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Author Report for: Paulsen IT

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    Title: Draft Genome Sequence of Bacillus alcalophilus AV1934, a Classic Alkaliphile Isolated from Human Feces in 1934
    Attie O, Jayaprakash A, Shah H, Paulsen IT, Morino M, Takahashi Y, Narumi I, Sachidanandam R, Satoh K and Krulwich TA <1 more author(s)>
    Ref: Genome Announc, 2:, 2014 : PubMed

            

    Title: Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions
    Loper JE, Hassan KA, Mavrodi DV, Davis EW, 2nd, Lim CK, Shaffer BT, Elbourne LD, Stockwell VO, Hartney SL and Paulsen IT <25 more author(s)>
    Ref: PLoS Genet, 8:e1002784, 2012 : PubMed

            

    Title: Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris
    Berka RM, Grigoriev IV, Otillar R, Salamov A, Grimwood J, Reid I, Ishmael N, John T, Darmond C and Tsang A <29 more author(s)>
    Ref: Nat Biotechnol, 29:922, 2011 : PubMed

            

    Title: Adherence and motility characteristics of clinical Acinetobacter baumannii isolates
    Eijkelkamp BA, Stroeher UH, Hassan KA, Papadimitrious MS, Paulsen IT, Brown MH
    Ref: FEMS Microbiology Letters, 323:44, 2011 : PubMed

            

    Title: Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics
    Gobler CJ, Berry DL, Dyhrman ST, Wilhelm SW, Salamov A, Lobanov AV, Zhang Y, Collier JL, Wurch LL and Grigoriev IV <23 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 108:4352, 2011 : PubMed

            

    Title: Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4
    Janto B, Ahmed A, Ito M, Liu J, Hicks DB, Pagni S, Fackelmayer OJ, Smith TA, Earl J and Krulwich TA <12 more author(s)>
    Ref: Environ Microbiol, 13:3289, 2011 : PubMed

            

    Title: Complete genome sequence of the multiresistant taxonomic outlier Pseudomonas aeruginosa PA7
    Roy PH, Tetu SG, Larouche A, Elbourne L, Tremblay S, Ren Q, Dodson R, Harkins D, Shay R and Paulsen IT <2 more author(s)>
    Ref: PLoS ONE, 5:e8842, 2010 : PubMed

            

    Title: Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans
    Sievert SM, Scott KM, Klotz MG, Chain PS, Hauser LJ, Hemp J, Hugler M, Land M, Lapidus A and Simon J <6 more author(s)>
    Ref: Applied Environmental Microbiology, 74:1145, 2008 : PubMed

            

    Title: Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa
    Brayton KA, Lau AO, Herndon DR, Hannick L, Kappmeyer LS, Berens SJ, Bidwell SL, Brown WC, Crabtree J and Nene VM <18 more author(s)>
    Ref: PLoS Pathog, 3:1401, 2007 : PubMed

            

    Title: The Chlamydomonas genome reveals the evolution of key animal and plant functions
    Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ, Witman GB, Terry A, Salamov A, Fritz-Laylin LK and Grossman AR <107 more author(s)>
    Ref: Science, 318:245, 2007 : PubMed

            

    Title: Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus
    Myers GS, Parker D, Al-Hasani K, Kennan RM, Seemann T, Ren Q, Badger JH, Selengut JD, DeBoy RT and Paulsen IT <15 more author(s)>
    Ref: Nat Biotechnol, 25:569, 2007 : PubMed

            

    Title: Genome sequence of Aedes aegypti, a major arbovirus vector
    Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K and Severson DW <85 more author(s)>
    Ref: Science, 316:1718, 2007 : PubMed

            

    Title: Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus
    Badger JH, Hoover TR, Brun YV, Weiner RM, Laub MT, Alexandre G, Mrazek J, Ren Q, Paulsen IT and Ward NL <19 more author(s)>
    Ref: Journal of Bacteriology, 188:6841, 2006 : PubMed

            

    Title: Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic
    Haft DH, Paulsen IT, Ward N, Selengut JD
    Ref: BMC Biol, 4:29, 2006 : PubMed

            

    Title: Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens
    Myers GS, Rasko DA, Cheung JK, Ravel J, Seshadri R, DeBoy RT, Ren Q, Varga J, Awad MM and Paulsen IT <24 more author(s)>
    Ref: Genome Res, 16:1031, 2006 : PubMed

            

    Title: Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment
    Palenik B, Ren Q, Dupont CL, Myers GS, Heidelberg JF, Badger JH, Madupu R, Nelson WC, Brinkac LM and Paulsen IT <7 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 103:13555, 2006 : PubMed

            

    Title: The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2
    Scott KM, Sievert SM, Abril FN, Ball LA, Barrett CJ, Blake RA, Boller AJ, Chain PS, Clark JA and Zeruth GT <33 more author(s)>
    Ref: PLoS Biol, 4:e383, 2006 : PubMed

            

    Title: Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes
    Gardner MJ, Bishop R, Shah T, de Villiers EP, Carlton JM, Hall N, Ren Q, Paulsen IT, Pain A and Nene V <34 more author(s)>
    Ref: Science, 309:134, 2005 : PubMed

            

    Title: Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain
    Gill SR, Fouts DE, Archer GL, Mongodin EF, DeBoy RT, Ravel J, Paulsen IT, Kolonay JF, Brinkac L and Fraser CM <19 more author(s)>
    Ref: Journal of Bacteriology, 187:2426, 2005 : PubMed

            

    Title: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5
    Paulsen IT, Press CM, Ravel J, Kobayashi DY, Myers GS, Mavrodi DV, DeBoy RT, Seshadri R, Ren Q and Loper JE <19 more author(s)>
    Ref: Nat Biotechnol, 23:873, 2005 : PubMed

            

    Title: The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough
    Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B and Fraser CM <25 more author(s)>
    Ref: Nat Biotechnol, 22:554, 2004 : PubMed

            

    Title: Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
    Moran MA, Buchan A, Gonzalez JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R and Ward N <25 more author(s)>
    Ref: Nature, 432:910, 2004 : PubMed

            

    Title: Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species
    Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, Kolonay JF, Rasko DA, Angiuoli SV, Gill SR and Fraser CM <23 more author(s)>
    Ref: Nucleic Acids Research, 32:2386, 2004 : PubMed

            

    Title: Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes
    Seshadri R, Myers GS, Tettelin H, Eisen JA, Heidelberg JF, Dodson RJ, Davidsen TM, DeBoy RT, Fouts DE and Paulsen IT <29 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 101:5646, 2004 : PubMed

            

    Title: Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath)
    Ward N, Larsen O, Sakwa J, Bruseth L, Khouri H, Durkin AS, Dimitrov G, Jiang L, Scanlan D and Eisen JA <28 more author(s)>
    Ref: PLoS Biol, 2:e303, 2004 : PubMed

            

    Title: Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements
    Wu M, Sun LV, Vamathevan J, Riegler M, Deboy R, Brownlie JC, McGraw EA, Martin W, Esser C and Eisen JA <20 more author(s)>
    Ref: PLoS Biol, 2:E69, 2004 : PubMed

            

    Title: The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
    Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, DeBoy RT, Durkin AS and Collmer A <34 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 100:10181, 2003 : PubMed

            

    Title: Genome of Geobacter sulfurreducens: metal reduction in subsurface environments
    Methe BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N and Fraser CM <24 more author(s)>
    Ref: Science, 302:1967, 2003 : PubMed

            

    Title: Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83
    Nelson KE, Fleischmann RD, DeBoy RT, Paulsen IT, Fouts DE, Eisen JA, Daugherty SC, Dodson RJ, Durkin AS and Fraser CM <13 more author(s)>
    Ref: Journal of Bacteriology, 185:5591, 2003 : PubMed

            

    Title: Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis
    Paulsen IT, Banerjei L, Myers GS, Nelson KE, Seshadri R, Read TD, Fouts DE, Eisen JA, Gill SR and Fraser CM <22 more author(s)>
    Ref: Science, 299:2071, 2003 : PubMed

            

    Title: The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
    Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H, Fouts DE, Eisen JA and Fraser CM <42 more author(s)>
    Ref: Nature, 423:81, 2003 : PubMed

            

    Title: Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae
    Read TD, Myers GS, Brunham RC, Nelson WC, Paulsen IT, Heidelberg J, Holtzapple E, Khouri H, Federova NB and Fraser CM <11 more author(s)>
    Ref: Nucleic Acids Research, 31:2134, 2003 : PubMed

            

    Title: Complete genome sequence of the Q-fever pathogen Coxiella burnetii
    Seshadri R, Paulsen IT, Eisen JA, Read TD, Nelson KE, Nelson WC, Ward NL, Tettelin H, Davidsen TM and Heidelberg JF <14 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 100:5455, 2003 : PubMed

            

    Title: The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium
    Eisen JA, Nelson KE, Paulsen IT, Heidelberg JF, Wu M, Dodson RJ, Deboy R, Gwinn ML, Nelson WC and Fraser CM <25 more author(s)>
    Ref: Proceedings of the National Academy of Sciences of the United States of America, 99:9509, 2002 : PubMed

            

    Title: Genome sequence of the human malaria parasite Plasmodium falciparum
    Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE and Barrell B <35 more author(s)>
    Ref: Nature, 419:498, 2002 : PubMed

            

    Title: Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis
    Heidelberg JF, Paulsen IT, Nelson KE, Gaidos EJ, Nelson WC, Read TD, Eisen JA, Seshadri R, Ward N and Fraser CM <33 more author(s)>
    Ref: Nat Biotechnol, 20:1118, 2002 : PubMed

            

    Title: Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
    Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VA, Fouts DE, Gill SR, Pop M and Fraser CM <33 more author(s)>
    Ref: Environ Microbiol, 4:799, 2002 : PubMed

            

    Title: The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts
    Paulsen IT, Seshadri R, Nelson KE, Eisen JA, Heidelberg JF, Read TD, Dodson RJ, Umayam L, Brinkac LM and Fraser CM <21 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 99:13148, 2002 : PubMed

            

    Title: Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae
    Tettelin H, Masignani V, Cieslewicz MJ, Eisen JA, Peterson S, Wessels MR, Paulsen IT, Nelson KE, Margarit I and Fraser CM <33 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 99:12391, 2002 : PubMed

            

    Title: Complete genome sequence of Caulobacter crescentus
    Nierman WC, Feldblyum TV, Laub MT, Paulsen IT, Nelson KE, Eisen JA, Heidelberg JF, Alley MR, Ohta N and Fraser CM <27 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 98:4136, 2001 : PubMed

            

    Title: Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
    Tettelin H, Nelson KE, Paulsen IT, Eisen JA, Read TD, Peterson S, Heidelberg J, DeBoy RT, Haft DH and Fraser CM <29 more author(s)>
    Ref: Science, 293:498, 2001 : PubMed

            

    Title: The genome of the natural genetic engineer Agrobacterium tumefaciens C58
    Wood DW, Setubal JC, Kaul R, Monks DE, Kitajima JP, Okura VK, Zhou Y, Chen L, Wood GE and Nester EW <41 more author(s)>
    Ref: Science, 294:2317, 2001 : PubMed

            

    Title: Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen
    Stover CK, Pham XQ, Erwin AL, Mizoguchi SD, Warrener P, Hickey MJ, Brinkman FS, Hufnagle WO, Kowalik DJ and Olson MV <21 more author(s)>
    Ref: Nature, 406:959, 2000 : PubMed

            


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Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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