Report for Quail MA

Title : The genomic basis of parasitism in the Strongyloides clade of nematodes - Hunt_2016_Nat.Genet_48_299

Author(s) : Hunt VL , Tsai IJ , Coghlan A , Reid AJ , Holroyd N , Foth BJ , Tracey A , Cotton JA , Stanley EJ , Beasley H , Bennett HM , Brooks K , Harsha B , Kajitani R , Kulkarni A , Harbecke D , Nagayasu E , Nichol S , Ogura Y , Quail MA , Randle N , Xia D , Brattig NW , Soblik H , Ribeiro DM , Sanchez-Flores A , Hayashi T , Itoh T , Denver DR , Grant W , Stoltzfus JD , Lok JB , Murayama H , Wastling J , Streit A , Kikuchi T , Viney M , Berriman M

Ref : Nat Genet , 48 :299 , 2016

Abstract : Hunt_2016_Nat.Genet_48_299

ESTHER : Hunt_2016_Nat.Genet_48_299

PubMedSearch : Hunt_2016_Nat.Genet_48_299

PubMedID: 26829753

Gene_locus related to this paper: 9bila-a0a1i8c9u2 , 9bila-a0a1i8cf76 , 9bila-a0a1i8d2w3 , 9bila-a0a1i8ce18 , 9bila-a0a1i8cmc7

Title : Description and nomenclature of Neisseria meningitidis capsule locus - Harrison_2013_Emerg.Infect.Dis_19_566

Author(s) : Harrison OB , Claus H , Jiang Y , Bennett JS , Bratcher HB , Jolley KA , Corton C , Care R , Poolman JT , Zollinger WD , Frasch CE , Stephens DS , Feavers I , Frosch M , Parkhill J , Vogel U , Quail MA , Bentley SD , Maiden MC

Ref : Emerg Infect Dis , 19 :566 , 2013

Abstract : Harrison_2013_Emerg.Infect.Dis_19_566

ESTHER : Harrison_2013_Emerg.Infect.Dis_19_566

PubMedSearch : Harrison_2013_Emerg.Infect.Dis_19_566

PubMedID: 23628376

Gene_locus related to this paper: neime-h6t5x5

Title : A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus - Crossman_2013_ISME.J_7_148

Author(s) : Crossman LC , Chen H , Cerdeno-Tarraga AM , Brooks K , Quail MA , Pineiro SA , Hobley L , Sockett RE , Bentley SD , Parkhill J , Williams HN , Stine OC

Ref : Isme J , 7 :148 , 2013

Abstract : Crossman_2013_ISME.J_7_148

ESTHER : Crossman_2013_ISME.J_7_148

PubMedSearch : Crossman_2013_ISME.J_7_148

PubMedID: 22955231

Gene_locus related to this paper: bacms-e1x4r0 , bacms-e1wxp3

Title : Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis - Supply_2013_Nat.Genet_45_172

Author(s) : Supply P , Marceau M , Mangenot S , Roche D , Rouanet C , Khanna V , Majlessi L , Criscuolo A , Tap J , Pawlik A , Fiette L , Orgeur M , Fabre M , Parmentier C , Frigui W , Simeone R , Boritsch EC , Debrie AS , Willery E , Walker D , Quail MA , Ma L , Bouchier C , Salvignol G , Sayes F , Cascioferro A , Seemann T , Barbe V , Locht C , Gutierrez MC , Leclerc C , Bentley SD , Stinear TP , Brisse S , Medigue C , Parkhill J , Cruveiller S , Brosch R

Ref : Nat Genet , 45 :172 , 2013

Abstract : Supply_2013_Nat.Genet_45_172

ESTHER : Supply_2013_Nat.Genet_45_172

PubMedSearch : Supply_2013_Nat.Genet_45_172

PubMedID: 23291586

Gene_locus related to this paper: mycmm-b2ht49 , myctu-cut3 , myctu-cutas1 , myctu-cutas2 , myctu-Rv1069c , myctu-RV1215C , myctu-RV1758 , myctu-Rv2045c , myctu-RV3452 , myctu-RV3724 , myctu-Rv3802c

Title : Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy - Reid_2012_PLoS.Pathog_8_e1002567

Author(s) : Reid AJ , Vermont SJ , Cotton JA , Harris D , Hill-Cawthorne GA , Konen-Waisman S , Latham SM , Mourier T , Norton R , Quail MA , Sanders M , Shanmugam D , Sohal A , Wasmuth JD , Brunk B , Grigg ME , Howard JC , Parkinson J , Roos DS , Trees AJ , Berriman M , Pain A , Wastling JM

Ref : PLoS Pathog , 8 :e1002567 , 2012

Abstract : Reid_2012_PLoS.Pathog_8_e1002567

ESTHER : Reid_2012_PLoS.Pathog_8_e1002567

PubMedSearch : Reid_2012_PLoS.Pathog_8_e1002567

PubMedID: 22457617

Gene_locus related to this paper: neocl-f0v9d7 , neocl-f0v729 , neocl-f0vc02 , neocl-f0vce2 , neocl-f0vq55

Title : A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni - Protasio_2012_PLoS.Negl.Trop.Dis_6_e1455

Author(s) : Protasio AV , Tsai IJ , Babbage A , Nichol S , Hunt M , Aslett MA , De Silva N , Velarde GS , Anderson TJ , Clark RC , Davidson C , Dillon GP , Holroyd NE , LoVerde PT , Lloyd C , McQuillan J , Oliveira G , Otto TD , Parker-Manuel SJ , Quail MA , Wilson RA , Zerlotini A , Dunne DW , Berriman M

Ref : PLoS Negl Trop Dis , 6 :e1455 , 2012

Abstract : Protasio_2012_PLoS.Negl.Trop.Dis_6_e1455

ESTHER : Protasio_2012_PLoS.Negl.Trop.Dis_6_e1455

PubMedSearch : Protasio_2012_PLoS.Negl.Trop.Dis_6_e1455

PubMedID: 22253936

Gene_locus related to this paper: schma-c4qmk4 , schma-g4vhz1 , schma-g4vgd5

Title : Lineage-specific virulence determinants of Haemophilus influenzae biogroup aegyptius - Strouts_2012_Emerg.Infect.Dis_18_449

Author(s) : Strouts FR , Power P , Croucher NJ , Corton N , Van Tonder A , Quail MA , Langford PR , Hudson MJ , Parkhill J , Kroll JS , Bentley SD

Ref : Emerg Infect Dis , 18 :449 , 2012

Abstract : Strouts_2012_Emerg.Infect.Dis_18_449

ESTHER : Strouts_2012_Emerg.Infect.Dis_18_449

PubMedSearch : Strouts_2012_Emerg.Infect.Dis_18_449

PubMedID: 22377449

Gene_locus related to this paper: haein-pldb , neime-ESD

Title : Insights into hominid evolution from the gorilla genome sequence - Scally_2012_Nature_483_169

Author(s) : Scally A , Dutheil JY , Hillier LW , Jordan GE , Goodhead I , Herrero J , Hobolth A , Lappalainen T , Mailund T , Marques-Bonet T , McCarthy S , Montgomery SH , Schwalie PC , Tang YA , Ward MC , Xue Y , Yngvadottir B , Alkan C , Andersen LN , Ayub Q , Ball EV , Beal K , Bradley BJ , Chen Y , Clee CM , Fitzgerald S , Graves TA , Gu Y , Heath P , Heger A , Karakoc E , Kolb-Kokocinski A , Laird GK , Lunter G , Meader S , Mort M , Mullikin JC , Munch K , O'Connor TD , Phillips AD , Prado-Martinez J , Rogers AS , Sajjadian S , Schmidt D , Shaw K , Simpson JT , Stenson PD , Turner DJ , Vigilant L , Vilella AJ , Whitener W , Zhu B , Cooper DN , de Jong P , Dermitzakis ET , Eichler EE , Flicek P , Goldman N , Mundy NI , Ning Z , Odom DT , Ponting CP , Quail MA , Ryder OA , Searle SM , Warren WC , Wilson RK , Schierup MH , Rogers J , Tyler-Smith C , Durbin R

Ref : Nature , 483 :169 , 2012

Abstract : Scally_2012_Nature_483_169

ESTHER : Scally_2012_Nature_483_169

PubMedSearch : Scally_2012_Nature_483_169

PubMedID: 22398555

Gene_locus related to this paper: gorgo-g3qfr8 , gorgo-g3qgi3 , gorgo-g3r1s1 , gorgo-g3r9p9 , gorgo-a0a2i2zrx6 , gorgo-g3re16 , gorgo-g3s122 , gorgo-a0a2i2y3x8

Title : The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex - Bentley_2012_PLoS.Negl.Trop.Dis_6_e1552

Author(s) : Bentley SD , Comas I , Bryant JM , Walker D , Smith NH , Harris SR , Thurston S , Gagneux S , Wood J , Antonio M , Quail MA , Gehre F , Adegbola RA , Parkhill J , de Jong BC

Ref : PLoS Negl Trop Dis , 6 :e1552 , 2012

Abstract : Bentley_2012_PLoS.Negl.Trop.Dis_6_e1552

ESTHER : Bentley_2012_PLoS.Negl.Trop.Dis_6_e1552

PubMedSearch : Bentley_2012_PLoS.Negl.Trop.Dis_6_e1552

PubMedID: 22389744

Gene_locus related to this paper: myctu-cut3 , myctu-cutas1 , myctu-cutas2 , myctu-Rv1069c , myctu-RV1215C , myctu-RV1758 , myctu-RV3452 , myctu-RV3724 , myctu-Rv3802c

Title : A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin - Holt_2011_Genome.Biol.Evol_3_881

Author(s) : Holt DC , Holden MT , Tong SY , Castillo-Ramirez S , Clarke L , Quail MA , Currie BJ , Parkhill J , Bentley SD , Feil EJ , Giffard PM

Ref : Genome Biol Evol , 3 :881 , 2011

Abstract : Holt_2011_Genome.Biol.Evol_3_881

ESTHER : Holt_2011_Genome.Biol.Evol_3_881

PubMedSearch : Holt_2011_Genome.Biol.Evol_3_881

PubMedID: 21813488

Gene_locus related to this paper: staau-SA0897 , staau-SA2240

Title : Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06 - Bennett_2010_BMC.Genomics_11_652

Author(s) : Bennett JS , Bentley SD , Vernikos GS , Quail MA , Cherevach I , White B , Parkhill J , Maiden MC

Ref : BMC Genomics , 11 :652 , 2010

Abstract : Bennett_2010_BMC.Genomics_11_652

ESTHER : Bennett_2010_BMC.Genomics_11_652

PubMedSearch : Bennett_2010_BMC.Genomics_11_652

PubMedID: 21092259

Gene_locus related to this paper: neigo-pip , neil0-e4zan3 , neima-metx , neime-NMB0276 , neime-NMB1877

Title : Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW) - Holden_2010_J.Bacteriol_192_888

Author(s) : Holden MT , Lindsay JA , Corton C , Quail MA , Cockfield JD , Pathak S , Batra R , Parkhill J , Bentley SD , Edgeworth JD

Ref : Journal of Bacteriology , 192 :888 , 2010

Abstract : Holden_2010_J.Bacteriol_192_888

ESTHER : Holden_2010_J.Bacteriol_192_888

PubMedSearch : Holden_2010_J.Bacteriol_192_888

PubMedID: 19948800

Gene_locus related to this paper: staau-LIP , staau-MW0741 , staau-MW2456 , staau-q6gfm6 , staau-SA0569 , staau-SA0572 , staau-SA0897 , staau-SA1143 , staau-SA2240 , staau-SA2306 , staau-SA2422 , staau-SAV0321 , staau-SAV0446 , staau-SAV0457 , staau-SAV0655 , staau-SAV1014 , staau-SAV1765 , staau-SAV1793 , staau-SAV2188 , staau-SAV2350 , staau-SAV2594

Title : The genome sequence of Trypanosoma brucei gambiense, causative agent of chronic human african trypanosomiasis - Jackson_2010_PLoS.Negl.Trop.Dis_4_e658

Author(s) : Jackson AP , Sanders M , Berry A , McQuillan J , Aslett MA , Quail MA , Chukualim B , Capewell P , MacLeod A , Melville SE , Gibson W , Barry JD , Berriman M , Hertz-Fowler C

Ref : PLoS Negl Trop Dis , 4 :e658 , 2010

Abstract : Jackson_2010_PLoS.Negl.Trop.Dis_4_e658

ESTHER : Jackson_2010_PLoS.Negl.Trop.Dis_4_e658

PubMedSearch : Jackson_2010_PLoS.Negl.Trop.Dis_4_e658

PubMedID: 20404998

Gene_locus related to this paper: tryb2-q6h9e3 , tryb2-q38cd5 , tryb2-q57u20 , tryb2-q57u43 , tryb2-q57xb0 , tryb2-q57y40 , tryb2-q389w3 , tryb2-q582c7 , tryb2-q582c8 , tryb9-c9zpb9 , tryb9-c9zu35 , tryb9-d0a9w2 , trybr-PEPTB

Title : Complete genome sequence of the plant pathogen Erwinia amylovora strain ATCC 49946 - Sebaihia_2010_J.Bacteriol_192_2020

Author(s) : Sebaihia M , Bocsanczy AM , Biehl BS , Quail MA , Perna NT , Glasner JD , DeClerck GA , Cartinhour S , Schneider DJ , Bentley SD , Parkhill J , Beer SV

Ref : Journal of Bacteriology , 192 :2020 , 2010

Abstract : Sebaihia_2010_J.Bacteriol_192_2020

ESTHER : Sebaihia_2010_J.Bacteriol_192_2020

PubMedSearch : Sebaihia_2010_J.Bacteriol_192_2020

PubMedID: 20118253

Gene_locus related to this paper: erwac-d4hwt0 , erwac-d4hxs4 , erwac-d4i2q5 , erwac-d4i3s4 , erwac-d4i259 , erwae-d4idw0 , erwpe-d0fwy1 , erwse-e3dex4

Title : The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli - Petty_2010_J.Bacteriol_192_525

Author(s) : Petty NK , Bulgin R , Crepin VF , Cerdeno-Tarraga AM , Schroeder GN , Quail MA , Lennard N , Corton C , Barron A , Clark L , Toribio AL , Parkhill J , Dougan G , Frankel G , Thomson NR

Ref : Journal of Bacteriology , 192 :525 , 2010

Abstract : Petty_2010_J.Bacteriol_192_525

ESTHER : Petty_2010_J.Bacteriol_192_525

PubMedSearch : Petty_2010_J.Bacteriol_192_525

PubMedID: 19897651

Gene_locus related to this paper: citk8-bioh , citk8-y1948 , citri-d2th08 , citri-d2tjf8 , citri-d2tjy8 , citri-d2tk80 , citri-d2tmm5 , citri-d2tmq5 , citri-d2tri3 , citri-d2trm8

Title : The genome of a pathogenic rhodococcus: cooptive virulence underpinned by key gene acquisitions - Letek_2010_PLoS.Genet_6_e1001145

Author(s) : Letek M , Gonzalez P , Macarthur I , Rodriguez H , Freeman TC , Valero-Rello A , Blanco M , Buckley T , Cherevach I , Fahey R , Hapeshi A , Holdstock J , Leadon D , Navas J , Ocampo A , Quail MA , Sanders M , Scortti MM , Prescott JF , Fogarty U , Meijer WG , Parkhill J , Bentley SD , Vazquez-Boland JA

Ref : PLoS Genet , 6 :e1001145 , 2010

Abstract : Letek_2010_PLoS.Genet_6_e1001145

ESTHER : Letek_2010_PLoS.Genet_6_e1001145

PubMedSearch : Letek_2010_PLoS.Genet_6_e1001145

PubMedID: 20941392

Gene_locus related to this paper: coreq-e9sxw6 , coreq-e9t5k8 , coreq-e9t5k9 , coreq-e9t7v9 , rhoha-e9t397 , rhoe1-e4w8b9 , rhoe1-e4w8k3 , rhoe1-e4w8s0 , rhoe1-e4w9r2 , rhoe1-e4wah6 , rhoe1-e4wb26 , rhoe1-e4wb75 , rhoe1-e4wdz9 , rhoe1-e4wg39 , rhoe1-e4wg83 , rhoe1-e4whm4 , rhoe1-e4wih4 , rhoe1-e4wja5 , rhoe1-e4wjd9 , rhoe1-e4wjy2 , rhoe1-e4wat8 , coreq-e9t814 , rhoe1-e4wbp9 , coreq-e9t0s6 , coreq-e9swc5 , rhoe1-e4wix8 , rhoe1-e4wjy1

Title : The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients - Holden_2009_J.Bacteriol_191_261

Author(s) : Holden MT , Seth-Smith HM , Crossman LC , Sebaihia M , Bentley SD , Cerdeno-Tarraga AM , Thomson NR , Bason N , Quail MA , Sharp S , Cherevach I , Churcher C , Goodhead I , Hauser H , Holroyd N , Mungall K , Scott P , Walker D , White B , Rose H , Iversen P , Mil-Homens D , Rocha EP , Fialho AM , Baldwin A , Dowson C , Barrell BG , Govan JR , Vandamme P , Hart CA , Mahenthiralingam E , Parkhill J

Ref : Journal of Bacteriology , 191 :261 , 2009

Abstract : Holden_2009_J.Bacteriol_191_261

ESTHER : Holden_2009_J.Bacteriol_191_261

PubMedSearch : Holden_2009_J.Bacteriol_191_261

PubMedID: 18931103

Gene_locus related to this paper: burcj-b4e794 , 9burk-a0u8m3 , burcj-b4ek59 , burcj-b4ehl7 , burca-q1bk56 , burce-a0a088tsj6 , burcj-b4ecv6

Title : The genome of the blood fluke Schistosoma mansoni - Berriman_2009_Nature_460_352

Author(s) : Berriman M , Haas BJ , LoVerde PT , Wilson RA , Dillon GP , Cerqueira GC , Mashiyama ST , Al-Lazikani B , Andrade LF , Ashton PD , Aslett MA , Bartholomeu DC , Blandin G , Caffrey CR , Coghlan A , Coulson R , Day TA , Delcher A , DeMarco R , Djikeng A , Eyre T , Gamble JA , Ghedin E , Gu Y , Hertz-Fowler C , Hirai H , Hirai Y , Houston R , Ivens A , Johnston DA , Lacerda D , Macedo CD , McVeigh P , Ning Z , Oliveira G , Overington JP , Parkhill J , Pertea M , Pierce RJ , Protasio AV , Quail MA , Rajandream MA , Rogers J , Sajid M , Salzberg SL , Stanke M , Tivey AR , White O , Williams DL , Wortman J , Wu W , Zamanian M , Zerlotini A , Fraser-Liggett CM , Barrell BG , El-Sayed NM

Ref : Nature , 460 :352 , 2009

Abstract : Berriman_2009_Nature_460_352

ESTHER : Berriman_2009_Nature_460_352

PubMedSearch : Berriman_2009_Nature_460_352

PubMedID: 19606141

Gene_locus related to this paper: schma-ACHE1 , schma-ACHE2 , schma-c4qb79 , schma-c4qmk4 , schma-g4v9h7 , schma-BCHE , schma-g4vmf3

Title : Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium - Stabler_2009_Genome.Biol_10_R102

Author(s) : Stabler RA , He M , Dawson L , Martin M , Valiente E , Corton C , Lawley TD , Sebaihia M , Quail MA , Rose G , Gerding DN , Gibert M , Popoff MR , Parkhill J , Dougan G , Wren BW

Ref : Genome Biol , 10 :R102 , 2009

Abstract : Stabler_2009_Genome.Biol_10_R102

ESTHER : Stabler_2009_Genome.Biol_10_R102

PubMedSearch : Stabler_2009_Genome.Biol_10_R102

PubMedID: 19781061

Gene_locus related to this paper: pepdi-t4eki5 , clod6-q183v0 , clodr-c9ynf2 , pepd6-pip

Title : Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi - Holt_2009_BMC.Genomics_10_36

Author(s) : Holt KE , Thomson NR , Wain J , Langridge GC , Hasan R , Bhutta ZA , Quail MA , Norbertczak H , Walker D , Simmonds M , White B , Bason N , Mungall K , Dougan G , Parkhill J

Ref : BMC Genomics , 10 :36 , 2009

Abstract : Holt_2009_BMC.Genomics_10_36

ESTHER : Holt_2009_BMC.Genomics_10_36

PubMedSearch : Holt_2009_BMC.Genomics_10_36

PubMedID: 19159446

Title : Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens - Silby_2009_Genome.Biol_10_R51

Author(s) : Silby MW , Cerdeno-Tarraga AM , Vernikos GS , Giddens SR , Jackson RW , Preston GM , Zhang XX , Moon CD , Gehrig SM , Godfrey SA , Knight CG , Malone JG , Robinson Z , Spiers AJ , Harris S , Challis GL , Yaxley AM , Harris D , Seeger K , Murphy L , Rutter S , Squares R , Quail MA , Saunders E , Mavromatis K , Brettin TS , Bentley SD , Hothersall J , Stephens E , Thomas CM , Parkhill J , Levy SB , Rainey PB , Thomson NR

Ref : Genome Biol , 10 :R51 , 2009

Abstract : Silby_2009_Genome.Biol_10_R51

ESTHER : Silby_2009_Genome.Biol_10_R51

PubMedSearch : Silby_2009_Genome.Biol_10_R51

PubMedID: 19432983

Gene_locus related to this paper: psef5-metx , psefl-este , psefs-c3jz63 , psefs-c3jzq8 , psefs-c3k1v7 , psefs-c3k3d6 , psefs-c3k3m8 , psefs-c3k3s9 , psefs-c3k5q5 , psefs-c3k6c6 , psefs-c3k7v4 , psefs-c3k8m7 , psefs-c3k8y7 , psefs-c3k9z2 , psefs-c3k032 , psefs-c3k320 , psefs-c3k362 , psefs-c3k632 , psefs-c3k927 , psefs-c3kan9 , psefs-c3kbe5 , psefs-c3kdh9 , psefs-c3ke34 , psefs-laaa , psepf-q3k5t9 , psepf-q3k6f3 , psepf-q3k524 , psepf-q3kcu9 , psepf-q3kd07 , psepf-q3kf33 , psepf-q3kh87 , psefs-c3jxp6 , psepf-q3kf85 , psefs-c3k813 , psefs-c3keb8 , psefl-e2xkc8 , psefs-c3k9x6

Title : Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis - Holden_2009_PLoS.One_4_e6072

Author(s) : Holden MT , Hauser H , Sanders M , Ngo TH , Cherevach I , Cronin A , Goodhead I , Mungall K , Quail MA , Price C , Rabbinowitsch E , Sharp S , Croucher NJ , Chieu TB , Mai NT , Diep TS , Chinh NT , Kehoe M , Leigh JA , Ward PN , Dowson CG , Whatmore AM , Chanter N , Iversen P , Gottschalk M , Slater JD , Smith HE , Spratt BG , Xu J , Ye C , Bentley S , Barrell BG , Schultsz C , Maskell DJ , Parkhill J

Ref : PLoS ONE , 4 :e6072 , 2009

Abstract : Holden_2009_PLoS.One_4_e6072

ESTHER : Holden_2009_PLoS.One_4_e6072

PubMedSearch : Holden_2009_PLoS.One_4_e6072

PubMedID: 19603075

Gene_locus related to this paper: strsu-q302y4 , strsy-a4vus4 , strsy-a4vwf6

Title : Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis - Ward_2009_BMC.Genomics_10_54

Author(s) : Ward PN , Holden MT , Leigh JA , Lennard N , Bignell A , Barron A , Clark L , Quail MA , Woodward J , Barrell BG , Egan SA , Field TR , Maskell D , Kehoe M , Dowson CG , Chanter N , Whatmore AM , Bentley SD , Parkhill J

Ref : BMC Genomics , 10 :54 , 2009

Abstract : Ward_2009_BMC.Genomics_10_54

ESTHER : Ward_2009_BMC.Genomics_10_54

PubMedSearch : Ward_2009_BMC.Genomics_10_54

PubMedID: 19175920

Gene_locus related to this paper: stru0-b9drp1 , stru0-b9dsd7 , stru0-b9dum0 , stru0-b9dvu1 , stru0-pepx

Title : The Mycoplasma conjunctivae genome sequencing, annotation and analysis - Calderon-Copete_2009_BMC.Bioinformatics_10 Suppl 6_S7

Author(s) : Calderon-Copete SP , Wigger G , Wunderlin C , Schmidheini T , Frey J , Quail MA , Falquet L

Ref : BMC Bioinformatics , 10 Suppl 6 :S7 , 2009

Abstract : Calderon-Copete_2009_BMC.Bioinformatics_10 Suppl 6_S7

ESTHER : Calderon-Copete_2009_BMC.Bioinformatics_10 Suppl 6_S7

PubMedSearch : Calderon-Copete_2009_BMC.Bioinformatics_10 Suppl 6_S7

PubMedID: 19534756

Gene_locus related to this paper: myccr-c5j6i4 , myccr-c5j6y4

Title : Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain - Seth-Smith_2009_BMC.Genomics_10_239

Author(s) : Seth-Smith HM , Harris SR , Persson K , Marsh P , Barron A , Bignell A , Bjartling C , Clark L , Cutcliffe LT , Lambden PR , Lennard N , Lockey SJ , Quail MA , Salim O , Skilton RJ , Wang Y , Holland MJ , Parkhill J , Thomson NR , Clarke IN

Ref : BMC Genomics , 10 :239 , 2009

Abstract : Seth-Smith_2009_BMC.Genomics_10_239

ESTHER : Seth-Smith_2009_BMC.Genomics_10_239

PubMedSearch : Seth-Smith_2009_BMC.Genomics_10_239

PubMedID: 19460133

Gene_locus related to this paper: chltr-CT073 , chltr-CT136

Title : Evolution of pathogenicity and sexual reproduction in eight Candida genomes - Butler_2009_Nature_459_657

Author(s) : Butler G , Rasmussen MD , Lin MF , Santos MA , Sakthikumar S , Munro CA , Rheinbay E , Grabherr M , Forche A , Reedy JL , Agrafioti I , Arnaud MB , Bates S , Brown AJ , Brunke S , Costanzo MC , Fitzpatrick DA , de Groot PW , Harris D , Hoyer LL , Hube B , Klis FM , Kodira C , Lennard N , Logue ME , Martin R , Neiman AM , Nikolaou E , Quail MA , Quinn J , Santos MC , Schmitzberger FF , Sherlock G , Shah P , Silverstein KA , Skrzypek MS , Soll D , Staggs R , Stansfield I , Stumpf MP , Sudbery PE , Srikantha T , Zeng Q , Berman J , Berriman M , Heitman J , Gow NA , Lorenz MC , Birren BW , Kellis M , Cuomo CA

Ref : Nature , 459 :657 , 2009

Abstract : Butler_2009_Nature_459_657

ESTHER : Butler_2009_Nature_459_657

PubMedSearch : Butler_2009_Nature_459_657

PubMedID: 19465905

Gene_locus related to this paper: canal-ATG15 , canal-bna7 , canal-c4yl13 , canal-LIP1 , canal-LIP2 , canal-LIP3 , canal-LIP4 , canal-LIP5 , canal-LIP6 , canal-LIP7 , canal-LIP8 , canal-LIP9 , canal-LIP10 , canal-ppme1 , canal-q5a0c9 , canal-q5a2i9 , canal-q5a042 , canal-q5ad17 , canal-q5aeu3 , canal-q5afp8 , canal-q5ag57 , canal-q5ai09 , canal-q5ai12 , canal-q5ajt3 , canal-q5akz5 , canal-q5apu4 , canal-q59l46 , canal-q59m48 , canal-q59nw6 , canal-q59u61 , canal-q59u64 , canal-q59vp0 , canal-q59y97 , canaw-c4ykb1 , canaw-c4yrn6 , canaw-c4yrn9 , canaw-c4yrr3 , canaw-c4yrv3 , canaw-c4ys26 , cantt-c5m3d7 , cantt-c5m3y5 , cantt-c5m4x0 , cantt-c5m5e8 , cantt-c5m5w2 , cantt-c5m8s7 , cantt-c5m9c2 , cantt-c5m465 , cantt-c5m751 , cantt-c5m793 , cantt-c5m893 , cantt-c5ma78 , cantt-c5mag0 , cantt-c5mbb8 , cantt-c5mc53 , cantt-c5md87 , cantt-c5mdy3 , cantt-c5mey7 , cantt-c5mfg0 , cantt-c5mfh8 , cantt-c5mg56 , cantt-c5mgj0 , cantt-c5mh75 , cantt-c5mh80 , cantt-c5mh89 , cantt-c5mhh0 , cantt-c5mhn5 , cantt-c5mij5 , cantt-c5min7 , clal4-c4xvt8 , clal4-c4xwy4 , clal4-c4xy03 , clal4-c4xyx9 , clal4-c4xzz1 , clal4-c4y3e1 , clal4-c4y4f2 , clal4-c4y4w8 , clal4-c4y5j4 , clal4-c4y5j9 , clal4-c4y7z7 , clal4-c4y8q1 , clal4-c4y035 , clal4-c4y481 , clal4-c4y538 , clal4-c4y898 , clal4-c4yas2 , clal4-c4yba6 , clal4-c4yba7 , clal4-c4yc85 , lodel-a5drz3 , lodel-a5ds97 , lodel-a5dsc0 , lodel-a5duu4 , lodel-a5duy7 , lodel-a5dv03 , lodel-a5dv46 , lodel-a5dw16 , lodel-a5dwv7 , lodel-a5dww6 , lodel-a5dxf3 , lodel-a5e0z5 , lodel-a5e1c1 , lodel-a5e1l4 , lodel-a5e1p3 , lodel-a5e2s1 , lodel-a5e2t8 , lodel-a5e2v2 , lodel-a5e4u8 , lodel-a5e5a9 , lodel-a5e5k1 , lodel-a5e5z7 , lodel-a5e6w1 , lodel-a5e028 , lodel-atg15 , lodel-kex1 , picgu-a5d9u2 , picgu-a5dav0 , picgu-a5dbk0 , picgu-a5dc45 , picgu-a5dc73 , picgu-a5dc74 , picgu-a5dc75 , picgu-a5ddt8 , picgu-a5dev7 , picgu-a5dh90 , picgu-a5dhe3 , picgu-a5di38 , picgu-a5dj06 , picgu-a5dkd8 , picgu-a5dle9 , picgu-a5dlj5 , picgu-a5dm19 , picgu-a5dn92 , picgu-a5dnr3 , picgu-a5dnt6 , picgu-a5dqu5 , picgu-a5dr14 , picgu-a5drl3 , picgu-atg15 , picgu-bna7 , picgu-a5d9q3 , picgu-a5dag9 , clal4-c4y5a2 , clal4-c4y0l0 , cantt-c5mcb1 , clal4-c4y8j2 , cantt-c5m494 , clals-a0a202gac7 , canal-hda1 , picgu-a5dks8 , lodel-a5drs6 , canpc-g8bbk1 , cantt-kex1 , clal4-kex1 , picgu-kex1

Title : Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans - Jackson_2009_Genome.Res_19_2231

Author(s) : Jackson AP , Gamble JA , Yeomans T , Moran GP , Saunders D , Harris D , Aslett M , Barrell JF , Butler G , Citiulo F , Coleman DC , de Groot PW , Goodwin TJ , Quail MA , McQuillan J , Munro CA , Pain A , Poulter RT , Rajandream MA , Renauld H , Spiering MJ , Tivey A , Gow NA , Barrell B , Sullivan DJ , Berriman M

Ref : Genome Res , 19 :2231 , 2009

Abstract : Jackson_2009_Genome.Res_19_2231

ESTHER : Jackson_2009_Genome.Res_19_2231

PubMedSearch : Jackson_2009_Genome.Res_19_2231

PubMedID: 19745113

Gene_locus related to this paper: canal-ATG15 , canal-c4yl13 , canal-ppme1 , canal-q5a0c9 , canal-q5ad17 , canal-q5ady2 , canal-q5ag57 , canal-q5ai12 , canal-q5akz5 , canal-q5apu4 , canal-q59m48 , canal-q59nw6 , candc-b9w8x6 , candc-b9w8x7 , candc-b9w905 , candc-b9wa64 , candc-b9wc27 , candc-b9wc30 , candc-b9wc93 , candc-b9wce3 , candc-b9wdh9 , candc-b9wds3 , candc-b9whs3 , candc-b9whs6 , candc-b9whv2 , candc-b9wi60 , candc-b9wid3 , candc-b9wje5 , candc-b9wk97 , candc-CduLAc , candc-b9wkf5 , candc-b9wkj1 , candc-b9wlf0 , candc-b9wmt8 , candc-b9wmx4 , candc-b9wc51 , candc-b9wa43 , candc-b9wl19 , candc-kex1

Title : Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa - Winstanley_2009_Genome.Res_19_12

Author(s) : Winstanley C , Langille MG , Fothergill JL , Kukavica-Ibrulj I , Paradis-Bleau C , Sanschagrin F , Thomson NR , Winsor GL , Quail MA , Lennard N , Bignell A , Clarke L , Seeger K , Saunders D , Harris D , Parkhill J , Hancock RE , Brinkman FS , Levesque RC

Ref : Genome Res , 19 :12 , 2009

Abstract : Winstanley_2009_Genome.Res_19_12

ESTHER : Winstanley_2009_Genome.Res_19_12

PubMedSearch : Winstanley_2009_Genome.Res_19_12

PubMedID: 19047519

Gene_locus related to this paper: pseae-clipa , pseae-CPO , pseae-llipa , pseae-metx , pseae-PA0201 , pseae-PA0231 , pseae-PA0308 , pseae-PA0368 , pseae-PA0480 , pseae-PA0502 , pseae-PA0543 , pseae-PA0599 , pseae-PA1166 , pseae-PA1291 , pseae-PA1304 , pseae-PA1510 , pseae-PA1558 , pseae-PA1597 , pseae-PA1907 , pseae-PA2086 , pseae-PA2098 , pseae-PA2302 , pseae-PA2425 , pseae-PA2451 , pseae-PA2540 , pseae-PA2682 , pseae-PA2689 , pseae-PA2745 , pseae-PA2764 , pseae-PA2927 , pseae-PA2934 , pseae-PA2949 , pseae-PA3132 , pseae-PA3301 , pseae-PA3324 , pseae-PA3327 , pseae-PA3429 , pseae-PA3586 , pseae-PA3628 , pseae-PA3695 , pseae-PA3859 , pseae-PA3994 , pseae-PA4152 , pseae-PA4968 , pseae-PA5080 , pseae-PCHC , pseae-PCHF , pseae-PHAC2 , pseae-phaD , pseae-phag , pseae-Q9APW4 , pseae-rhla , pseae-q9i252

Title : Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81 - Croucher_2009_J.Bacteriol_191_1480

Author(s) : Croucher NJ , Walker D , Romero P , Lennard N , Paterson GK , Bason NC , Mitchell AM , Quail MA , Andrew PW , Parkhill J , Bentley SD , Mitchell TJ

Ref : Journal of Bacteriology , 191 :1480 , 2009

Abstract : Croucher_2009_J.Bacteriol_191_1480

ESTHER : Croucher_2009_J.Bacteriol_191_1480

PubMedSearch : Croucher_2009_J.Bacteriol_191_1480

PubMedID: 19114491

Gene_locus related to this paper: strpi-pepx , strpj-b8zns7 , strpn-AXE1 , strpn-b2dz20 , strpn-SP0614 , strpn-SP1343

Title : Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348\/69 - Iguchi_2009_J.Bacteriol_191_347

Author(s) : Iguchi A , Thomson NR , Ogura Y , Saunders D , Ooka T , Henderson IR , Harris D , Asadulghani M , Kurokawa K , Dean P , Kenny B , Quail MA , Thurston S , Dougan G , Hayashi T , Parkhill J , Frankel G

Ref : Journal of Bacteriology , 191 :347 , 2009

Abstract : Iguchi_2009_J.Bacteriol_191_347

ESTHER : Iguchi_2009_J.Bacteriol_191_347

PubMedSearch : Iguchi_2009_J.Bacteriol_191_347

PubMedID: 18952797

Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-YfhR

Title : Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens - Holden_2009_PLoS.Pathog_5_e1000346

Author(s) : Holden MT , Heather Z , Paillot R , Steward KF , Webb K , Ainslie F , Jourdan T , Bason NC , Holroyd NE , Mungall K , Quail MA , Sanders M , Simmonds M , Willey D , Brooks K , Aanensen DM , Spratt BG , Jolley KA , Maiden MC , Kehoe M , Chanter N , Bentley SD , Robinson C , Maskell DJ , Parkhill J , Waller AS

Ref : PLoS Pathog , 5 :e1000346 , 2009

Abstract : Holden_2009_PLoS.Pathog_5_e1000346

ESTHER : Holden_2009_PLoS.Pathog_5_e1000346

PubMedSearch : Holden_2009_PLoS.Pathog_5_e1000346

PubMedID: 19325880

Gene_locus related to this paper: stre4-c0mbg3 , stre4-pepx , strem-b4u0u4 , strem-b4u3j8 , strs7-pepx

Title : Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility - Pearson_2008_J.Bacteriol_190_4027

Author(s) : Pearson MM , Sebaihia M , Churcher C , Quail MA , Seshasayee AS , Luscombe NM , Abdellah Z , Arrosmith C , Atkin B , Chillingworth T , Hauser H , Jagels K , Moule S , Mungall K , Norbertczak H , Rabbinowitsch E , Walker D , Whithead S , Thomson NR , Rather PN , Parkhill J , Mobley HL

Ref : Journal of Bacteriology , 190 :4027 , 2008

Abstract : Pearson_2008_J.Bacteriol_190_4027

ESTHER : Pearson_2008_J.Bacteriol_190_4027

PubMedSearch : Pearson_2008_J.Bacteriol_190_4027

PubMedID: 18375554

Gene_locus related to this paper: promh-b4euu8 , promh-b4ev30 , promh-b4evj5 , promh-b4f0a1 , promh-bioh , promi-c2lhp6 , promi-c2lla8 , promi-NRPS , promi-NRPT , promi-k1gzm2 , promh-b4eve8

Title : Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287\/91 provides insights into evolutionary and host adaptation pathways - Thomson_2008_Genome.Res_18_1624

Author(s) : Thomson NR , Clayton DJ , Windhorst D , Vernikos G , Davidson S , Churcher C , Quail MA , Stevens M , Jones MA , Watson M , Barron A , Layton A , Pickard D , Kingsley RA , Bignell A , Clark L , Harris B , Ormond D , Abdellah Z , Brooks K , Cherevach I , Chillingworth T , Woodward J , Norberczak H , Lord A , Arrowsmith C , Jagels K , Moule S , Mungall K , Sanders M , Whitehead S , Chabalgoity JA , Maskell D , Humphrey T , Roberts M , Barrow PA , Dougan G , Parkhill J

Ref : Genome Res , 18 :1624 , 2008

Abstract : Thomson_2008_Genome.Res_18_1624

ESTHER : Thomson_2008_Genome.Res_18_1624

PubMedSearch : Thomson_2008_Genome.Res_18_1624

PubMedID: 18583645

Gene_locus related to this paper: salen-OPDB , salti-q8z717 , salty-AES , salty-BIOH , salty-DLHH , salty-ENTF , salty-FES , salty-IROD , salty-IROE , salty-P74847 , salty-PLDB , salty-STM0332 , salty-STM4506 , salty-STY1441 , salty-STY2428 , salty-STY3846 , salty-yafa , salty-YBFF , salty-ycfp , salty-YFBB , salty-YHET , salty-YQIA

Title : The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants - Crossman_2008_Genome.Biol_9_R74

Author(s) : Crossman LC , Gould VC , Dow JM , Vernikos GS , Okazaki A , Sebaihia M , Saunders D , Arrowsmith C , Carver T , Peters N , Adlem E , Kerhornou A , Lord A , Murphy L , Seeger K , Squares R , Rutter S , Quail MA , Rajandream MA , Harris D , Churcher C , Bentley SD , Parkhill J , Thomson NR , Avison MB

Ref : Genome Biol , 9 :R74 , 2008

Abstract : Crossman_2008_Genome.Biol_9_R74

ESTHER : Crossman_2008_Genome.Biol_9_R74

PubMedSearch : Crossman_2008_Genome.Biol_9_R74

PubMedID: 18419807

Gene_locus related to this paper: strm5-b4sjf3 , strm5-b4sly1 , strm5-b4smq6 , strm5-b4st20 , strm5-bioh , strmk-b2fhb1 , strmk-b2fju9 , strmk-b2fkx8 , strmk-b2fl50 , strmk-b2fl54 , strmk-b2flj0 , strmk-b2fnc5 , strmk-b2fre3 , strmk-b2frm1 , strmk-b2frs0 , strmk-b2fsp0 , strmk-b2ftw9 , strmk-b2fuf3 , strmk-metx , xanma-P95782 , strmk-b2fmj5 , strmk-b2fpy9 , strmk-b2ftk7 , strmk-b2frv5

Title : Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates - Thomson_2008_Genome.Res_18_161

Author(s) : Thomson NR , Holden MT , Carder C , Lennard N , Lockey SJ , Marsh P , Skipp P , O'Connor CD , Goodhead I , Norbertzcak H , Harris B , Ormond D , Rance R , Quail MA , Parkhill J , Stephens RS , Clarke IN

Ref : Genome Res , 18 :161 , 2008

Abstract : Thomson_2008_Genome.Res_18_161

ESTHER : Thomson_2008_Genome.Res_18_161

PubMedSearch : Thomson_2008_Genome.Res_18_161

PubMedID: 18032721

Gene_locus related to this paper: chltr-CT073 , chltr-CT136

Title : Genome evolution of Wolbachia strain wPip from the Culex pipiens group - Klasson_2008_Mol.Biol.Evol_25_1877

Author(s) : Klasson L , Walker T , Sebaihia M , Sanders MJ , Quail MA , Lord A , Sanders S , Earl J , O'Neill SL , Thomson N , Sinkins SP , Parkhill J

Ref : Molecular Biology Evolution , 25 :1877 , 2008

Abstract : Klasson_2008_Mol.Biol.Evol_25_1877

ESTHER : Klasson_2008_Mol.Biol.Evol_25_1877

PubMedSearch : Klasson_2008_Mol.Biol.Evol_25_1877

PubMedID: 18550617

Title : The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay - Hjerde_2008_BMC.Genomics_9_616

Author(s) : Hjerde E , Lorentzen MS , Holden MT , Seeger K , Paulsen S , Bason N , Churcher C , Harris D , Norbertczak H , Quail MA , Sanders S , Thurston S , Parkhill J , Willassen NP , Thomson NR

Ref : BMC Genomics , 9 :616 , 2008

Abstract : Hjerde_2008_BMC.Genomics_9_616

ESTHER : Hjerde_2008_BMC.Genomics_9_616

PubMedSearch : Hjerde_2008_BMC.Genomics_9_616

PubMedID: 19099551

Gene_locus related to this paper: alisl-b6elz2 , alisl-b6ek45

Title : The genome of the simian and human malaria parasite Plasmodium knowlesi - Pain_2008_Nature_455_799

Author(s) : Pain A , Bohme U , Berry AE , Mungall K , Finn RD , Jackson AP , Mourier T , Mistry J , Pasini EM , Aslett MA , Balasubrammaniam S , Borgwardt K , Brooks K , Carret C , Carver TJ , Cherevach I , Chillingworth T , Clark TG , Galinski MR , Hall N , Harper D , Harris D , Hauser H , Ivens A , Janssen CS , Keane T , Larke N , Lapp S , Marti M , Moule S , Meyer IM , Ormond D , Peters N , Sanders M , Sanders S , Sargeant TJ , Simmonds M , Smith F , Squares R , Thurston S , Tivey AR , Walker D , White B , Zuiderwijk E , Churcher C , Quail MA , Cowman AF , Turner CM , Rajandream MA , Kocken CH , Thomas AW , Newbold CI , Barrell BG , Berriman M

Ref : Nature , 455 :799 , 2008

Abstract : Pain_2008_Nature_455_799

ESTHER : Pain_2008_Nature_455_799

PubMedSearch : Pain_2008_Nature_455_799

PubMedID: 18843368

Gene_locus related to this paper: plakh-b3kz42 , plakh-b3kz45 , plakh-b3l0y4 , plakh-b3l1r3 , plakh-b3l8u5 , plakh-b3l336 , plakh-b3l571 , plakh-b3la01 , plakh-b3lb44

Title : Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis - Stinear_2008_Genome.Res_18_729

Author(s) : Stinear TP , Seemann T , Harrison PF , Jenkin GA , Davies JK , Johnson PD , Abdellah Z , Arrowsmith C , Chillingworth T , Churcher C , Clarke K , Cronin A , Davis P , Goodhead I , Holroyd N , Jagels K , Lord A , Moule S , Mungall K , Norbertczak H , Quail MA , Rabbinowitsch E , Walker D , White B , Whitehead S , Small PL , Brosch R , Ramakrishnan L , Fischbach MA , Parkhill J , Cole ST

Ref : Genome Res , 18 :729 , 2008

Abstract : Stinear_2008_Genome.Res_18_729

ESTHER : Stinear_2008_Genome.Res_18_729

PubMedSearch : Stinear_2008_Genome.Res_18_729

PubMedID: 18403782

Gene_locus related to this paper: mycmm-b2hds9 , mycmm-b2hed7 , mycmm-b2hg81 , mycmm-b2hgg2 , mycmm-b2hgg7 , mycmm-b2hhi7 , mycmm-b2hhu3 , mycmm-b2hiu3 , mycmm-b2hiu5 , mycmm-b2hiw7 , mycmm-b2hiy0 , mycmm-b2hj55 , mycmm-b2hjb4 , mycmm-b2hju3 , mycmm-b2hku1 , mycmm-b2hkw0 , mycmm-b2hlr0 , mycmm-b2hlt7 , mycmm-b2hlt8 , mycmm-b2hlt9 , mycmm-b2hlu0 , mycmm-b2hlv0 , mycmm-b2hlv1 , mycmm-b2hlv2 , mycmm-b2hlx2 , mycmm-b2hm55 , mycmm-b2hnr9 , mycmm-b2hnz5 , mycmm-b2hp80 , mycmm-b2hpp0 , mycmm-b2hq96 , mycmm-b2hr10 , mycmm-b2hsm6 , mycmm-b2hsm8 , mycmm-b2hsy0 , mycmm-b2ht06 , mycmm-b2ht20 , mycmm-b2ht49 , mycmm-dhma , mycmm-metx , mycmr-q5sdq4 , myctu-RV1683 , mycmm-b2h1k1 , mycua-a0pku2 , mycua-a0pl47 , mycua-a0plr3 , mycua-a0pm12 , mycua-a0pm14 , mycua-a0pmv0 , mycua-a0pmx9 , mycua-a0pn71 , mycua-a0ppm6 , mycua-a0pqm2 , mycua-a0pqs2 , mycua-a0prq2 , mycua-a0psb1 , mycua-a0psb4 , mycua-a0psi2 , mycua-a0pth6 , mycua-a0ptq0 , mycua-a0pu55 , mycua-a0pum4 , mycua-a0pv11 , mycua-a0pva4 , mycua-a0pwi8 , mycua-a0pwr6 , mycua-a0pwz5 , mycul-a85a , mycmm-b2hcy1 , mycua-a0pvg7 , mycmm-b2hnj4 , mycmm-b2he93 , mycua-a0pwz4 , mycmm-b2hqy3 , mycua-a0pmc3 , mycmm-b2hnn7 , mycmm-b2he68 , mycmm-b2hqm3 , mycmm-tesa

Title : Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation - Bentley_2008_J.Bacteriol_190_2150

Author(s) : Bentley SD , Corton C , Brown SE , Barron A , Clark L , Doggett J , Harris B , Ormond D , Quail MA , May G , Francis D , Knudson D , Parkhill J , Ishimaru CA

Ref : Journal of Bacteriology , 190 :2150 , 2008

Abstract : Bentley_2008_J.Bacteriol_190_2150

ESTHER : Bentley_2008_J.Bacteriol_190_2150

PubMedSearch : Bentley_2008_J.Bacteriol_190_2150

PubMedID: 18192393

Gene_locus related to this paper: clam3-a5cqb1 , clam3-a5crq6 , clam3-a5csc5 , clam3-a5css8 , clams-b0rcr0 , clams-b0rdd6 , clams-b0rdd7 , clams-b0rde2 , clams-b0rde3 , clams-b0rer7 , clams-b0rga8 , clams-b0riv5 , clam3-a5cp43 , clam3-a5cp56

Title : Meningococcal genetic variation mechanisms viewed through comparative analysis of serogroup C strain FAM18 - Bentley_2007_PLoS.Genet_3_e23

Author(s) : Bentley SD , Vernikos GS , Snyder LA , Churcher C , Arrowsmith C , Chillingworth T , Cronin A , Davis PH , Holroyd NE , Jagels K , Maddison M , Moule S , Rabbinowitsch E , Sharp S , Unwin L , Whitehead S , Quail MA , Achtman M , Barrell B , Saunders NJ , Parkhill J

Ref : PLoS Genet , 3 :e23 , 2007

Abstract : Bentley_2007_PLoS.Genet_3_e23

ESTHER : Bentley_2007_PLoS.Genet_3_e23

PubMedSearch : Bentley_2007_PLoS.Genet_3_e23

PubMedID: 17305430

Gene_locus related to this paper: neigo-pip , neima-metx , neimb-q9k0t9 , neime-ESD , neime-NMA2216 , neime-NMB0276 , neime-NMB1828 , neime-NMB1877 , neimf-a1kta9

Title : Complete genome of acute rheumatic fever-associated serotype M5 Streptococcus pyogenes strain manfredo - Holden_2007_J.Bacteriol_189_1473

Author(s) : Holden MT , Scott A , Cherevach I , Chillingworth T , Churcher C , Cronin A , Dowd L , Feltwell T , Hamlin N , Holroyd S , Jagels K , Moule S , Mungall K , Quail MA , Price C , Rabbinowitsch E , Sharp S , Skelton J , Whitehead S , Barrell BG , Kehoe M , Parkhill J

Ref : Journal of Bacteriology , 189 :1473 , 2007

Abstract : Holden_2007_J.Bacteriol_189_1473

ESTHER : Holden_2007_J.Bacteriol_189_1473

PubMedSearch : Holden_2007_J.Bacteriol_189_1473

PubMedID: 17012393

Gene_locus related to this paper: strpy-ESTA , strpy-PEPXP , strpy-SPY1308 , strpy-SPYM18.1727

Title : Comparative genomic analysis of three Leishmania species that cause diverse human disease - Peacock_2007_Nat.Genet_39_839

Author(s) : Peacock CS , Seeger K , Harris D , Murphy L , Ruiz JC , Quail MA , Peters N , Adlem E , Tivey A , Aslett M , Kerhornou A , Ivens A , Fraser A , Rajandream MA , Carver T , Norbertczak H , Chillingworth T , Hance Z , Jagels K , Moule S , Ormond D , Rutter S , Squares R , Whitehead S , Rabbinowitsch E , Arrowsmith C , White B , Thurston S , Bringaud F , Baldauf SL , Faulconbridge A , Jeffares D , Depledge DP , Oyola SO , Hilley JD , Brito LO , Tosi LR , Barrell B , Cruz AK , Mottram JC , Smith DF , Berriman M

Ref : Nat Genet , 39 :839 , 2007

Abstract : Peacock_2007_Nat.Genet_39_839

ESTHER : Peacock_2007_Nat.Genet_39_839

PubMedSearch : Peacock_2007_Nat.Genet_39_839

PubMedID: 17572675

Gene_locus related to this paper: leibr-a4h6l0 , leibr-a4h6l1 , leibr-a4h9b6 , leibr-a4h908 , leibr-a4h956 , leibr-a4h959 , leibr-a4h960 , leibr-a4hen1 , leibr-a4hf07 , leibr-a4hgl0 , leibr-a4hhu6 , leibr-a4hj94 , leibr-a4hk72 , leibr-a4hpa8 , leibr-a4hpz5 , leiin-a4huz4 , leiin-a4hxe0 , leiin-a4hxh8 , leiin-a4hxi1 , leiin-a4hxn7 , leiin-a4hyv9 , leiin-a4i1v9 , leiin-a4i4z6 , leiin-a4i6n9 , leiin-a4i7q7 , leiin-a4idl6 , leima-e9ady6 , leima-OPB , leima-q4q0t5 , leima-q4q8a8 , leima-q4q398 , leima-q4q942 , leima-q4qe85 , leima-q4qe86 , leima-q4qj45

Title : Genome plasticity of BCG and impact on vaccine efficacy - Brosch_2007_Proc.Natl.Acad.Sci.U.S.A_104_5596

Author(s) : Brosch R , Gordon SV , Garnier T , Eiglmeier K , Frigui W , Valenti P , Dos Santos S , Duthoy S , Lacroix C , Garcia-Pelayo C , Inwald JK , Golby P , Garcia JN , Hewinson RG , Behr MA , Quail MA , Churcher C , Barrell BG , Parkhill J , Cole ST

Ref : Proc Natl Acad Sci U S A , 104 :5596 , 2007

Abstract : Brosch_2007_Proc.Natl.Acad.Sci.U.S.A_104_5596

ESTHER : Brosch_2007_Proc.Natl.Acad.Sci.U.S.A_104_5596

PubMedSearch : Brosch_2007_Proc.Natl.Acad.Sci.U.S.A_104_5596

PubMedID: 17372194

Gene_locus related to this paper: myctu-a85a , myctu-a85b , myctu-a85c , myctu-bpoC , myctu-cut3 , myctu-cutas2 , myctu-d5yk66 , myctu-ephB , myctu-ephc , myctu-ephd , myctu-ephE , myctu-hpx , myctu-linb , myctu-lipG , myctu-lipJ , myctu-LIPS , myctu-lipv , myctu-LPQC , myctu-LPQP , myctu-MBTB , myctu-metx , myctu-mpt51 , myctu-MT1628 , myctu-p71654 , myctu-p95011 , myctu-PKS6 , myctu-PKS13 , myctu-ppe42 , myctu-ppe63 , myctu-Rv1430 , myctu-RV0045C , myctu-Rv0077c , myctu-Rv0151c , myctu-Rv0152c , myctu-Rv0159c , myctu-Rv0160c , myctu-rv0183 , myctu-Rv0217c , myctu-Rv0220 , myctu-Rv0272c , myctu-RV0293C , myctu-RV0457C , myctu-RV0519C , myctu-RV0774C , myctu-RV0782 , myctu-RV0840C , myctu-Rv1069c , myctu-Rv1076 , myctu-RV1123C , myctu-Rv1184c , myctu-Rv1191 , myctu-RV1192 , myctu-RV1215C , myctu-Rv1399c , myctu-Rv1400c , myctu-Rv1426c , myctu-RV1639C , myctu-RV1683 , myctu-RV1758 , myctu-Rv1800 , myctu-Rv1833c , myctu-Rv2045c , myctu-RV2054 , myctu-Rv2284 , myctu-RV2296 , myctu-Rv2385 , myctu-Rv2485c , myctu-RV2627C , myctu-RV2672 , myctu-RV2695 , myctu-RV2765 , myctu-RV2800 , myctu-RV2854 , myctu-Rv2970c , myctu-Rv3084 , myctu-Rv3097c , myctu-rv3177 , myctu-Rv3312c , myctu-RV3452 , myctu-RV3473C , myctu-Rv3487c , myctu-Rv3569c , myctu-Rv3591c , myctu-RV3724 , myctu-Rv3802c , myctu-Rv3822 , myctu-y0571 , myctu-y963 , myctu-Y1834 , myctu-y1835 , myctu-y2079 , myctu-yc88 , myctu-ym23 , myctu-ym24 , myctu-YR15 , myctu-yt28

Title : Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes - Sebaihia_2007_Genome.Res_17_1082

Author(s) : Sebaihia M , Peck MW , Minton NP , Thomson NR , Holden MT , Mitchell WJ , Carter AT , Bentley SD , Mason DR , Crossman L , Paul CJ , Ivens A , Wells-Bennik MH , Davis IJ , Cerdeno-Tarraga AM , Churcher C , Quail MA , Chillingworth T , Feltwell T , Fraser A , Goodhead I , Hance Z , Jagels K , Larke N , Maddison M , Moule S , Mungall K , Norbertczak H , Rabbinowitsch E , Sanders M , Simmonds M , White B , Whithead S , Parkhill J

Ref : Genome Res , 17 :1082 , 2007

Abstract : Sebaihia_2007_Genome.Res_17_1082

ESTHER : Sebaihia_2007_Genome.Res_17_1082

PubMedSearch : Sebaihia_2007_Genome.Res_17_1082

PubMedID: 17519437

Gene_locus related to this paper: clobh-A5I3I2 , clobh-A51055 , clob1-a7fqm2 , clob1-a7fv94 , clobl-a7gbn0 , clobh-pip , clobh-a5i3m0

Title : The genome of Rhizobium leguminosarum has recognizable core and accessory components - Young_2006_Genome.Biol_7_R34

Author(s) : Young JP , Crossman LC , Johnston AW , Thomson NR , Ghazoui ZF , Hull KH , Wexler M , Curson AR , Todd JD , Poole PS , Mauchline TH , East AK , Quail MA , Churcher C , Arrowsmith C , Cherevach I , Chillingworth T , Clarke K , Cronin A , Davis P , Fraser A , Hance Z , Hauser H , Jagels K , Moule S , Mungall K , Norbertczak H , Rabbinowitsch E , Sanders M , Simmonds M , Whitehead S , Parkhill J

Ref : Genome Biol , 7 :R34 , 2006

Abstract : Young_2006_Genome.Biol_7_R34

ESTHER : Young_2006_Genome.Biol_7_R34

PubMedSearch : Young_2006_Genome.Biol_7_R34

PubMedID: 16640791

Gene_locus related to this paper: rhiec-q2k7y0 , rhiec-q2k107 , rhiec-q2kav5 , rhiec-q2ke86 , rhil3-q1m3b7 , rhil3-q1m3u0 , rhil3-q1m4b4 , rhil3-q1m4e5 , rhil3-q1m4g3 , rhil3-q1m4h0 , rhil3-q1m5k0 , rhil3-q1m5s6 , rhil3-q1m6q0 , rhil3-q1m6u8 , rhil3-q1m6w8 , rhil3-q1m7c2 , rhil3-q1m7c3 , rhil3-q1m7i2 , rhil3-q1m7n3 , rhil3-q1m7q9 , rhil3-q1m7r8 , rhil3-q1m8d0 , rhil3-q1m8u4 , rhil3-q1m9d6 , rhil3-q1m9i6 , rhil3-q1m347 , rhil3-q1m571 , rhil3-q1m580 , rhil3-q1m672 , rhil3-q1m812 , rhil3-q1m841 , rhil3-q1m917 , rhil3-q1m919 , rhil3-q1mbv4 , rhil3-q1mbz5 , rhil3-q1mc48 , rhil3-q1mcr4 , rhil3-q1md19 , rhil3-q1mdd8 , rhil3-q1me05 , rhil3-q1mee4 , rhil3-q1mel6 , rhil3-q1men7 , rhil3-q1mf17 , rhil3-q1mf73 , rhil3-q1mf76 , rhil3-q1mfb0 , rhil3-q1mfp5 , rhil3-q1mg17 , rhil3-q1mg51 , rhil3-q1mg97 , rhil3-q1mgh3 , rhil3-q1mgh5 , rhil3-q1mgu7 , rhil3-q1mgx5 , rhil3-q1mh67 , rhil3-q1mhh7 , rhil3-q1mhz8 , rhil3-q1mi67 , rhil3-q1mi98 , rhil3-q1mia3 , rhil3-q1mig2 , rhil3-q1miz0 , rhil3-q1mj26 , rhil3-q1mj65 , rhil3-q1mjs2 , rhil3-q1mjx4 , rhil3-q1mk84 , rhil3-q1mkk8 , rhil3-q1mli7 , rhil3-q1mlj7 , rhil3-q1mm33 , rhil3-q1mmf9 , rhil3-q1mmp7 , rhil3-q1mmx0 , rhil3-q1mn42 , rhile-Q93EA8 , rhils-c6axl5 , rhils-c6b1w7 , rhilw-b5zrm4 , rhilw-b5zs97 , rhilv-j0vcs5

Title : Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii - Khan_2006_Genome.Res_16_1119

Author(s) : Khan A , Bohme U , Kelly KA , Adlem E , Brooks K , Simmonds M , Mungall K , Quail MA , Arrowsmith C , Chillingworth T , Churcher C , Harris D , Collins M , Fosker N , Fraser A , Hance Z , Jagels K , Moule S , Murphy L , O'Neil S , Rajandream MA , Saunders D , Seeger K , Whitehead S , Mayr T , Xuan X , Watanabe J , Suzuki Y , Wakaguri H , Sugano S , Sugimoto C , Paulsen I , Mackey AJ , Roos DS , Hall N , Berriman M , Barrell B , Sibley LD , Ajioka JW

Ref : Genome Res , 16 :1119 , 2006

Abstract : Khan_2006_Genome.Res_16_1119

ESTHER : Khan_2006_Genome.Res_16_1119

PubMedSearch : Khan_2006_Genome.Res_16_1119

PubMedID: 16902086

Gene_locus related to this paper: toxgo-q1jt22

Title : The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome - Sebaihia_2006_Nat.Genet_38_779

Author(s) : Sebaihia M , Wren BW , Mullany P , Fairweather NF , Minton N , Stabler R , Thomson NR , Roberts AP , Cerdeno-Tarraga AM , Wang H , Holden MT , Wright A , Churcher C , Quail MA , Baker S , Bason N , Brooks K , Chillingworth T , Cronin A , Davis P , Dowd L , Fraser A , Feltwell T , Hance Z , Holroyd S , Jagels K , Moule S , Mungall K , Price C , Rabbinowitsch E , Sharp S , Simmonds M , Stevens K , Unwin L , Whithead S , Dupuy B , Dougan G , Barrell B , Parkhill J

Ref : Nat Genet , 38 :779 , 2006

Abstract : Sebaihia_2006_Nat.Genet_38_779

ESTHER : Sebaihia_2006_Nat.Genet_38_779

PubMedSearch : Sebaihia_2006_Nat.Genet_38_779

PubMedID: 16804543

Gene_locus related to this paper: pepdi-t4eki5 , clod6-q18a60 , clod6-q183v0 , clodi-HYDD , clodr-c9ynf2 , pepd6-pip , pepdi-g6brr4

Title : Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction - Sebaihia_2006_J.Bacteriol_188_6002

Author(s) : Sebaihia M , Preston A , Maskell DJ , Kuzmiak H , Connell TD , King ND , Orndorff PE , Miyamoto DM , Thomson NR , Harris D , Goble A , Lord A , Murphy L , Quail MA , Rutter S , Squares R , Squares S , Woodward J , Parkhill J , Temple LM

Ref : Journal of Bacteriology , 188 :6002 , 2006

Abstract : Sebaihia_2006_J.Bacteriol_188_6002

ESTHER : Sebaihia_2006_J.Bacteriol_188_6002

PubMedSearch : Sebaihia_2006_J.Bacteriol_188_6002

PubMedID: 16885469

Gene_locus related to this paper: bora1-q2kti1 , bora1-q2ktw2 , bora1-q2ku63 , bora1-q2kun8 , bora1-q2kuu7 , bora1-q2kuz2 , bora1-q2kv84 , bora1-q2kvg3 , bora1-q2kw07 , bora1-q2kw58 , bora1-q2kwy4 , bora1-q2kxl0 , bora1-q2kxn8 , bora1-q2kxw5 , bora1-q2kxz8 , bora1-q2kyw6 , bora1-q2kzr8 , bora1-q2kzt4 , bora1-q2kzx4 , bora1-q2l0h1 , bora1-q2l0h9 , bora1-q2l0p4 , bora1-q2l1n9 , bora1-q2l1v4 , bora1-q2l1z1 , bora1-q2l122 , bora1-q2l209

Title : The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081 - Thomson_2006_PLoS.Genet_2_e206

Author(s) : Thomson NR , Howard S , Wren BW , Holden MT , Crossman L , Challis GL , Churcher C , Mungall K , Brooks K , Chillingworth T , Feltwell T , Abdellah Z , Hauser H , Jagels K , Maddison M , Moule S , Sanders M , Whitehead S , Quail MA , Dougan G , Parkhill J , Prentice MB

Ref : PLoS Genet , 2 :e206 , 2006

Abstract : Thomson_2006_PLoS.Genet_2_e206

ESTHER : Thomson_2006_PLoS.Genet_2_e206

PubMedSearch : Thomson_2006_PLoS.Genet_2_e206

PubMedID: 17173484

Gene_locus related to this paper: yere8-a1jik0 , yere8-a1jmx1 , yere8-a1jrp7 , yere8-bioh , yere8-menh , yere8-y3204 , yeren-fes , yeren-YPLA , yeren-YqiA , yermo-c4sfz7 , yerpe-y1616 , yerpe-YPO1501 , yerbe-c4rym7

Title : Complete genome sequence and lytic phase transcription profile of a Coccolithovirus - Wilson_2005_Science_309_1090

Author(s) : Wilson WH , Schroeder DC , Allen MJ , Holden MT , Parkhill J , Barrell BG , Churcher C , Hamlin N , Mungall K , Norbertczak H , Quail MA , Price C , Rabbinowitsch E , Walker D , Craigon M , Roy D , Ghazal P

Ref : Science , 309 :1090 , 2005

Abstract : Wilson_2005_Science_309_1090

ESTHER : Wilson_2005_Science_309_1090

PubMedSearch : Wilson_2005_Science_309_1090

PubMedID: 16099989

Gene_locus related to this paper: 9phyc-q4a2b6 , 9phyc-q4a3c9 , ehv86-q4a332

Title : The genome of the kinetoplastid parasite, Leishmania major - Ivens_2005_Science_309_436

Author(s) : Ivens AC , Peacock CS , Worthey EA , Murphy L , Aggarwal G , Berriman M , Sisk E , Rajandream MA , Adlem E , Aert R , Anupama A , Apostolou Z , Attipoe P , Bason N , Bauser C , Beck A , Beverley SM , Bianchettin G , Borzym K , Bothe G , Bruschi CV , Collins M , Cadag E , Ciarloni L , Clayton C , Coulson RM , Cronin A , Cruz AK , Davies RM , De Gaudenzi J , Dobson DE , Duesterhoeft A , Fazelina G , Fosker N , Frasch AC , Fraser A , Fuchs M , Gabel C , Goble A , Goffeau A , Harris D , Hertz-Fowler C , Hilbert H , Horn D , Huang Y , Klages S , Knights A , Kube M , Larke N , Litvin L , Lord A , Louie T , Marra M , Masuy D , Matthews K , Michaeli S , Mottram JC , Muller-Auer S , Munden H , Nelson S , Norbertczak H , Oliver K , O'Neil S , Pentony M , Pohl TM , Price C , Purnelle B , Quail MA , Rabbinowitsch E , Reinhardt R , Rieger M , Rinta J , Robben J , Robertson L , Ruiz JC , Rutter S , Saunders D , Schafer M , Schein J , Schwartz DC , Seeger K , Seyler A , Sharp S , Shin H , Sivam D , Squares R , Squares S , Tosato V , Vogt C , Volckaert G , Wambutt R , Warren T , Wedler H , Woodward J , Zhou S , Zimmermann W , Smith DF , Blackwell JM , Stuart KD , Barrell B , Myler PJ

Ref : Science , 309 :436 , 2005

Abstract : Ivens_2005_Science_309_436

ESTHER : Ivens_2005_Science_309_436

PubMedSearch : Ivens_2005_Science_309_436

PubMedID: 16020728

Gene_locus related to this paper: leima-e9ady6 , leima-L2464.12 , leima-L2802.02 , leima-OPB , leima-q4fw33 , leima-q4fwg8 , leima-q4fwj0 , leima-q4fya7 , leima-q4q0a1 , leima-q4q0t5 , leima-q4q0v0 , leima-q4q1h9 , leima-q4q2c9 , leima-q4q4j7 , leima-q4q4t6 , leima-q4q5j1 , leima-q4q6e9 , leima-q4q7v8 , leima-q4q8a8 , leima-q4q9g9 , leima-q4q080 , leima-q4q398 , leima-q4q615 , leima-q4q819 , leima-q4q871 , leima-q4q942 , leima-q4qae7 , leima-q4qb85 , leima-q4qdz7 , leima-q4qe26 , leima-q4qe31 , leima-q4qe85 , leima-q4qe86 , leima-q4qe87 , leima-q4qe90 , leima-q4qec8 , leima-q4qgz4 , leima-q4qgz5 , leima-q4qhs0 , leima-q4qj45

Title : The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation - Thomson_2005_Genome.Res_15_629

Author(s) : Thomson NR , Yeats C , Bell K , Holden MT , Bentley SD , Livingstone M , Cerdeno-Tarraga AM , Harris B , Doggett J , Ormond D , Mungall K , Clarke K , Feltwell T , Hance Z , Sanders M , Quail MA , Price C , Barrell BG , Parkhill J , Longbottom D

Ref : Genome Res , 15 :629 , 2005

Abstract : Thomson_2005_Genome.Res_15_629

ESTHER : Thomson_2005_Genome.Res_15_629

PubMedSearch : Thomson_2005_Genome.Res_15_629

PubMedID: 15837807

Gene_locus related to this paper: chlab-q5l5y2 , chlab-q5l6t6

Title : Genome of the host-cell transforming parasite Theileria annulata compared with T. parva - Pain_2005_Science_309_131

Author(s) : Pain A , Renauld H , Berriman M , Murphy L , Yeats CA , Weir W , Kerhornou A , Aslett M , Bishop R , Bouchier C , Cochet M , Coulson RM , Cronin A , de Villiers EP , Fraser A , Fosker N , Gardner M , Goble A , Griffiths-Jones S , Harris DE , Katzer F , Larke N , Lord A , Maser P , McKellar S , Mooney P , Morton F , Nene V , O'Neil S , Price C , Quail MA , Rabbinowitsch E , Rawlings ND , Rutter S , Saunders D , Seeger K , Shah T , Squares R , Squares S , Tivey A , Walker AR , Woodward J , Dobbelaere DA , Langsley G , Rajandream MA , McKeever D , Shiels B , Tait A , Barrell B , Hall N

Ref : Science , 309 :131 , 2005

Abstract : Pain_2005_Science_309_131

ESTHER : Pain_2005_Science_309_131

PubMedSearch : Pain_2005_Science_309_131

PubMedID: 15994557

Gene_locus related to this paper: thean-q4u9u6 , thean-q4ub48 , thean-q4ubz1 , thean-q4uc78 , thean-q4uc93 , thean-q4uck1 , thean-q4udw9 , thean-q4ue56 , thean-q4uf06 , thean-q4ug98 , thean-q4uhj9 , thepa-q4n349

Title : The genome of the African trypanosome Trypanosoma brucei - Berriman_2005_Science_309_416

Author(s) : Berriman M , Ghedin E , Hertz-Fowler C , Blandin G , Renauld H , Bartholomeu DC , Lennard NJ , Caler E , Hamlin NE , Haas B , Bohme U , Hannick L , Aslett MA , Shallom J , Marcello L , Hou L , Wickstead B , Alsmark UC , Arrowsmith C , Atkin RJ , Barron AJ , Bringaud F , Brooks K , Carrington M , Cherevach I , Chillingworth TJ , Churcher C , Clark LN , Corton CH , Cronin A , Davies RM , Doggett J , Djikeng A , Feldblyum T , Field MC , Fraser A , Goodhead I , Hance Z , Harper D , Harris BR , Hauser H , Hostetler J , Ivens A , Jagels K , Johnson D , Johnson J , Jones K , Kerhornou AX , Koo H , Larke N , Landfear S , Larkin C , Leech V , Line A , Lord A , MacLeod A , Mooney PJ , Moule S , Martin DM , Morgan GW , Mungall K , Norbertczak H , Ormond D , Pai G , Peacock CS , Peterson J , Quail MA , Rabbinowitsch E , Rajandream MA , Reitter C , Salzberg SL , Sanders M , Schobel S , Sharp S , Simmonds M , Simpson AJ , Tallon L , Turner CM , Tait A , Tivey AR , Van Aken S , Walker D , Wanless D , Wang S , White B , White O , Whitehead S , Woodward J , Wortman J , Adams MD , Embley TM , Gull K , Ullu E , Barry JD , Fairlamb AH , Opperdoes F , Barrell BG , Donelson JE , Hall N , Fraser CM , Melville SE , El-Sayed NM

Ref : Science , 309 :416 , 2005

Abstract : Berriman_2005_Science_309_416

ESTHER : Berriman_2005_Science_309_416

PubMedSearch : Berriman_2005_Science_309_416

PubMedID: 16020726

Gene_locus related to this paper: tryb2-q6h9e3 , tryb2-q6ha27 , tryb2-q38cd5 , tryb2-q38cd6 , tryb2-q38cd7 , tryb2-q38dc1 , tryb2-q38de4 , tryb2-q38ds6 , tryb2-q38dx1 , tryb2-q380z6 , tryb2-q382c1 , tryb2-q382l4 , tryb2-q383a9 , tryb2-q386e3 , tryb2-q387r7 , tryb2-q388n1 , tryb2-q389w3 , trybr-PEPTB , trycr-q4cq28 , trycr-q4cq94 , trycr-q4cq95 , trycr-q4cq96 , trycr-q4csm0 , trycr-q4cwv3 , trycr-q4cx66 , trycr-q4cxr6 , trycr-q4cyc5 , trycr-q4cyf6 , trycr-q4d3a2 , trycr-q4d3x3 , trycr-q4d3y4 , trycr-q4d6h1 , trycr-q4d8h8 , trycr-q4d8h9 , trycr-q4d8i0 , trycr-q4d786 , trycr-q4d975 , trycr-q4da08 , trycr-q4dap6 , trycr-q4dbm2 , trycr-q4dbn1 , trycr-q4ddw7 , trycr-q4de42 , trycr-q4dhn8 , trycr-q4dkk8 , trycr-q4dkk9 , trycr-q4dm56 , trycr-q4dqa6 , trycr-q4dt91 , trycr-q4dvp2 , trycr-q4dw34 , trycr-q4dwm3 , trycr-q4dy49 , trycr-q4dy82 , trycr-q4dzp6 , trycr-q4e3m8 , trycr-q4e4t5 , trycr-q4e5d1 , trycr-q4e5z2

Title : The genome of the protist parasite Entamoeba histolytica - Loftus_2005_Nature_433_865

Author(s) : Loftus B , Anderson I , Davies R , Alsmark UC , Samuelson J , Amedeo P , Roncaglia P , Berriman M , Hirt RP , Mann BJ , Nozaki T , Suh B , Pop M , Duchene M , Ackers J , Tannich E , Leippe M , Hofer M , Bruchhaus I , Willhoeft U , Bhattacharya A , Chillingworth T , Churcher C , Hance Z , Harris B , Harris D , Jagels K , Moule S , Mungall K , Ormond D , Squares R , Whitehead S , Quail MA , Rabbinowitsch E , Norbertczak H , Price C , Wang Z , Guillen N , Gilchrist C , Stroup SE , Bhattacharya S , Lohia A , Foster PG , Sicheritz-Ponten T , Weber C , Singh U , Mukherjee C , El-Sayed NM , Petri WA, Jr. , Clark CG , Embley TM , Barrell B , Fraser CM , Hall N

Ref : Nature , 433 :865 , 2005

Abstract : Loftus_2005_Nature_433_865

ESTHER : Loftus_2005_Nature_433_865

PubMedSearch : Loftus_2005_Nature_433_865

PubMedID: 15729342

Gene_locus related to this paper: entds-b0efg6 , entds-b0egj2 , enthi-b1n4x1 , enthi-b1n449 , enthi-b1n456 , enthi-c4lsp4 , enthi-c4lte6 , enthi-c4lu03 , enthi-c4lu54 , enthi-c4lve4 , enthi-c4lwe1 , enthi-c4m0c3 , enthi-c4m0e4 , enthi-c4m1e7 , enthi-c4m2a9 , enthi-c4m2i4 , enthi-c4m3r1 , enthi-c4m4l3 , enthi-c4m6g0 , enthi-c4m6k3 , enthi-c4m7k7 , enthi-c4m7n4 , enthi-c4m7v0 , enthi-c4m8y5 , enthi-c4m793 , enthi-c4mb48 , enthi-DPP , enthi-q50rh1 , enthi-q50ya6 , enthi-q51a37 , enthi-q51aw6 , enthi-q51ch3 , enthi-q51cz6 , enthi-q51ds3 , enthi-q513q8 , enthi-q513w3 , enthi-q519v1

Title : Extensive DNA inversions in the B. fragilis genome control variable gene expression - Cerdeno-Tarraga_2005_Science_307_1463

Author(s) : Cerdeno-Tarraga AM , Patrick S , Crossman LC , Blakely G , Abratt V , Lennard N , Poxton I , Duerden B , Harris B , Quail MA , Barron A , Clark L , Corton C , Doggett J , Holden MT , Larke N , Line A , Lord A , Norbertczak H , Ormond D , Price C , Rabbinowitsch E , Woodward J , Barrell B , Parkhill J

Ref : Science , 307 :1463 , 2005

Abstract : Cerdeno-Tarraga_2005_Science_307_1463

ESTHER : Cerdeno-Tarraga_2005_Science_307_1463

PubMedSearch : Cerdeno-Tarraga_2005_Science_307_1463

PubMedID: 15746427

Gene_locus related to this paper: bacfn-q5l8p8 , bacfn-q5lef1 , bacfn-q5lh43 , bacfn-q5lhv2 , bacfr-q64mh3 , bacfr-q64n33 , bacfr-q64qs3 , bacfr-q64t24 , bacfr-q64uj8 , bacfr-q64vx6 , bacfr-q64wh2 , bacfr-q64xp9 , bacfr-q650j0

Title : A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses - Hall_2005_Science_307_82

Author(s) : Hall N , Karras M , Raine JD , Carlton JM , Kooij TW , Berriman M , Florens L , Janssen CS , Pain A , Christophides GK , James K , Rutherford K , Harris B , Harris D , Churcher C , Quail MA , Ormond D , Doggett J , Trueman HE , Mendoza J , Bidwell SL , Rajandream MA , Carucci DJ , Yates JR, 3rd , Kafatos FC , Janse CJ , Barrell B , Turner CM , Waters AP , Sinden RE

Ref : Science , 307 :82 , 2005

Abstract : Hall_2005_Science_307_82

ESTHER : Hall_2005_Science_307_82

PubMedSearch : Hall_2005_Science_307_82

PubMedID: 15637271

Gene_locus related to this paper: plaba-q4ymx5 , plaba-q4ysr8 , plaba-q4ytp7 , plaba-q4yy11 , plaba-q4z0q9 , plaba-q4z5y0 , plaba-q4z5z8 , plaba-q4z215 , plach-q4x817 , plach-q4xb56 , plach-q4xbi1 , plach-q4xd64 , plach-q4xfc7 , plach-q4xm16 , plach-q4xmx8 , plach-q4xmy0 , plach-q4xsf9 , plach-q4xsg4 , plach-q4xsw6 , plach-q4xvc8 , plach-q4xxw0 , plach-q4xxy1 , plach-q4y0k9 , plach-q4y5u9 , plach-q4y6j0 , plach-q4y638 , plach-q4y740 , playo-PY05572 , playo-q7rq09

Title : Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus - Nierman_2005_Nature_438_1151

Author(s) : Nierman WC , Pain A , Anderson MJ , Wortman JR , Kim HS , Arroyo J , Berriman M , Abe K , Archer DB , Bermejo C , Bennett J , Bowyer P , Chen D , Collins M , Coulsen R , Davies R , Dyer PS , Farman M , Fedorova N , Feldblyum TV , Fischer R , Fosker N , Fraser A , Garcia JL , Garcia MJ , Goble A , Goldman GH , Gomi K , Griffith-Jones S , Gwilliam R , Haas B , Haas H , Harris D , Horiuchi H , Huang J , Humphray S , Jimenez J , Keller N , Khouri H , Kitamoto K , Kobayashi T , Konzack S , Kulkarni R , Kumagai T , Lafon A , Latge JP , Li W , Lord A , Lu C , Majoros WH , May GS , Miller BL , Mohamoud Y , Molina M , Monod M , Mouyna I , Mulligan S , Murphy L , O'Neil S , Paulsen I , Penalva MA , Pertea M , Price C , Pritchard BL , Quail MA , Rabbinowitsch E , Rawlins N , Rajandream MA , Reichard U , Renauld H , Robson GD , Rodriguez de Cordoba S , Rodriguez-Pena JM , Ronning CM , Rutter S , Salzberg SL , Sanchez M , Sanchez-Ferrero JC , Saunders D , Seeger K , Squares R , Squares S , Takeuchi M , Tekaia F , Turner G , Vazquez de Aldana CR , Weidman J , White O , Woodward J , Yu JH , Fraser C , Galagan JE , Asai K , Machida M , Hall N , Barrell B , Denning DW

Ref : Nature , 438 :1151 , 2005

Abstract : Nierman_2005_Nature_438_1151

ESTHER : Nierman_2005_Nature_438_1151

PubMedSearch : Nierman_2005_Nature_438_1151

PubMedID: 16372009

Gene_locus related to this paper: aspfc-b0xp50 , aspfc-b0xu40 , aspfc-b0xzj6 , aspfc-dpp5 , aspfu-apth1 , aspfu-axe1 , aspfu-CBPYA , aspfu-faec , aspfu-kex1 , aspfu-ppme1 , aspfu-q4wa39 , aspfu-q4wa78 , aspfu-q4wf56 , aspfu-q4wg73 , aspfu-q4wk44 , aspfu-q4wkh6 , aspfu-q4wnx3 , aspfu-q4wpb9 , aspfu-q4wqv2 , aspfu-q4wub2 , aspfu-q4wxr1 , aspfu-q4x0n6 , aspfu-q4x1n0 , aspfu-q5vjg7 , neofi-a1cwa6 , neofi-a1dfr9 , aspfm-a0a084bf80 , aspfu-fmac

Title : The genome of the social amoeba Dictyostelium discoideum - Eichinger_2005_Nature_435_43

Author(s) : Eichinger L , Pachebat JA , Glockner G , Rajandream MA , Sucgang R , Berriman M , Song J , Olsen R , Szafranski K , Xu Q , Tunggal B , Kummerfeld S , Madera M , Konfortov BA , Rivero F , Bankier AT , Lehmann R , Hamlin N , Davies R , Gaudet P , Fey P , Pilcher K , Chen G , Saunders D , Sodergren E , Davis P , Kerhornou A , Nie X , Hall N , Anjard C , Hemphill L , Bason N , Farbrother P , Desany B , Just E , Morio T , Rost R , Churcher C , Cooper J , Haydock S , van Driessche N , Cronin A , Goodhead I , Muzny D , Mourier T , Pain A , Lu M , Harper D , Lindsay R , Hauser H , James K , Quiles M , Madan Babu M , Saito T , Buchrieser C , Wardroper A , Felder M , Thangavelu M , Johnson D , Knights A , Loulseged H , Mungall K , Oliver K , Price C , Quail MA , Urushihara H , Hernandez J , Rabbinowitsch E , Steffen D , Sanders M , Ma J , Kohara Y , Sharp S , Simmonds M , Spiegler S , Tivey A , Sugano S , White B , Walker D , Woodward J , Winckler T , Tanaka Y , Shaulsky G , Schleicher M , Weinstock G , Rosenthal A , Cox EC , Chisholm RL , Gibbs R , Loomis WF , Platzer M , Kay RR , Williams J , Dear PH , Noegel AA , Barrell B , Kuspa A

Ref : Nature , 435 :43 , 2005

Abstract : Eichinger_2005_Nature_435_43

ESTHER : Eichinger_2005_Nature_435_43

PubMedSearch : Eichinger_2005_Nature_435_43

PubMedID: 15875012

Gene_locus related to this paper: dicdi-abhd , dicdi-ACHE , dicdi-apra , dicdi-cinbp , dicdi-CMBL , dicdi-crysp , dicdi-DPOA , dicdi-P90528 , dicdi-ppme1 , dicdi-Q8MYE7 , dicdi-q54cf7 , dicdi-q54cl7 , dicdi-q54cm0 , dicdi-q54ct5 , dicdi-q54cu1 , dicdi-q54d54 , dicdi-q54d66 , dicdi-q54dj5 , dicdi-q54dy7 , dicdi-q54ek1 , dicdi-q54eq6 , dicdi-q54et1 , dicdi-q54et7 , dicdi-q54f01 , dicdi-q54g24 , dicdi-q54g47 , dicdi-q54gi7 , dicdi-q54gw5 , dicdi-q54gx3 , dicdi-q54h23 , dicdi-q54h73 , dicdi-q54i38 , dicdi-q54ie5 , dicdi-q54in4 , dicdi-q54kz1 , dicdi-q54l36 , dicdi-q54li1 , dicdi-q54m29 , dicdi-q54n21 , dicdi-q54n35 , dicdi-q54n85 , dicdi-q54qe7 , dicdi-q54qi3 , dicdi-q54qk2 , dicdi-q54rl3 , dicdi-q54rl8 , dicdi-q54sy6 , dicdi-q54sz3 , dicdi-q54t49 , dicdi-q54t91 , dicdi-q54th2 , dicdi-q54u01 , dicdi-q54vc2 , dicdi-q54vw1 , dicdi-q54xe3 , dicdi-q54xl3 , dicdi-q54xu1 , dicdi-q54xu2 , dicdi-q54y48 , dicdi-q54yd0 , dicdi-q54ye0 , dicdi-q54yl1 , dicdi-q54yr8 , dicdi-q54z90 , dicdi-q55bx3 , dicdi-q55d01 , dicdi-q55d81 , dicdi-q55du6 , dicdi-q55eu1 , dicdi-q55eu8 , dicdi-q55fk4 , dicdi-q55gk7 , dicdi-Q54ZA6 , dicdi-q86h82 , dicdi-Q86HC9 , dicdi-Q86HM5 , dicdi-Q86HM6 , dicdi-q86iz7 , dicdi-q86jb6 , dicdi-Q86KU7 , dicdi-q550s3 , dicdi-q552c0 , dicdi-q553t5 , dicdi-q555e5 , dicdi-q555h0 , dicdi-q555h1 , dicdi-q557k5 , dicdi-q558u2 , dicdi-Q869Q8 , dicdi-u554 , dicdi-y9086 , dicdi-q54r44 , dicdi-f172a

Title : Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance - Holden_2004_Proc.Natl.Acad.Sci.U.S.A_101_9786

Author(s) : Holden MT , Feil EJ , Lindsay JA , Peacock SJ , Day NP , Enright MC , Foster TJ , Moore CE , Hurst L , Atkin R , Barron A , Bason N , Bentley SD , Chillingworth C , Chillingworth T , Churcher C , Clark L , Corton C , Cronin A , Doggett J , Dowd L , Feltwell T , Hance Z , Harris B , Hauser H , Holroyd S , Jagels K , James KD , Lennard N , Line A , Mayes R , Moule S , Mungall K , Ormond D , Quail MA , Rabbinowitsch E , Rutherford K , Sanders M , Sharp S , Simmonds M , Stevens K , Whitehead S , Barrell BG , Spratt BG , Parkhill J

Ref : Proc Natl Acad Sci U S A , 101 :9786 , 2004

Abstract : Holden_2004_Proc.Natl.Acad.Sci.U.S.A_101_9786

ESTHER : Holden_2004_Proc.Natl.Acad.Sci.U.S.A_101_9786

PubMedSearch : Holden_2004_Proc.Natl.Acad.Sci.U.S.A_101_9786

PubMedID: 15213324

Gene_locus related to this paper: staau-d2feb3 , staau-d2uin3 , staau-LIP , staau-lipas , staau-MW0741 , staau-MW2456 , staau-q6gfm6 , staau-SA0011 , staau-SA0569 , staau-SA0572 , staau-SA0897 , staau-SA1143 , staau-SA2240 , staau-SA2306 , staau-SA2367 , staau-SA2422 , staau-SAV0321 , staau-SAV0446 , staau-SAV0457 , staau-SAV0655 , staau-SAV1014 , staau-SAV1765 , staau-SAV1793 , staau-SAV2188 , staau-SAV2350 , staau-SAV2594

Title : Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei - Holden_2004_Proc.Natl.Acad.Sci.U.S.A_101_14240

Author(s) : Holden MT , Titball RW , Peacock SJ , Cerdeno-Tarraga AM , Atkins T , Crossman LC , Pitt T , Churcher C , Mungall K , Bentley SD , Sebaihia M , Thomson NR , Bason N , Beacham IR , Brooks K , Brown KA , Brown NF , Challis GL , Cherevach I , Chillingworth T , Cronin A , Crossett B , Davis P , DeShazer D , Feltwell T , Fraser A , Hance Z , Hauser H , Holroyd S , Jagels K , Keith KE , Maddison M , Moule S , Price C , Quail MA , Rabbinowitsch E , Rutherford K , Sanders M , Simmonds M , Songsivilai S , Stevens K , Tumapa S , Vesaratchavest M , Whitehead S , Yeats C , Barrell BG , Oyston PC , Parkhill J

Ref : Proc Natl Acad Sci U S A , 101 :14240 , 2004

Abstract : Holden_2004_Proc.Natl.Acad.Sci.U.S.A_101_14240

ESTHER : Holden_2004_Proc.Natl.Acad.Sci.U.S.A_101_14240

PubMedSearch : Holden_2004_Proc.Natl.Acad.Sci.U.S.A_101_14240

PubMedID: 15377794

Gene_locus related to this paper: burma-a5j5w8 , burma-a5tj72 , burma-a5tq93 , burma-metx , burma-q62a61 , burma-q62ar2.1 , burma-q62ar2.2 , burma-q62ax8 , burma-q62b60 , burma-q62b79 , burma-q62bh9 , burma-q62bl4 , burma-q62bl7 , burma-q62c00 , burma-q62cg5 , burma-q62d41 , burma-q62d56 , burma-q62d83 , burma-q62dg2 , burma-q62du7 , burma-q62e67 , burma-q62eb8 , burma-q62ed8 , burma-q62f28 , burma-q62fx7 , burma-q62g26 , burma-q62gx9 , burma-q62gy2 , burma-q62hq2 , burma-q62i62 , burma-q62ib8 , burma-q62ie8 , burma-q62j07 , burma-q62j15 , burma-q62jn5 , burma-q62jy7 , burma-q62kb7 , burma-q62kg0 , burma-q62kh9 , burma-q62lp7 , burma-q62m40 , burma-q62mc3 , burma-q62mf4 , burma-q62mq7 , burma-q629m1 , burma-q629p4 , burma-q629u0 , burp1-q3jvq2 , burps-a4lm41 , burps-q3v7s4 , burps-q63hx2 , burps-q63i95 , burps-q63im5 , burps-q63is4 , burps-q63ja6 , burps-q63ja9 , burps-q63jh5 , burps-q63l17 , burps-q63l41 , burps-q63l44 , burps-q63lt9 , burps-q63me1 , burps-q63mj7 , burps-q63mj8 , burps-q63mn8 , burps-q63mr2 , burps-q63n52 , burps-q63p18 , burps-q63p99 , burps-q63ug2 , burps-q63ug5 , burps-q63xf9 , burps-q63y36 , burps-q63y45 , burps-q63y52 , burps-q63y59 , burta-q2t474 , burps-hboh

Title : Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors - Bell_2004_Proc.Natl.Acad.Sci.U.S.A_101_11105

Author(s) : Bell KS , Sebaihia M , Pritchard L , Holden MT , Hyman LJ , Holeva MC , Thomson NR , Bentley SD , Churcher LJ , Mungall K , Atkin R , Bason N , Brooks K , Chillingworth T , Clark K , Doggett J , Fraser A , Hance Z , Hauser H , Jagels K , Moule S , Norbertczak H , Ormond D , Price C , Quail MA , Sanders M , Walker D , Whitehead S , Salmond GP , Birch PR , Parkhill J , Toth IK

Ref : Proc Natl Acad Sci U S A , 101 :11105 , 2004

Abstract : Bell_2004_Proc.Natl.Acad.Sci.U.S.A_101_11105

ESTHER : Bell_2004_Proc.Natl.Acad.Sci.U.S.A_101_11105

PubMedSearch : Bell_2004_Proc.Natl.Acad.Sci.U.S.A_101_11105

PubMedID: 15263089

Gene_locus related to this paper: erwct-q6czi2 , erwct-q6czl9 , erwct-q6czu1 , erwct-q6d0l3 , erwct-q6d1e3 , erwct-q6d1l9 , erwct-q6d2k4 , erwct-q6d2x2 , erwct-q6d3m9 , erwct-q6d4b7 , erwct-q6d6t8 , erwct-q6d7j1 , erwct-q6d7p5 , erwct-q6d7w3 , erwct-q6d8k2 , erwct-q6d8q7 , erwct-q6d9l2 , erwct-q6d041 , erwct-q6d134 , erwct-q6d207 , erwct-q6d508 , erwct-q6d615 , erwct-q6d673 , erwct-q6d739.1 , erwct-q6d739.2 , erwct-q6d884 , erwct-q6da42 , erwct-q6da66 , erwct-q6dac1 , erwct-q6dar9 , erwct-Y3465

Title : Insight into the genome of Aspergillus fumigatus: analysis of a 922 kb region encompassing the nitrate assimilation gene cluster - Pain_2004_Fungal.Genet.Biol_41_443

Author(s) : Pain A , Woodward J , Quail MA , Anderson MJ , Clark R , Collins M , Fosker N , Fraser A , Harris D , Larke N , Murphy L , Humphray S , O'Neil S , Pertea M , Price C , Rabbinowitsch E , Rajandream MA , Salzberg S , Saunders D , Seeger K , Sharp S , Warren T , Denning DW , Barrell B , Hall N

Ref : Fungal Genet Biol , 41 :443 , 2004

Abstract : Pain_2004_Fungal.Genet.Biol_41_443

ESTHER : Pain_2004_Fungal.Genet.Biol_41_443

PubMedSearch : Pain_2004_Fungal.Genet.Biol_41_443

PubMedID: 14998527

Gene_locus related to this paper: aspfu-q6my76 , aspfu-q6myf7 , aspfu-q6myz3

Title : Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica - Parkhill_2003_Nat.Genet_35_32

Author(s) : Parkhill J , Sebaihia M , Preston A , Murphy LD , Thomson N , Harris DE , Holden MT , Churcher CM , Bentley SD , Mungall KL , Cerdeno-Tarraga AM , Temple L , James K , Harris B , Quail MA , Achtman M , Atkin R , Baker S , Basham D , Bason N , Cherevach I , Chillingworth T , Collins M , Cronin A , Davis P , Doggett J , Feltwell T , Goble A , Hamlin N , Hauser H , Holroyd S , Jagels K , Leather S , Moule S , Norberczak H , O'Neil S , Ormond D , Price C , Rabbinowitsch E , Rutter S , Sanders M , Saunders D , Seeger K , Sharp S , Simmonds M , Skelton J , Squares R , Squares S , Stevens K , Unwin L , Whitehead S , Barrell BG , Maskell DJ

Ref : Nat Genet , 35 :32 , 2003

Abstract : Parkhill_2003_Nat.Genet_35_32

ESTHER : Parkhill_2003_Nat.Genet_35_32

PubMedSearch : Parkhill_2003_Nat.Genet_35_32

PubMedID: 12910271

Gene_locus related to this paper: borbr-BB0273 , borbr-BB0570 , borbr-BB0670 , borbr-BB1064 , borbr-BB1079 , borbr-BB1247 , borbr-BB1498 , borbr-BB2718 , borbr-BB4129 , borbr-BB4247 , borbr-MHPC , borbr-q7wdw1 , borbr-q7wiz8 , borbr-q7wk25 , borbr-q7wmc2 , borbr-q7wpd9 , borpa-q7w3f3 , borpa-q7w9v8 , borpe-BIOH , borpe-BP0300 , borpe-BP2114 , borpe-BP2146 , borpe-BP2511 , borpe-BP3096 , borpe-BP3623 , borpe-BP3691 , borpe-CATD2 , borpe-METX , borpe-O30449 , borpe-PHBC , borpe-q7vsl4 , borpe-q7vt07 , borpe-q7vtg0 , borpe-q7vtv2 , borpe-q7vus4 , borpe-q7vuv4 , borpe-q7vv11 , borpe-q7vv48 , borpe-q7vvf6 , borpe-q7vwu4 , borpe-q7vyn0 , borpe-q7vyq4 , borpe-q7vz26 , borpe-q7vzb4 , borpe-q7vzj6 , borpe-q7w073

Title : Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei - Bentley_2003_Lancet_361_637

Author(s) : Bentley SD , Maiwald M , Murphy LD , Pallen MJ , Yeats CA , Dover LG , Norbertczak HT , Besra GS , Quail MA , Harris DE , von Herbay A , Goble A , Rutter S , Squares R , Squares S , Barrell BG , Parkhill J , Relman DA

Ref : Lancet , 361 :637 , 2003

Abstract : Bentley_2003_Lancet_361_637

ESTHER : Bentley_2003_Lancet_361_637

PubMedSearch : Bentley_2003_Lancet_361_637

PubMedID: 12606174

Gene_locus related to this paper: trowh-TW083.1 , trowh-TW083.2 , trowh-TWT693

Title : The DNA sequence of chromosome I of an African trypanosome: gene content, chromosome organisation, recombination and polymorphism - Hall_2003_Nucleic.Acids.Res_31_4864

Author(s) : Hall N , Berriman M , Lennard NJ , Harris BR , Hertz-Fowler C , Bart-Delabesse EN , Gerrard CS , Atkin RJ , Barron AJ , Bowman S , Bray-Allen SP , Bringaud F , Clark LN , Corton CH , Cronin A , Davies R , Doggett J , Fraser A , Gruter E , Hall S , Harper AD , Kay MP , Leech V , Mayes R , Price C , Quail MA , Rabbinowitsch E , Reitter C , Rutherford K , Sasse J , Sharp S , Shownkeen R , MacLeod A , Taylor S , Tweedie A , Turner CM , Tait A , Gull K , Barrell B , Melville SE

Ref : Nucleic Acids Research , 31 :4864 , 2003

Abstract : Hall_2003_Nucleic.Acids.Res_31_4864

ESTHER : Hall_2003_Nucleic.Acids.Res_31_4864

PubMedSearch : Hall_2003_Nucleic.Acids.Res_31_4864

PubMedID: 12907729

Gene_locus related to this paper: trybr-CHR1.244 , trybr-CHR1.412 , trybr-Q4GYA0

Title : The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129 - Cerdeno-Tarraga_2003_Nucleic.Acids.Res_31_6516

Author(s) : Cerdeno-Tarraga AM , Efstratiou A , Dover LG , Holden MT , Pallen M , Bentley SD , Besra GS , Churcher C , James KD , De Zoysa A , Chillingworth T , Cronin A , Dowd L , Feltwell T , Hamlin N , Holroyd S , Jagels K , Moule S , Quail MA , Rabbinowitsch E , Rutherford KM , Thomson NR , Unwin L , Whitehead S , Barrell BG , Parkhill J

Ref : Nucleic Acids Research , 31 :6516 , 2003

Abstract : Cerdeno-Tarraga_2003_Nucleic.Acids.Res_31_6516

ESTHER : Cerdeno-Tarraga_2003_Nucleic.Acids.Res_31_6516

PubMedSearch : Cerdeno-Tarraga_2003_Nucleic.Acids.Res_31_6516

PubMedID: 14602910

Gene_locus related to this paper: cordi-DIP1007 , cordi-DIP1729 , cordi-q6ned6 , cordi-q6nes3 , cordi-q6nes4 , cordi-q6nes6 , cordi-q6nes8 , cordi-q6nev5 , cordi-q6nex0 , cordi-q6nez6 , cordi-q6nf79 , cordi-q6nfa8 , cordi-q6nfg5 , cordi-q6nfz1 , cordi-q6ng42 , cordi-q6ngl8 , cordi-q6nhd8 , cordi-q6niz3 , cordi-q6nj46 , cordi-q6njn3 , cordi-q6njn4 , cordi-q6njt5 , cordi-q6nkb6 , cordk-h2hkn5

Title : The genome sequence of Schizosaccharomyces pombe - Wood_2002_Nature_415_871

Author(s) : Wood V , Gwilliam R , Rajandream MA , Lyne M , Lyne R , Stewart A , Sgouros J , Peat N , Hayles J , Baker S , Basham D , Bowman S , Brooks K , Brown D , Brown S , Chillingworth T , Churcher C , Collins M , Connor R , Cronin A , Davis P , Feltwell T , Fraser A , Gentles S , Goble A , Hamlin N , Harris D , Hidalgo J , Hodgson G , Holroyd S , Hornsby T , Howarth S , Huckle EJ , Hunt S , Jagels K , James K , Jones L , Jones M , Leather S , McDonald S , McLean J , Mooney P , Moule S , Mungall K , Murphy L , Niblett D , Odell C , Oliver K , O'Neil S , Pearson D , Quail MA , Rabbinowitsch E , Rutherford K , Rutter S , Saunders D , Seeger K , Sharp S , Skelton J , Simmonds M , Squares R , Squares S , Stevens K , Taylor K , Taylor RG , Tivey A , Walsh S , Warren T , Whitehead S , Woodward J , Volckaert G , Aert R , Robben J , Grymonprez B , Weltjens I , Vanstreels E , Rieger M , Schafer M , Muller-Auer S , Gabel C , Fuchs M , Dusterhoft A , Fritzc C , Holzer E , Moestl D , Hilbert H , Borzym K , Langer I , Beck A , Lehrach H , Reinhardt R , Pohl TM , Eger P , Zimmermann W , Wedler H , Wambutt R , Purnelle B , Goffeau A , Cadieu E , Dreano S , Gloux S , Lelaure V , Mottier S , Galibert F , Aves SJ , Xiang Z , Hunt C , Moore K , Hurst SM , Lucas M , Rochet M , Gaillardin C , Tallada VA , Garzon A , Thode G , Daga RR , Cruzado L , Jimenez J , Sanchez M , del Rey F , Benito J , Dominguez A , Revuelta JL , Moreno S , Armstrong J , Forsburg SL , Cerutti L , Lowe T , McCombie WR , Paulsen I , Potashkin J , Shpakovski GV , Ussery D , Barrell BG , Nurse P

Ref : Nature , 415 :871 , 2002

Abstract : Wood_2002_Nature_415_871

ESTHER : Wood_2002_Nature_415_871

PubMedSearch : Wood_2002_Nature_415_871

PubMedID: 11859360

Gene_locus related to this paper: schpo-APTH1 , schpo-be46 , schpo-BST1 , schpo-C2E11.08 , schpo-C14C4.15C , schpo-C22H12.03 , schpo-C23C4.16C , schpo-C57A10.08C , schpo-dyr , schpo-este1 , schpo-KEX1 , schpo-PCY1 , schpo-pdat , schpo-PLG7 , schpo-ppme1 , schpo-q9c0y8 , schpo-SPAC4A8.06C , schpo-C22A12.06C , schpo-SPAC977.15 , schpo-SPAPB1A11.02 , schpo-SPBC14C8.15 , schpo-SPBC530.12C , schpo-SPBC1711.12 , schpo-SPBPB2B2.02 , schpo-SPCC5E4.05C , schpo-SPCC417.12 , schpo-SPCC1672.09 , schpo-yb4e , schpo-yblh , schpo-ydw6 , schpo-ye7a , schpo-ye63 , schpo-ye88 , schpo-yeld , schpo-yk68 , schpo-clr3 , schpo-ykv6

Title : Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13 - Hall_2002_Nature_419_527

Author(s) : Hall N , Pain A , Berriman M , Churcher C , Harris B , Harris D , Mungall K , Bowman S , Atkin R , Baker S , Barron A , Brooks K , Buckee CO , Burrows C , Cherevach I , Chillingworth C , Chillingworth T , Christodoulou Z , Clark L , Clark R , Corton C , Cronin A , Davies R , Davis P , Dear P , Dearden F , Doggett J , Feltwell T , Goble A , Goodhead I , Gwilliam R , Hamlin N , Hance Z , Harper D , Hauser H , Hornsby T , Holroyd S , Horrocks P , Humphray S , Jagels K , James KD , Johnson D , Kerhornou A , Knights A , Konfortov B , Kyes S , Larke N , Lawson D , Lennard N , Line A , Maddison M , McLean J , Mooney P , Moule S , Murphy L , Oliver K , Ormond D , Price C , Quail MA , Rabbinowitsch E , Rajandream MA , Rutter S , Rutherford KM , Sanders M , Simmonds M , Seeger K , Sharp S , Smith R , Squares R , Squares S , Stevens K , Taylor K , Tivey A , Unwin L , Whitehead S , Woodward J , Sulston JE , Craig A , Newbold C , Barrell BG

Ref : Nature , 419 :527 , 2002

Abstract : Hall_2002_Nature_419_527

ESTHER : Hall_2002_Nature_419_527

PubMedSearch : Hall_2002_Nature_419_527

PubMedID: 12368867

Gene_locus related to this paper: plaf7-c0h4q4 , plafa-MAL6P1.135 , plafa-PFD0185C , plafa-PFI1775W , plafa-PFI1800W

Title : Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) - Bentley_2002_Nature_417_141

Author(s) : Bentley SD , Chater KF , Cerdeno-Tarraga AM , Challis GL , Thomson NR , James KD , Harris DE , Quail MA , Kieser H , Harper D , Bateman A , Brown S , Chandra G , Chen CW , Collins M , Cronin A , Fraser A , Goble A , Hidalgo J , Hornsby T , Howarth S , Huang CH , Kieser T , Larke L , Murphy L , Oliver K , O'Neil S , Rabbinowitsch E , Rajandream MA , Rutherford K , Rutter S , Seeger K , Saunders D , Sharp S , Squares R , Squares S , Taylor K , Warren T , Wietzorrek A , Woodward J , Barrell BG , Parkhill J , Hopwood DA

Ref : Nature , 417 :141 , 2002

Abstract : Bentley_2002_Nature_417_141

ESTHER : Bentley_2002_Nature_417_141

PubMedSearch : Bentley_2002_Nature_417_141

PubMedID: 12000953

Gene_locus related to this paper: strco-cxest , strco-cxest2 , strco-ester , strco-estli , strco-MMYT , strco-ORF3 , strco-q9f2m1 , strco-q9rdq9 , strco-q9x8r0 , strco-SC1A6.21 , strco-SC3F7.14 , strco-SC4C2.18 , strco-SC10F4.23 , strco-SCBAC20F6.10 , strco-SCD95A , strco-SCE8.12C , strco-SCE63.01 , strco-SCF43.16C , strco-SCJ9A.33C , strco-SCO0047 , strco-SCO0135 , strco-SCO0490 , strco-SCO0503 , strco-SCO0556.1 , strco-SCO0556.2 , strco-SCO1265 , strco-SCO2123 , strco-SCO2516 , strco-SCO2723 , strco-SCO2761 , strco-SCO3396 , strco-SCO3772 , strco-SCO4160 , strco-SCO4900 , strco-SCO5215 , strco-SCO5986 , strco-SCO6351 , strco-SCO6488 , strco-SCO7057 , strco-SCO7121 , strco-SCO7396 , strco-SCO7609 , strco-SCOT , strco-SLPD , strco-TAP

Title : Sequence and analysis of chromosome 2 of Dictyostelium discoideum - Glockner_2002_Nature_418_79

Author(s) : Glockner G , Eichinger L , Szafranski K , Pachebat JA , Bankier AT , Dear PH , Lehmann R , Baumgart C , Parra G , Abril JF , Guigo R , Kumpf K , Tunggal B , Cox E , Quail MA , Platzer M , Rosenthal A , Noegel AA

Ref : Nature , 418 :79 , 2002

Abstract : Glockner_2002_Nature_418_79

ESTHER : Glockner_2002_Nature_418_79

PubMedSearch : Glockner_2002_Nature_418_79

PubMedID: 12097910

Gene_locus related to this paper: dicdi-crd2p , dicdi-DPOA , dicdi-P90528 , dicdi-Q8MMX8 , dicdi-Q8MYE7 , dicdi-q54z90 , dicdi-Q75JJ5 , dicdi-Q54ZA6 , dicdi-q86h82 , dicdi-Q86HC9 , dicdi-Q86HM5 , dicdi-Q86HM6 , dicdi-Q86I88 , dicdi-q86iz7 , dicdi-Q86KU7 , dicdi-q552c0 , dicdi-q553t5 , dicdi-q555h0 , dicdi-q555h1 , dicdi-q557k5 , dicdi-Q869Q8 , dicdi-f172a

Title : Massive gene decay in the leprosy bacillus - Cole_2001_Nature_409_1007

Author(s) : Cole ST , Eiglmeier K , Parkhill J , James KD , Thomson NR , Wheeler PR , Honore N , Garnier T , Churcher C , Harris D , Mungall K , Basham D , Brown D , Chillingworth T , Connor R , Davies RM , Devlin K , Duthoy S , Feltwell T , Fraser A , Hamlin N , Holroyd S , Hornsby T , Jagels K , Lacroix C , Maclean J , Moule S , Murphy L , Oliver K , Quail MA , Rajandream MA , Rutherford KM , Rutter S , Seeger K , Simon S , Simmonds M , Skelton J , Squares R , Squares S , Stevens K , Taylor K , Whitehead S , Woodward JR , Barrell BG

Ref : Nature , 409 :1007 , 2001

Abstract : Cole_2001_Nature_409_1007

ESTHER : Cole_2001_Nature_409_1007

PubMedSearch : Cole_2001_Nature_409_1007

PubMedID: 11234002

Gene_locus related to this paper: mycle-a85a , mycle-a85b , mycle-a85c , mycle-lipG , mycle-LPQC , mycle-metx , mycle-ML0314 , mycle-ML0370 , mycle-ML0376 , mycle-ML1339 , mycle-ML1444 , mycle-ML1632 , mycle-ML1633 , mycle-ML1921 , mycle-ML2269 , mycle-ML2297 , mycle-ML2359 , mycle-ML2603 , mycle-mpt5 , mycle-PKS13 , mycle-PTRB , mycle-q9cc62 , mycle-q9cdb3

Title : Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491 - Parkhill_2000_Nature_404_502

Author(s) : Parkhill J , Achtman M , James KD , Bentley SD , Churcher C , Klee SR , Morelli G , Basham D , Brown D , Chillingworth T , Davies RM , Davis P , Devlin K , Feltwell T , Hamlin N , Holroyd S , Jagels K , Leather S , Moule S , Mungall K , Quail MA , Rajandream MA , Rutherford KM , Simmonds M , Skelton J , Whitehead S , Spratt BG , Barrell BG

Ref : Nature , 404 :502 , 2000

Abstract : Parkhill_2000_Nature_404_502

ESTHER : Parkhill_2000_Nature_404_502

PubMedSearch : Parkhill_2000_Nature_404_502

PubMedID: 10761919

Gene_locus related to this paper: neima-metx , neimb-q9k0t9 , neime-ESD , neime-NMA2216 , neime-NMB0276 , neime-NMB1877 , neimf-a1kta9 , neime-r0tza2

Title : The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences - Parkhill_2000_Nature_403_665

Author(s) : Parkhill J , Wren BW , Mungall K , Ketley JM , Churcher C , Basham D , Chillingworth T , Davies RM , Feltwell T , Holroyd S , Jagels K , Karlyshev AV , Moule S , Pallen MJ , Penn CW , Quail MA , Rajandream MA , Rutherford KM , van Vliet AH , Whitehead S , Barrell BG

Ref : Nature , 403 :665 , 2000

Abstract : Parkhill_2000_Nature_403_665

ESTHER : Parkhill_2000_Nature_403_665

PubMedSearch : Parkhill_2000_Nature_403_665

PubMedID: 10688204

Gene_locus related to this paper: camco-e0qbj3 , camco-q4hhu5 , camje-a3zji1 , camje-CJ0796C , camjr-q5ht69 , camju-a3yll6 , camju-Q9ZF63

Title : The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum - Bowman_1999_Nature_400_532

Author(s) : Bowman S , Lawson D , Basham D , Brown D , Chillingworth T , Churcher CM , Craig A , Davies RM , Devlin K , Feltwell T , Gentles S , Gwilliam R , Hamlin N , Harris D , Holroyd S , Hornsby T , Horrocks P , Jagels K , Jassal B , Kyes S , McLean J , Moule S , Mungall K , Murphy L , Oliver K , Quail MA , Rajandream MA , Rutter S , Skelton J , Squares R , Squares S , Sulston JE , Whitehead S , Woodward JR , Newbold C , Barrell BG

Ref : Nature , 400 :532 , 1999

Abstract : Bowman_1999_Nature_400_532

ESTHER : Bowman_1999_Nature_400_532

PubMedSearch : Bowman_1999_Nature_400_532

PubMedID: 10448855

Gene_locus related to this paper: plafa-PFC0950C

Title : Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence - Cole_1998_Nature_393_537

Author(s) : Cole ST , Brosch R , Parkhill J , Garnier T , Churcher C , Harris D , Gordon SV , Eiglmeier K , Gas S , Barry CE, 3rd , Tekaia F , Badcock K , Basham D , Brown D , Chillingworth T , Connor R , Davies R , Devlin K , Feltwell T , Gentles S , Hamlin N , Holroyd S , Hornsby T , Jagels K , Krogh A , McLean J , Moule S , Murphy L , Oliver K , Osborne J , Quail MA , Rajandream MA , Rogers J , Rutter S , Seeger K , Skelton J , Squares R , Squares S , Sulston JE , Taylor K , Whitehead S , Barrell BG

Ref : Nature , 393 :537 , 1998

Abstract : Cole_1998_Nature_393_537

ESTHER : Cole_1998_Nature_393_537

PubMedSearch : Cole_1998_Nature_393_537

PubMedID: 9634230

Gene_locus related to this paper: myctu-a85a , myctu-a85b , myctu-a85c , myctu-bpoC , myctu-cut3 , myctu-cutas1 , myctu-cutas2 , myctu-d5yk66 , myctu-ephA , myctu-ephB , myctu-ephc , myctu-ephd , myctu-ephE , myctu-ephF , myctu-hpx , myctu-linb , myctu-lipG , myctu-lipJ , myctu-LIPS , myctu-lipv , myctu-LPQC , myctu-LPQP , myctu-MBTB , myctu-metx , myctu-mpt51 , myctu-MT1628 , myctu-MT3441 , myctu-p71654 , myctu-p95011 , myctu-PKS6 , myctu-PKS13 , myctu-ppe42 , myctu-ppe63 , myctu-Rv1430 , myctu-RV0045C , myctu-Rv0077c , myctu-Rv0151c , myctu-Rv0152c , myctu-Rv0159c , myctu-Rv0160c , myctu-rv0183 , myctu-Rv0217c , myctu-Rv0220 , myctu-Rv0272c , myctu-RV0293C , myctu-RV0421C , myctu-RV0457C , myctu-RV0519C , myctu-RV0774C , myctu-RV0782 , myctu-RV0840C , myctu-Rv1069c , myctu-Rv1076 , myctu-RV1123C , myctu-Rv1184c , myctu-Rv1190 , myctu-Rv1191 , myctu-RV1192 , myctu-RV1215C , myctu-Rv1399c , myctu-Rv1400c , myctu-Rv1426c , myctu-RV1639C , myctu-RV1683 , myctu-RV1758 , myctu-Rv1800 , myctu-Rv1833c , myctu-RV2054 , myctu-RV2296 , myctu-Rv2385 , myctu-Rv2485c , myctu-RV2627C , myctu-RV2672 , myctu-RV2695 , myctu-RV2765 , myctu-RV2800 , myctu-RV2854 , myctu-Rv2970c , myctu-Rv3084 , myctu-Rv3097c , myctu-rv3177 , myctu-Rv3312c , myctu-RV3452 , myctu-RV3473C , myctu-Rv3487c , myctu-Rv3569c , myctu-Rv3591c , myctu-RV3724 , myctu-Rv3802c , myctu-Rv3822 , myctu-y0571 , myctu-y963 , myctu-Y1834 , myctu-y1835 , myctu-y2079 , myctu-Y2307 , myctu-yc88 , myctu-ym23 , myctu-ym24 , myctu-YR15 , myctu-yt28

Report for Quail MA

General

References (77)

Report for Quail MA

General

References (77)

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