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Author Report for: Thomson NR

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    Title: Genome evolution and plasticity of Serratia marcescens, an important multidrug-resistant nosocomial pathogen
    Iguchi A, Nagaya Y, Pradel E, Ooka T, Ogura Y, Katsura K, Kurokawa K, Oshima K, Hattori M and Hayashi T <6 more author(s)>
    Ref: Genome Biol Evol, 6:2096, 2014 : PubMed

            

    Title: Parallel independent evolution of pathogenicity within the genus Yersinia
    Reuter S, Connor TR, Barquist L, Walker D, Feltwell T, Harris SR, Fookes M, Hall ME, Petty NK and Thomson NR <23 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 111:6768, 2014 : PubMed

            

    Title: Genomic characterisation of invasive non-typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans isolates from Malawi
    Bronowski C, Fookes MC, Gilderthorp R, Ashelford KE, Harris SR, Phiri A, Hall N, Gordon MA, Wain J and Winstanley C <3 more author(s)>
    Ref: PLoS Negl Trop Dis, 7:e2557, 2013 : PubMed

            

    Title: Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms
    Dziva F, Hauser H, Connor TR, van Diemen PM, Prescott G, Langridge GC, Eckert S, Chaudhuri RR, Ewers C and Stevens MP <7 more author(s)>
    Ref: Infect Immun, 81:838, 2013 : PubMed

            

    Title: Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts
    Mather AE, Reid SW, Maskell DJ, Parkhill J, Fookes MC, Harris SR, Brown DJ, Coia JE, Mulvey MR and Thomson NR <11 more author(s)>
    Ref: Science, 341:1514, 2013 : PubMed

            

    Title: The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
    Kroger C, Dillon SC, Cameron AD, Papenfort K, Sivasankaran SK, Hokamp K, Chao Y, Sittka A, Hebrard M and Hinton JC <11 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 109:E1277, 2012 : PubMed

            

    Title: Salmonella bongori provides insights into the evolution of the Salmonellae
    Fookes M, Schroeder GN, Langridge GC, Blondel CJ, Mammina C, Connor TR, Seth-Smith H, Vernikos GS, Robinson KS and Thomson NR <15 more author(s)>
    Ref: PLoS Pathog, 7:e1002191, 2011 : PubMed

            

    Title: Genome sequences of Salmonella enterica serovar typhimurium, Choleraesuis, Dublin, and Gallinarum strains of well- defined virulence in food-producing animals
    Richardson EJ, Limaye B, Inamdar H, Datta A, Manjari KS, Pullinger GD, Thomson NR, Joshi RR, Watson M, Stevens MP
    Ref: Journal of Bacteriology, 193:3162, 2011 : PubMed

            

    Title: Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042
    Chaudhuri RR, Sebaihia M, Hobman JL, Webber MA, Leyton DL, Goldberg MD, Cunningham AF, Scott-Tucker A, Ferguson PR and Henderson IR <10 more author(s)>
    Ref: PLoS ONE, 5:e8801, 2010 : PubMed

            

    Title: A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407
    Crossman LC, Chaudhuri RR, Beatson SA, Wells TJ, Desvaux M, Cunningham AF, Petty NK, Mahon V, Brinkley C and Henderson IR <10 more author(s)>
    Ref: Journal of Bacteriology, 192:5822, 2010 : PubMed

            

    Title: The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli
    Petty NK, Bulgin R, Crepin VF, Cerdeno-Tarraga AM, Schroeder GN, Quail MA, Lennard N, Corton C, Barron A and Thomson NR <5 more author(s)>
    Ref: Journal of Bacteriology, 192:525, 2010 : PubMed

            

    Title: Legionella pneumophila strain 130b possesses a unique combination of type IV secretion systems and novel Dot/Icm secretion system effector proteins
    Schroeder GN, Petty NK, Mousnier A, Harding CR, Vogrin AJ, Wee B, Fry NK, Harrison TG, Newton HJ and Frankel G <4 more author(s)>
    Ref: Journal of Bacteriology, 192:6001, 2010 : PubMed

            

    Title: The Swedish new variant of Chlamydia trachomatis: genome sequence, morphology, cell tropism and phenotypic characterization
    Unemo M, Seth-Smith HM, Cutcliffe LT, Skilton RJ, Barlow D, Goulding D, Persson K, Harris SR, Kelly A and Clarke IN <4 more author(s)>
    Ref: Microbiology, 156:1394, 2010 : PubMed

            

    Title: The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients
    Holden MT, Seth-Smith HM, Crossman LC, Sebaihia M, Bentley SD, Cerdeno-Tarraga AM, Thomson NR, Bason N, Quail MA and Parkhill J <22 more author(s)>
    Ref: Journal of Bacteriology, 191:261, 2009 : PubMed

            

    Title: Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi
    Holt KE, Thomson NR, Wain J, Langridge GC, Hasan R, Bhutta ZA, Quail MA, Norbertczak H, Walker D and Parkhill J <5 more author(s)>
    Ref: BMC Genomics, 10:36, 2009 : PubMed

            

    Title: Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69
    Iguchi A, Thomson NR, Ogura Y, Saunders D, Ooka T, Henderson IR, Harris D, Asadulghani M, Kurokawa K and Frankel G <7 more author(s)>
    Ref: Journal of Bacteriology, 191:347, 2009 : PubMed

            

    Title: Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype
    Kingsley RA, Msefula CL, Thomson NR, Kariuki S, Holt KE, Gordon MA, Harris D, Clarke L, Whitehead S and Dougan G <8 more author(s)>
    Ref: Genome Res, 19:2279, 2009 : PubMed

            

    Title: Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain
    Seth-Smith HM, Harris SR, Persson K, Marsh P, Barron A, Bignell A, Bjartling C, Clark L, Cutcliffe LT and Clarke IN <10 more author(s)>
    Ref: BMC Genomics, 10:239, 2009 : PubMed

            

    Title: Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
    Silby MW, Cerdeno-Tarraga AM, Vernikos GS, Giddens SR, Jackson RW, Preston GM, Zhang XX, Moon CD, Gehrig SM and Thomson NR <24 more author(s)>
    Ref: Genome Biol, 10:R51, 2009 : PubMed

            

    Title: Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa
    Winstanley C, Langille MG, Fothergill JL, Kukavica-Ibrulj I, Paradis-Bleau C, Sanschagrin F, Thomson NR, Winsor GL, Quail MA and Levesque RC <9 more author(s)>
    Ref: Genome Res, 19:12, 2009 : PubMed

            

    Title: The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants
    Crossman LC, Gould VC, Dow JM, Vernikos GS, Okazaki A, Sebaihia M, Saunders D, Arrowsmith C, Carver T and Avison MB <15 more author(s)>
    Ref: Genome Biol, 9:R74, 2008 : PubMed

            

    Title: The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay
    Hjerde E, Lorentzen MS, Holden MT, Seeger K, Paulsen S, Bason N, Churcher C, Harris D, Norbertczak H and Thomson NR <5 more author(s)>
    Ref: BMC Genomics, 9:616, 2008 : PubMed

            

    Title: Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility
    Pearson MM, Sebaihia M, Churcher C, Quail MA, Seshasayee AS, Luscombe NM, Abdellah Z, Arrosmith C, Atkin B and Mobley HL <12 more author(s)>
    Ref: Journal of Bacteriology, 190:4027, 2008 : PubMed

            

    Title: The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
    Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, Gajer P, Crabtree J, Sebaihia M, Thomson NR and Ravel J <3 more author(s)>
    Ref: Journal of Bacteriology, 190:6881, 2008 : PubMed

            

    Title: Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways
    Thomson NR, Clayton DJ, Windhorst D, Vernikos G, Davidson S, Churcher C, Quail MA, Stevens M, Jones MA and Parkhill J <28 more author(s)>
    Ref: Genome Res, 18:1624, 2008 : PubMed

            

    Title: Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates
    Thomson NR, Holden MT, Carder C, Lennard N, Lockey SJ, Marsh P, Skipp P, O'Connor CD, Goodhead I and Clarke IN <7 more author(s)>
    Ref: Genome Res, 18:161, 2008 : PubMed

            

    Title: Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes
    Sebaihia M, Peck MW, Minton NP, Thomson NR, Holden MT, Mitchell WJ, Carter AT, Bentley SD, Mason DR and Parkhill J <24 more author(s)>
    Ref: Genome Res, 17:1082, 2007 : PubMed

            

    Title: Escherichia coli K-12: a cooperatively developed annotation snapshot--2005
    Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM and Wanner BL <9 more author(s)>
    Ref: Nucleic Acids Research, 34:1, 2006 : PubMed

            

    Title: Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction
    Sebaihia M, Preston A, Maskell DJ, Kuzmiak H, Connell TD, King ND, Orndorff PE, Miyamoto DM, Thomson NR and Temple LM <10 more author(s)>
    Ref: Journal of Bacteriology, 188:6002, 2006 : PubMed

            

    Title: The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome
    Sebaihia M, Wren BW, Mullany P, Fairweather NF, Minton N, Stabler R, Thomson NR, Roberts AP, Cerdeno-Tarraga AM and Parkhill J <29 more author(s)>
    Ref: Nat Genet, 38:779, 2006 : PubMed

            

    Title: The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081
    Thomson NR, Howard S, Wren BW, Holden MT, Crossman L, Challis GL, Churcher C, Mungall K, Brooks K and Prentice MB <12 more author(s)>
    Ref: PLoS Genet, 2:e206, 2006 : PubMed

            

    Title: The genome of Rhizobium leguminosarum has recognizable core and accessory components
    Young JP, Crossman LC, Johnston AW, Thomson NR, Ghazoui ZF, Hull KH, Wexler M, Curson AR, Todd JD and Parkhill J <22 more author(s)>
    Ref: Genome Biol, 7:R34, 2006 : PubMed

            

    Title: The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number
    Collins NE, Liebenberg J, de Villiers EP, Brayton KA, Louw E, Pretorius A, Faber FE, van Heerden H, Josemans A and Allsopp BA <12 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 102:838, 2005 : PubMed

            

    Title: The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation
    Thomson NR, Yeats C, Bell K, Holden MT, Bentley SD, Livingstone M, Cerdeno-Tarraga AM, Harris B, Doggett J and Longbottom D <10 more author(s)>
    Ref: Genome Res, 15:629, 2005 : PubMed

            

    Title: Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors
    Bell KS, Sebaihia M, Pritchard L, Holden MT, Hyman LJ, Holeva MC, Thomson NR, Bentley SD, Churcher LJ and Toth IK <22 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 101:11105, 2004 : PubMed

            

    Title: Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei
    Holden MT, Titball RW, Peacock SJ, Cerdeno-Tarraga AM, Atkins T, Crossman LC, Pitt T, Churcher C, Mungall K and Parkhill J <38 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 101:14240, 2004 : PubMed

            

    Title: The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129
    Cerdeno-Tarraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, Besra GS, Churcher C, James KD and Parkhill J <16 more author(s)>
    Ref: Nucleic Acids Research, 31:6516, 2003 : PubMed

            

    Title: Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)
    Bentley SD, Chater KF, Cerdeno-Tarraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H and Hopwood DA <33 more author(s)>
    Ref: Nature, 417:141, 2002 : PubMed

            

    Title: Massive gene decay in the leprosy bacillus
    Cole ST, Eiglmeier K, Parkhill J, James KD, Thomson NR, Wheeler PR, Honore N, Garnier T, Churcher C and Barrell BG <34 more author(s)>
    Ref: Nature, 409:1007, 2001 : PubMed

            

    Title: Genome sequence of Yersinia pestis, the causative agent of plague.
    Parkhill J, Wren BW, Thomson NR, Titball RW, Holden MTG, Prentice MB, Sebaihia M, James KD, Churcher C and Barrell BG <25 more author(s)>
    Ref: Nature, 413:523, 2001 : PubMed

            

    Title: Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
    Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, Wain J, Churcher C, Mungall KL, Bentley SD and Barrell BG <31 more author(s)>
    Ref: Nature, 413:848, 2001 : PubMed

            


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Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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