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Title: The genome of the model beetle and pest Tribolium castaneumRichards S , Gibbs RA , Weinstock GM , Brown SJ , Denell R , Beeman RW , Gibbs R , Bucher G , Friedrich M and Grossmann D <181 more author(s)> Richards S , Gibbs RA , Weinstock GM , Brown SJ , Denell R , Beeman RW , Gibbs R , Bucher G , Friedrich M , Grimmelikhuijzen CJ , Klingler M , Lorenzen M , Roth S , Schroder R , Tautz D , Zdobnov EM , Muzny D , Attaway T , Bell S , Buhay CJ , Chandrabose MN , Chavez D , Clerk-Blankenburg KP , Cree A , Dao M , Davis C , Chacko J , Dinh H , Dugan-Rocha S , Fowler G , Garner TT , Garnes J , Gnirke A , Hawes A , Hernandez J , Hines S , Holder M , Hume J , Jhangiani SN , Joshi V , Khan ZM , Jackson L , Kovar C , Kowis A , Lee S , Lewis LR , Margolis J , Morgan M , Nazareth LV , Nguyen N , Okwuonu G , Parker D , Ruiz SJ , Santibanez J , Savard J , Scherer SE , Schneider B , Sodergren E , Vattahil S , Villasana D , White CS , Wright R , Park Y , Lord J , Oppert B , Brown S , Wang L , Weinstock G , Liu Y , Worley K , Elsik CG , Reese JT , Elhaik E , Landan G , Graur D , Arensburger P , Atkinson P , Beidler J , Demuth JP , Drury DW , Du YZ , Fujiwara H , Maselli V , Osanai M , Robertson HM , Tu Z , Wang JJ , Wang S , Song H , Zhang L , Werner D , Stanke M , Morgenstern B , Solovyev V , Kosarev P , Brown G , Chen HC , Ermolaeva O , Hlavina W , Kapustin Y , Kiryutin B , Kitts P , Maglott D , Pruitt K , Sapojnikov V , Souvorov A , Mackey AJ , Waterhouse RM , Wyder S , Kriventseva EV , Kadowaki T , Bork P , Aranda M , Bao R , Beermann A , Berns N , Bolognesi R , Bonneton F , Bopp D , Butts T , Chaumot A , Denell RE , Ferrier DE , Gordon CM , Jindra M , Lan Q , Lattorff HM , Laudet V , von Levetsow C , Liu Z , Lutz R , Lynch JA , da Fonseca RN , Posnien N , Reuter R , Schinko JB , Schmitt C , Schoppmeier M , Shippy TD , Simonnet F , Marques-Souza H , Tomoyasu Y , Trauner J , Van der Zee M , Vervoort M , Wittkopp N , Wimmer EA , Yang X , Jones AK , Sattelle DB , Ebert PR , Nelson D , Scott JG , Muthukrishnan S , Kramer KJ , Arakane Y , Zhu Q , Hogenkamp D , Dixit R , Jiang H , Zou Z , Marshall J , Elpidina E , Vinokurov K , Oppert C , Evans J , Lu Z , Zhao P , Sumathipala N , Altincicek B , Vilcinskas A , Williams M , Hultmark D , Hetru C , Hauser F , Cazzamali G , Williamson M , Li B , Tanaka Y , Predel R , Neupert S , Schachtner J , Verleyen P , Raible F , Walden KK , Angeli S , Foret S , Schuetz S , Maleszka R , Miller SC , Grossmann D (- 181) Ref: Nature, 452 :949, 2008 : PubMed Abstract ESTHER: Richards_2008_Nature_452_949 PubMedSearch: Richards 2008 Nature 452 949 PubMedID: 18362917 Gene_locus related to this paper: trica-ACHE1 ,
trica-ACHE2 ,
trica-d2a0g9 ,
trica-d2a0h0 ,
trica-d2a0w9 ,
trica-d2a0x0 ,
trica-d2a0x1 ,
trica-d2a0x3 ,
trica-d2a0x4.1 ,
trica-d2a0x4.2 ,
trica-d2a0x6 ,
trica-d2a2b8 ,
trica-d2a2h1 ,
trica-d2a3c3 ,
trica-d2a3g9 ,
trica-d2a5y5 ,
trica-d2a309 ,
trica-d2a514 ,
trica-d2a515 ,
trica-d2a516 ,
trica-d2a577 ,
trica-d2a578 ,
trica-d6w6x8 ,
trica-d6w7f9 ,
trica-d6w7h2 ,
trica-d6w8e7 ,
trica-d6w9c0 ,
trica-d6w855 ,
trica-d6wac8 ,
trica-d6wan4 ,
trica-d6wd50 ,
trica-d6wd73 ,
trica-d6wd74 ,
trica-A0A139WM97 ,
trica-d6wfu3 ,
trica-d6wgl2 ,
trica-d6wj57 ,
trica-d6wj59 ,
trica-d6wjs3 ,
trica-d6wl31 ,
trica-d6wnv1 ,
trica-d6wpl0 ,
trica-d6wqd6 ,
trica-d6wqr4 ,
trica-d6ws52 ,
trica-d6wsm0 ,
trica-d6wu38 ,
trica-d6wu39 ,
trica-d6wu40 ,
trica-d6wu41 ,
trica-d6wu44 ,
trica-d6wvk5 ,
trica-d6wvz7 ,
trica-d6wwu9 ,
trica-d6wwv0 ,
trica-d6wxz0 ,
trica-d6wyy1 ,
trica-d6wyy2 ,
trica-d6x0z2 ,
trica-d6x0z5 ,
trica-d6x0z6 ,
trica-d6x4b2 ,
trica-d6x4e8 ,
trica-d6x4e9 ,
trica-d6x197 ,
trica-d7eip7 ,
trica-d7eld3 ,
trica-d7us45 ,
trica-q5wm43 ,
trica-q5zex9 ,
trica-d6wie5 ,
trica-d6w7t0 ,
trica-d6x4h0 ,
trica-d6x4h1 ,
trica-a0a139wae8 ,
trica-a0a139wc96 ,
trica-d6x325 ,
trica-d2a4s2 ,
trica-d6wvw8 Abstract
Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural products. We describe its genome sequence here. This omnivorous beetle has evolved the ability to interact with a diverse chemical environment, as shown by large expansions in odorant and gustatory receptors, as well as P450 and other detoxification enzymes. Development in Tribolium is more representative of other insects than is Drosophila, a fact reflected in gene content and function. For example, Tribolium has retained more ancestral genes involved in cell-cell communication than Drosophila, some being expressed in the growth zone crucial for axial elongation in short-germ development. Systemic RNA interference in T. castaneum functions differently from that in Caenorhabditis elegans, but nevertheless offers similar power for the elucidation of gene function and identification of targets for selective insect control.
Title: Evolutionary and biomedical insights from the rhesus macaque genomeGibbs RA , Rogers J , Katze MG , Bumgarner R , Weinstock GM , Mardis ER , Remington KA , Strausberg RL , Venter JC and Zwieg AS <166 more author(s)> Gibbs RA , Rogers J , Katze MG , Bumgarner R , Weinstock GM , Mardis ER , Remington KA , Strausberg RL , Venter JC , Wilson RK , Batzer MA , Bustamante CD , Eichler EE , Hahn MW , Hardison RC , Makova KD , Miller W , Milosavljevic A , Palermo RE , Siepel A , Sikela JM , Attaway T , Bell S , Bernard KE , Buhay CJ , Chandrabose MN , Dao M , Davis C , Delehaunty KD , Ding Y , Dinh HH , Dugan-Rocha S , Fulton LA , Gabisi RA , Garner TT , Godfrey J , Hawes AC , Hernandez J , Hines S , Holder M , Hume J , Jhangiani SN , Joshi V , Khan ZM , Kirkness EF , Cree A , Fowler RG , Lee S , Lewis LR , Li Z , Liu YS , Moore SM , Muzny D , Nazareth LV , Ngo DN , Okwuonu GO , Pai G , Parker D , Paul HA , Pfannkoch C , Pohl CS , Rogers YH , Ruiz SJ , Sabo A , Santibanez J , Schneider BW , Smith SM , Sodergren E , Svatek AF , Utterback TR , Vattathil S , Warren W , White CS , Chinwalla AT , Feng Y , Halpern AL , Hillier LW , Huang X , Minx P , Nelson JO , Pepin KH , Qin X , Sutton GG , Venter E , Walenz BP , Wallis JW , Worley KC , Yang SP , Jones SM , Marra MA , Rocchi M , Schein JE , Baertsch R , Clarke L , Csuros M , Glasscock J , Harris RA , Havlak P , Jackson AR , Jiang H , Liu Y , Messina DN , Shen Y , Song HX , Wylie T , Zhang L , Birney E , Han K , Konkel MK , Lee J , Smit AF , Ullmer B , Wang H , Xing J , Burhans R , Cheng Z , Karro JE , Ma J , Raney B , She X , Cox MJ , Demuth JP , Dumas LJ , Han SG , Hopkins J , Karimpour-Fard A , Kim YH , Pollack JR , Vinar T , Addo-Quaye C , Degenhardt J , Denby A , Hubisz MJ , Indap A , Kosiol C , Lahn BT , Lawson HA , Marklein A , Nielsen R , Vallender EJ , Clark AG , Ferguson B , Hernandez RD , Hirani K , Kehrer-Sawatzki H , Kolb J , Patil S , Pu LL , Ren Y , Smith DG , Wheeler DA , Schenck I , Ball EV , Chen R , Cooper DN , Giardine B , Hsu F , Kent WJ , Lesk A , Nelson DL , O'Brien W E , Prufer K , Stenson PD , Wallace JC , Ke H , Liu XM , Wang P , Xiang AP , Yang F , Barber GP , Haussler D , Karolchik D , Kern AD , Kuhn RM , Smith KE , Zwieg AS (- 166) Ref: Science, 316 :222, 2007 : PubMed Abstract ESTHER: Gibbs_2007_Science_316_222 PubMedSearch: Gibbs 2007 Science 316 222 PubMedID: 17431167 Gene_locus related to this paper: macmu-3neur ,
macmu-ACHE ,
macmu-BCHE ,
macmu-f6rul6 ,
macmu-f6sz31 ,
macmu-f6the6 ,
macmu-f6unj2 ,
macmu-f6wtx1 ,
macmu-f6zkq5 ,
macmu-f7aa58 ,
macmu-f7ai42 ,
macmu-f7aim4 ,
macmu-f7buk8 ,
macmu-f7cfi8 ,
macmu-f7cnr2 ,
macmu-f7cu68 ,
macmu-f7flv1 ,
macmu-f7ggk1 ,
macmu-f7hir7 ,
macmu-g7n054 ,
macmu-KANSL3 ,
macmu-TEX30 ,
macmu-Y4neur ,
macmu-g7n4x3 ,
macmu-i2cy02 ,
macmu-f7ba84 ,
macmu-CES2 ,
macmu-h9er02 ,
macmu-a0a1d5rbr3 ,
macmu-a0a1d5q4k5 ,
macmu-g7mxj6 ,
macmu-f7dn71 ,
macmu-f7hkw9 ,
macmu-f7hm08 ,
macmu-g7mke4 ,
macmu-a0a1d5rh04 ,
macmu-h9fud6 ,
macmu-f6qwx1 ,
macmu-f7h4t2 ,
macmu-h9zaw9 ,
macmu-f7h550 ,
macmu-a0a1d5q9w1 ,
macmu-f7gkb9 ,
macmu-f7hp78 ,
macmu-a0a1d5qvu5 Abstract
The rhesus macaque (Macaca mulatta) is an abundant primate species that diverged from the ancestors of Homo sapiens about 25 million years ago. Because they are genetically and physiologically similar to humans, rhesus monkeys are the most widely used nonhuman primate in basic and applied biomedical research. We determined the genome sequence of an Indian-origin Macaca mulatta female and compared the data with chimpanzees and humans to reveal the structure of ancestral primate genomes and to identify evidence for positive selection and lineage-specific expansions and contractions of gene families. A comparison of sequences from individual animals was used to investigate their underlying genetic diversity. The complete description of the macaque genome blueprint enhances the utility of this animal model for biomedical research and improves our understanding of the basic biology of the species.
