwan P , Sameshima-Saito R , Tokuda S , Yamamoto S , Yokoyama T , Akutsu T , Nakamura Y , Nakahira-Yanaka Y , Takada Hoshino Y , Hirakawa H , Mitsui H , Terasawa K , Itakura M , Sato S , Ikeda-Ohtsubo W , Sakakura N , Kaminuma E , Minamisawa K
Ref : Microbes Environ , 27 :306 , 2012
Abstract : Okubo_2012_Microbes.Environ_27_306
ESTHER : Okubo_2012_Microbes.Environ_27_306
PubMedSearch : Okubo_2012_Microbes.Environ_27_306
PubMedID: 22452844
Gene_locus related to this paper: 9brad-i0g2u8 , 9brad-i0gf89 , braja-pcaD , 9brad-i0fzh8 , 9brad-i0gfv2 , 9brad-i0g2y4

Title : Complete genome sequence of Bacillus cereus NC7401, which produces high levels of the emetic toxin cereulide - Takeno_2012_J.Bacteriol_194_4767
Author(s) : Takeno A , Okamoto A , Tori K , Oshima K , Hirakawa H , Toh H , Agata N , Yamada K , Ogasawara N , Hayashi T , Shimizu T , Kuhara S , Hattori M , Ohta M
Ref : Journal of Bacteriology , 194 :4767 , 2012
Abstract : Takeno_2012_J.Bacteriol_194_4767
ESTHER : Takeno_2012_J.Bacteriol_194_4767
PubMedSearch : Takeno_2012_J.Bacteriol_194_4767
PubMedID: 22887669
Gene_locus related to this paper: bacce-c2zyv1

Title : Complete genome sequence of Lactococcus lactis IO-1, a lactic acid bacterium that utilizes xylose and produces high levels of L-lactic acid - Kato_2012_J.Bacteriol_194_2102
Author(s) : Kato H , Shiwa Y , Oshima K , Machii M , Araya-Kojima T , Zendo T , Shimizu-Kadota M , Hattori M , Sonomoto K , Yoshikawa H
Ref : Journal of Bacteriology , 194 :2102 , 2012
Abstract : Kato_2012_J.Bacteriol_194_2102
ESTHER : Kato_2012_J.Bacteriol_194_2102
PubMedSearch : Kato_2012_J.Bacteriol_194_2102
PubMedID: 22461545
Gene_locus related to this paper: lacla-menX

Title : Complete genomic sequence of the equol-producing bacterium Eggerthella sp. strain YY7918, isolated from adult human intestine - Yokoyama_2011_J.Bacteriol_193_5570
Author(s) : Yokoyama S , Oshima K , Nomura I , Hattori M , Suzuki T
Ref : Journal of Bacteriology , 193 :5570 , 2011
Abstract : Yokoyama_2011_J.Bacteriol_193_5570
ESTHER : Yokoyama_2011_J.Bacteriol_193_5570
PubMedSearch : Yokoyama_2011_J.Bacteriol_193_5570
PubMedID: 21914883
Gene_locus related to this paper: eegsy-f7uz47

Title : Complete genome sequences of Arcobacter butzleri ED-1 and Arcobacter sp. strain L, both isolated from a microbial fuel cell - Toh_2011_J.Bacteriol_193_6411
Author(s) : Toh H , Sharma VK , Oshima K , Kondo S , Hattori M , Ward FB , Free A , Taylor TD
Ref : Journal of Bacteriology , 193 :6411 , 2011
Abstract : Toh_2011_J.Bacteriol_193_6411
ESTHER : Toh_2011_J.Bacteriol_193_6411
PubMedSearch : Toh_2011_J.Bacteriol_193_6411
PubMedID: 22038970
Gene_locus related to this paper: 9prot-e6l4v2 , 9prot-g2hv40 , 9prot-a0a0g9kwp1 , 9prot-g2hwt3

Title : Complete genomic sequence of the O-desmethylangolensin-producing bacterium Clostridium rRNA cluster XIVa strain SY8519, isolated from adult human intestine - Yokoyama_2011_J.Bacteriol_193_5568
Author(s) : Yokoyama S , Oshima K , Nomura I , Hattori M , Suzuki T
Ref : Journal of Bacteriology , 193 :5568 , 2011
Abstract : Yokoyama_2011_J.Bacteriol_193_5568
ESTHER : Yokoyama_2011_J.Bacteriol_193_5568
PubMedSearch : Yokoyama_2011_J.Bacteriol_193_5568
PubMedID: 21914882
Gene_locus related to this paper: closs-f7v5q6 , closs-f7v6v0

Title : Complete genome sequence of the denitrifying and N(2)O-reducing bacterium Pseudogulbenkiania sp. strain NH8B - Ishii_2011_J.Bacteriol_193_6395
Author(s) : Ishii S , Tago K , Nishizawa T , Oshima K , Hattori M , Senoo K
Ref : Journal of Bacteriology , 193 :6395 , 2011
Abstract : Ishii_2011_J.Bacteriol_193_6395
ESTHER : Ishii_2011_J.Bacteriol_193_6395
PubMedSearch : Ishii_2011_J.Bacteriol_193_6395
PubMedID: 22038961
Gene_locus related to this paper: pseul-g2j1k1 , pseul-g2iue3 , pseul-g2j5g5

Title : Bifidobacteria can protect from enteropathogenic infection through production of acetate - Fukuda_2011_Nature_469_543
Author(s) : Fukuda S , Toh H , Hase K , Oshima K , Nakanishi Y , Yoshimura K , Tobe T , Clarke JM , Topping DL , Suzuki T , Taylor TD , Itoh K , Kikuchi J , Morita H , Hattori M , Ohno H
Ref : Nature , 469 :543 , 2011
Abstract : Fukuda_2011_Nature_469_543
ESTHER : Fukuda_2011_Nature_469_543
PubMedSearch : Fukuda_2011_Nature_469_543
PubMedID: 21270894
Gene_locus related to this paper: bifli-c2gxu7 , biflo-BL0073 , biflo-BL0336 , biflo-BL0581 , biflo-BL0582 , biflo-BL0682 , biflo-BL0787 , biflo-BL0807 , biflo-BL1109 , biflo-BL1514 , biflo-PAP , biflo-PTRB , bifln-c2gtr2

Title : Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation - Prakash_2011_Cell.Host.Microbe_10_273
Author(s) : Prakash T , Oshima K , Morita H , Fukuda S , Imaoka A , Kumar N , Sharma VK , Kim SW , Takahashi M , Saitou N , Taylor TD , Ohno H , Umesaki Y , Hattori M
Ref : Cell Host Microbe , 10 :273 , 2011
Abstract : Prakash_2011_Cell.Host.Microbe_10_273
ESTHER : Prakash_2011_Cell.Host.Microbe_10_273
PubMedSearch : Prakash_2011_Cell.Host.Microbe_10_273
PubMedID: 21925114
Gene_locus related to this paper: 9clot-g2ifk0

Title : Birth and death of genes linked to chromosomal inversion - Furuta_2011_Proc.Natl.Acad.Sci.U.S.A_108_1501
Author(s) : Furuta Y , Kawai M , Yahara K , Takahashi N , Handa N , Tsuru T , Oshima K , Yoshida M , Azuma T , Hattori M , Uchiyama I , Kobayashi I
Ref : Proc Natl Acad Sci U S A , 108 :1501 , 2011
Abstract : Furuta_2011_Proc.Natl.Acad.Sci.U.S.A_108_1501
ESTHER : Furuta_2011_Proc.Natl.Acad.Sci.U.S.A_108_1501
PubMedSearch : Furuta_2011_Proc.Natl.Acad.Sci.U.S.A_108_1501
PubMedID: 21212362

Title : Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes - Kawai_2011_BMC.Microbiol_11_104
Author(s) : Kawai M , Furuta Y , Yahara K , Tsuru T , Oshima K , Handa N , Takahashi N , Yoshida M , Azuma T , Hattori M , Uchiyama I , Kobayashi I
Ref : BMC Microbiol , 11 :104 , 2011
Abstract : Kawai_2011_BMC.Microbiol_11_104
ESTHER : Kawai_2011_BMC.Microbiol_11_104
PubMedSearch : Kawai_2011_BMC.Microbiol_11_104
PubMedID: 21575176

Title : Complete genome sequence and comparative analysis of the fish pathogen Lactococcus garvieae - Morita_2011_PLoS.One_6_e23184
Author(s) : Morita H , Toh H , Oshima K , Yoshizaki M , Kawanishi M , Nakaya K , Suzuki T , Miyauchi E , Ishii Y , Tanabe S , Murakami M , Hattori M
Ref : PLoS ONE , 6 :e23184 , 2011
Abstract : Morita_2011_PLoS.One_6_e23184
ESTHER : Morita_2011_PLoS.One_6_e23184
PubMedSearch : Morita_2011_PLoS.One_6_e23184
PubMedID: 21829716
Gene_locus related to this paper: lacgt-f9v7p0

Title : Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2 - Toh_2010_J.Bacteriol_192_1165
Author(s) : Toh H , Oshima K , Toyoda A , Ogura Y , Ooka T , Sasamoto H , Park SH , Iyoda S , Kurokawa K , Morita H , Itoh K , Taylor TD , Hayashi T , Hattori M
Ref : Journal of Bacteriology , 192 :1165 , 2010
Abstract : Toh_2010_J.Bacteriol_192_1165
ESTHER : Toh_2010_J.Bacteriol_192_1165
PubMedSearch : Toh_2010_J.Bacteriol_192_1165
PubMedID: 20008064
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C2429 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR , ecos5-d2nhh3 , yerpe-YBTT , ecolx-f4suw9

Title : Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli - Ogura_2009_Proc.Natl.Acad.Sci.U.S.A_106_17939
Author(s) : Ogura Y , Ooka T , Iguchi A , Toh H , Asadulghani M , Oshima K , Kodama T , Abe H , Nakayama K , Kurokawa K , Tobe T , Hattori M , Hayashi T
Ref : Proc Natl Acad Sci U S A , 106 :17939 , 2009
Abstract : Ogura_2009_Proc.Natl.Acad.Sci.U.S.A_106_17939
ESTHER : Ogura_2009_Proc.Natl.Acad.Sci.U.S.A_106_17939
PubMedSearch : Ogura_2009_Proc.Natl.Acad.Sci.U.S.A_106_17939
PubMedID: 19815525
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C2429 , ecoli-C4836 , ecoli-d7xp23 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR , yerpe-YBTT

Title : Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103 - Morita_2009_J.Bacteriol_191_7630
Author(s) : Morita H , Toh H , Oshima K , Murakami M , Taylor TD , Igimi S , Hattori M
Ref : Journal of Bacteriology , 191 :7630 , 2009
Abstract : Morita_2009_J.Bacteriol_191_7630
ESTHER : Morita_2009_J.Bacteriol_191_7630
PubMedSearch : Morita_2009_J.Bacteriol_191_7630
PubMedID: 19820099
Gene_locus related to this paper: lacrg-c7tei3 , lacrh-B2CZF3 , lacrh-b5qmk1 , lacrh-pepr , lacrh-pepx , lacrl-pip

Title : Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult - Oshima_2008_DNA.Res_15_375
Author(s) : Oshima K , Toh H , Ogura Y , Sasamoto H , Morita H , Park SH , Ooka T , Iyoda S , Taylor TD , Hayashi T , Itoh K , Hattori M
Ref : DNA Research , 15 :375 , 2008
Abstract : Oshima_2008_DNA.Res_15_375
ESTHER : Oshima_2008_DNA.Res_15_375
PubMedSearch : Oshima_2008_DNA.Res_15_375
PubMedID: 18931093
Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR

Title : Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production - Morita_2008_DNA.Res_15_151
Author(s) : Morita H , Toh H , Fukuda S , Horikawa H , Oshima K , Suzuki T , Murakami M , Hisamatsu S , Kato Y , Takizawa T , Fukuoka H , Yoshimura T , Itoh K , O'Sullivan DJ , McKay LL , Ohno H , Kikuchi J , Masaoka T , Hattori M
Ref : DNA Research , 15 :151 , 2008
Abstract : Morita_2008_DNA.Res_15_151
ESTHER : Morita_2008_DNA.Res_15_151
PubMedSearch : Morita_2008_DNA.Res_15_151
PubMedID: 18487258
Gene_locus related to this paper: lacfe-c0wz89 , lacre-a5vi88 , lacre-b3xl59 , lacre-b3xl60 , lacre-b3xlh0 , lacre-b3xps7 , lacre-q4jle7 , lacre-q4jlf2 , lacre-q4jll5 , lacre-q6wu85 , lacrj-b2g622

Title : The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution - Nakayama_2008_DNA.Res_15_185
Author(s) : Nakayama K , Yamashita A , Kurokawa K , Morimoto T , Ogawa M , Fukuhara M , Urakami H , Ohnishi M , Uchiyama I , Ogura Y , Ooka T , Oshima K , Tamura A , Hattori M , Hayashi T
Ref : DNA Research , 15 :185 , 2008
Abstract : Nakayama_2008_DNA.Res_15_185
ESTHER : Nakayama_2008_DNA.Res_15_185
PubMedSearch : Nakayama_2008_DNA.Res_15_185
PubMedID: 18508905
Gene_locus related to this paper: oriti-b3cqy7

Title : Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host - Toh_2006_Genome.Res_16_149
Author(s) : Toh H , Weiss BL , Perkin SA , Yamashita A , Oshima K , Hattori M , Aksoy S
Ref : Genome Res , 16 :149 , 2006
Abstract : Toh_2006_Genome.Res_16_149
ESTHER : Toh_2006_Genome.Res_16_149
PubMedSearch : Toh_2006_Genome.Res_16_149
PubMedID: 16365377
Gene_locus related to this paper: sodgm-q2nqh6 , sodgm-q2nqt2 , sodgm-q2nss6 , sodgm-q2nt34 , sodgm-q2nth7 , sodgm-q2nue4 , sodgm-q2nvf1 , sodgm-q2nwd0

Title : What influences the results in critical patients after cardiovascular surgery? - Ishikawa_2004_Asian.Cardiovasc.Thorac.Ann_12_250
Author(s) : Ishikawa S , Koyano T , Takahashi T , Sato Y , Hasegawa Y , Ohki S , Oshima K , Oki S , Kunimoto F , Morishita Y
Ref : Asian Cardiovasc Thorac Ann , 12 :250 , 2004
Abstract : Ishikawa_2004_Asian.Cardiovasc.Thorac.Ann_12_250
ESTHER : Ishikawa_2004_Asian.Cardiovasc.Thorac.Ann_12_250
PubMedSearch : Ishikawa_2004_Asian.Cardiovasc.Thorac.Ann_12_250
PubMedID: 15353466

Title : Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae - Makino_2003_Lancet_361_743
Author(s) : Makino K , Oshima K , Kurokawa K , Yokoyama K , Uda T , Tagomori K , Iijima Y , Najima M , Nakano M , Yamashita A , Kubota Y , Kimura S , Yasunaga T , Honda T , Shinagawa H , Hattori M , Iida T
Ref : Lancet , 361 :743 , 2003
Abstract : Makino_2003_Lancet_361_743
ESTHER : Makino_2003_Lancet_361_743
PubMedSearch : Makino_2003_Lancet_361_743
PubMedID: 12620739
Gene_locus related to this paper: vibpa-PHAC , vibpa-VP0148 , vibpa-VP0409 , vibpa-VP0429 , vibpa-VP0626 , vibpa-VP0693 , vibpa-VP0837 , vibpa-VP0869 , vibpa-VP0930 , vibpa-VP1025 , vibpa-VP1181 , vibpa-VP1677 , vibpa-VP1678 , vibpa-VP2790 , vibpa-VP2974 , vibpa-VPA0054 , vibpa-VPA0070 , vibpa-VPA0081 , vibpa-VPA0167 , vibpa-VPA0468 , vibpa-VPA0859 , vibpa-VPA0997 , vibpa-VPA1061 , vibpa-VPA1249 , vibpa-VPA1467 , vibpa-VPA1496 , vibpa-VPA1595 , vibpa-y674 , vibpa-y969

Title : The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans - Sasaki_2002_Nucleic.Acids.Res_30_5293
Author(s) : Sasaki Y , Ishikawa J , Yamashita A , Oshima K , Kenri T , Furuya K , Yoshino C , Horino A , Shiba T , Sasaki T , Hattori M
Ref : Nucleic Acids Research , 30 :5293 , 2002
Abstract : Sasaki_2002_Nucleic.Acids.Res_30_5293
ESTHER : Sasaki_2002_Nucleic.Acids.Res_30_5293
PubMedSearch : Sasaki_2002_Nucleic.Acids.Res_30_5293
PubMedID: 12466555
Gene_locus related to this paper: mycpe-MYPE3930 , mycpe-MYPE5460 , mycpe-MYPE8330 , mycpe-MYPE9300 , mycpe-q8eve6

Title : Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia - Akman_2002_Nat.Genet_32_402
Author(s) : Akman L , Yamashita A , Watanabe H , Oshima K , Shiba T , Hattori M , Aksoy S
Ref : Nat Genet , 32 :402 , 2002
Abstract : Akman_2002_Nat.Genet_32_402
ESTHER : Akman_2002_Nat.Genet_32_402
PubMedSearch : Akman_2002_Nat.Genet_32_402
PubMedID: 12219091
Gene_locus related to this paper: wigbr-BIOH