Lu M, Schneider D, Daniel R (2022)
Metagenomic Screening for Lipolytic Genes Reveals an Ecology-Clustered Distribution Pattern
Front Microbiol 13: 851969

Lu M, Daniel R (2021)
A Novel Carboxylesterase Derived from a Compost Metagenome Exhibiting High Stability and Activity towards High Salinity
Genes (Basel) 12:

Castillo Villamizar GA, Nacke H, Boehning M, Herz K, Daniel R (2019)
Functional Metagenomics Reveals an Overlooked Diversity and Novel Features of Soil-Derived Bacterial Phosphatases and Phytases
MBio 10:

Lu M, Dukunde A, Daniel R (2019)
Biochemical profiles of two thermostable and organic solvent-tolerant esterases derived from a compost metagenome
Applied Microbiology & Biotechnology 103: 3421

Dukunde A, Schneider D, Lu M, Brady S, Daniel R (2017)
A novel, versatile family IV carboxylesterase exhibits high stability and activity in a broad pH spectrum
Biotechnol Lett 39: 577

Poehlein A, Daniel R, Thurmer A, Bollinger A, Thies S, Katzke N, Jaeger KE (2017)
First Insights into the Genome Sequence of Pseudomonas oleovorans DSM 1045
Genome Announc 5:

Haack FS, Poehlein A, Kroger C, Voigt CA, Piepenbring M, Bode HB, Daniel R, Schafer W, Streit WR (2016)
Molecular Keys to the Janthinobacterium and Duganella spp. Interaction with the Plant Pathogen Fusarium graminearum
Front Microbiol 7: 1668

Voget S, Wemheuer B, Brinkhoff T, Vollmers J, Dietrich S, Giebel HA, Beardsley C, Sardemann C, Bakenhus I, Billerbeck S, Daniel R, Simon M (2015)
Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses
Isme J 9: 371

Voget S, Billerbeck S, Simon M, Daniel R (2015)
Closed Genome Sequence of Octadecabacter temperatus SB1, the First Mesophilic Species of the Genus Octadecabacter
Genome Announc 3:

Djukic M, Brzuszkiewicz E, Funfhaus A, Voss J, Gollnow K, Poppinga L, Liesegang H, Garcia-Gonzalez E, Genersch E, Daniel R (2014)
How to kill the honey bee larva: genomic potential and virulence mechanisms of Paenibacillus larvae
PLoS ONE 9: e90914

Luo Q, Hiessl S, Poehlein A, Daniel R, Steinbuchel A (2014)
Insights into the microbial degradation of rubber and gutta-percha by analysis of the complete genome of Nocardia nova SH22a
Applied Environmental Microbiology 80: 3895

Poehlein A, Freese HM, Daniel R, Simeonova DD (2014)
Draft Genome Sequence of Serratia sp. Strain DD3, Isolated from the Guts of Daphnia magna
Genome Announc 2:

Wubbeler JH, Hiessl S, Schuldes J, Thurmer A, Daniel R, Steinbuchel A (2014)
Unravelling the complete genome sequence of Advenella mimigardefordensis strain DPN7T and novel insights in the catabolism of the xenobiotic polythioester precursor 3,3'-dithiodipropionate
Microbiology 160: 1401

Berlemont R, Spee O, Delsaute M, Lara Y, Schuldes J, Simon C, Power P, Daniel R, Galleni M (2013)
Novel organic solvent-tolerant esterase isolated by metagenomics: insights into the lipase/esterase classification
Rev Argent Microbiol 45: 3

Brzuszkiewicz E, Schulz T, Rydzewski K, Daniel R, Gillmaier N, Dittmann C, Holland G, Schunder E, Lautner M, Eisenreich W, Luck C, Heuner K (2013)
Legionella oakridgensis ATCC 33761 genome sequence and phenotypic characterization reveals its replication capacity in amoebae
Int J Med Microbiol 303: 514

Fraunholz M, Bernhardt J, Schuldes J, Daniel R, Hecker M, Sinha B (2013)
Complete Genome Sequence of Staphylococcus aureus 6850, a Highly Cytotoxic and Clinically Virulent Methicillin-Sensitive Strain with Distant Relatedness to Prototype Strains
Genome Announc 1: e00775

Hornung C, Poehlein A, Haack FS, Schmidt M, Dierking K, Pohlen A, Schulenburg H, Blokesch M, Plener L, Jung K, Bonge A, Krohn-Molt I, Utpatel C, Timmermann G, Spieck E, Pommerening-Roser A, Bode E, Bode HB, Daniel R, Schmeisser C, Streit WR (2013)
The Janthinobacterium sp. HH01 genome encodes a homologue of the V. cholerae CqsA and L. pneumophila LqsA autoinducer synthases
PLoS ONE 8: e55045

Kabisch J, Thurmer A, Hubel T, Popper L, Daniel R, Schweder T (2013)
Characterization and optimization of Bacillus subtilis ATCC 6051 as an expression host
J Biotechnol 163: 97

Poehlein A, Zverlov VV, Daniel R, Schwarz WH, Liebl W (2013)
Complete Genome Sequence of Clostridium stercorarium subsp. stercorarium Strain DSM 8532, a Thermophilic Degrader of Plant Cell Wall Fibers
Genome Announc 1: e0007313

Poehlein A, Deutzmann JS, Daniel R, Simeonova DD (2013)
Draft Genome Sequence of the Methanotrophic Gammaproteobacterium Methyloglobulus morosus DSM 22980 Strain KoM1
Genome Announc 1:

Poehlein A, Daniel R, Simeonova DD (2013)
Draft Genome Sequence of Desulfotignum phosphitoxidans DSM 13687 Strain FiPS-3
Genome Announc 1:

Poehlein A, Gottschalk G, Daniel R (2013)
First Insights into the Genome of the Gram-Negative, Endospore-Forming Organism Sporomusa ovata Strain H1 DSM 2662
Genome Announc 1:

Rachinger M, Volland S, Meinhardt F, Daniel R, Liesegang H (2013)
First Insights into the Completely Annotated Genome Sequence of Bacillus licheniformis Strain 9945A
Genome Announc 1:

Vollmers J, Voget S, Dietrich S, Gollnow K, Smits M, Meyer K, Brinkhoff T, Simon M, Daniel R (2013)
Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin
PLoS ONE 8: e63422

Wiegand S, Rabausch U, Chow J, Daniel R, Streit WR, Liesegang H (2013)
Complete Genome Sequence of Geobacillus sp. Strain GHH01, a Thermophilic Lipase-Secreting Bacterium
Genome Announc 1: e0009213

Brzuszkiewicz E, Waschkowitz T, Wiezer A, Daniel R (2012)
Complete genome sequence of the B12-producing Shimwellia blattae strain DSM 4481, isolated from a cockroach
Journal of Bacteriology 194: 4436

Djukic M, Becker D, Poehlein A, Voget S, Daniel R (2012)
Genome sequence of Paenibacillus alvei DSM 29, a secondary invader during European foulbrood outbreaks
Journal of Bacteriology 194: 6365

Gardebrecht A, Markert S, Sievert SM, Felbeck H, Thurmer A, Albrecht D, Wollherr A, Kabisch J, Le Bris N, Lehmann R, Daniel R, Liesegang H, Hecker M, Schweder T (2012)
Physiological homogeneity among the endosymbionts of Riftia pachyptila and Tevnia jerichonana revealed by proteogenomics
Isme J 6: 766

Hiessl S, Schuldes J, Thurmer A, Halbsguth T, Broker D, Angelov A, Liebl W, Daniel R, Steinbuchel A (2012)
Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2
Applied Environmental Microbiology 78: 2874

Michael GB, Kadlec K, Sweeney MT, Brzuszkiewicz E, Liesegang H, Daniel R, Murray RW, Watts JL, Schwarz S (2012)
ICEPmu1, an integrative conjugative element (ICE) of Pasteurella multocida: structure and transfer
J Antimicrob Chemother 67: 91

Niewerth H, Schuldes J, Parschat K, Kiefer P, Vorholt JA, Daniel R, Fetzner S (2012)
Complete genome sequence and metabolic potential of the quinaldine-degrading bacterium Arthrobacter sp. Rue61a
BMC Genomics 13: 534

Schuldes J, Rodriguez Orbegoso M, Schmeisser C, Krishnan HB, Daniel R, Streit WR (2012)
Complete genome sequence of the broad-host-range strain Sinorhizobium fredii USDA257
Journal of Bacteriology 194: 4483

Spang A, Poehlein A, Offre P, Zumbragel S, Haider S, Rychlik N, Nowka B, Schmeisser C, Lebedeva EV, Rattei T, Bohm C, Schmid M, Galushko A, Hatzenpichler R, Weinmaier T, Daniel R, Schleper C, Spieck E, Streit WR, Wagner M (2012)
The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations
Environ Microbiol 14: 3122

Thole S, Kalhoefer D, Voget S, Berger M, Engelhardt T, Liesegang H, Wollherr A, Kjelleberg S, Daniel R, Simon M, Thomas T, Brinkhoff T (2012)
Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life
Isme J 6: 2229

Brzuszkiewicz E, Weiner J, Wollherr A, Thurmer A, Hupeden J, Lomholt HB, Kilian M, Gottschalk G, Daniel R, Mollenkopf HJ, Meyer TF, Bruggemann H (2011)
Comparative genomics and transcriptomics of Propionibacterium acnes
PLoS ONE 6: e21581

Djukic M, Poehlein A, Thurmer A, Daniel R (2011)
Genome sequence of Brevibacillus laterosporus LMG 15441, a pathogen of invertebrates
Journal of Bacteriology 193: 5535

Kalhoefer D, Thole S, Voget S, Lehmann R, Liesegang H, Wollher A, Daniel R, Simon M, Brinkhoff T (2011)
Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis
BMC Genomics 12: 324

Nacke H, Will C, Herzog S, Nowka B, Engelhaupt M, Daniel R (2011)
Identification of novel lipolytic genes and gene families by screening of metagenomic libraries derived from soil samples of the German Biodiversity Exploratories
FEMS Microbiol Ecol 78: 188

Poehlein A, Kusian B, Friedrich B, Daniel R, Bowien B (2011)
Complete genome sequence of the type strain Cupriavidus necator N-1
Journal of Bacteriology 193: 5017

Rechnitzer H, Brzuszkiewicz E, Strittmatter A, Liesegang H, Lysnyansky I, Daniel R, Gottschalk G, Rottem S (2011)
Genomic features and insights into the biology of Mycoplasma fermentans
Microbiology 157: 760

Volland S, Rachinger M, Strittmatter A, Daniel R, Gottschalk G, Meyer O (2011)
Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5
Journal of Bacteriology 193: 5043

Angelov A, Liebl S, Ballschmiter M, Bomeke M, Lehmann R, Liesegang H, Daniel R, Liebl W (2010)
Genome sequence of the polysaccharide-degrading, thermophilic anaerobe Spirochaeta thermophila DSM 6192
Journal of Bacteriology 192: 6492

Farnbacher M, Jahns T, Willrodt D, Daniel R, Haas R, Goesmann A, Kurtz S, Rieder G (2010)
Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8
BMC Genomics 11: 335

Wagner-Dobler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, Hahnke S, Han C, Jahn D, Kalhoefer D, Kiss H, Klenk HP, Kyrpides N, Liebl W, Liesegang H, Meincke L, Pati A, Petersen J, Piekarski T, Pommerenke C, Pradella S, Pukall R, Rabus R, Stackebrandt E, Thole S, Thompson L, Tielen P, Tomasch J, von Jan M, Wanphrut N, Wichels A, Zech H, Simon M (2010)
The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea
Isme J 4: 61

Zdziarski J, Brzuszkiewicz E, Wullt B, Liesegang H, Biran D, Voigt B, Gronberg-Hernandez J, Ragnarsdottir B, Hecker M, Ron EZ, Daniel R, Gottschalk G, Hacker J, Svanborg C, Dobrindt U (2010)
Host imprints on bacterial genomes--rapid, divergent evolution in individual patients
PLoS Pathog 6: e1001078

Streit WR, Daniel R, Jaeger KE (2004)
Prospecting for biocatalysts and drugs in the genomes of non-cultured microorganisms
Curr Opin Biotechnol 15: 285

Knietsch A, Waschkowitz T, Bowien S, Henne A, Daniel R (2003)
Construction and screening of metagenomic libraries derived from enrichment cultures: generation of a gene bank for genes conferring alcohol oxidoreductase activity on Escherichia coli
Applied Environmental Microbiology 69: 1408

Knietsch A, Waschkowitz T, Bowien S, Henne A, Daniel R (2003)
Metagenomes of complex microbial consortia derived from different soils as sources for novel genes conferring formation of carbonyls from short-chain polyols on Escherichia coli
J Molecular Microbiology Biotechnol 5: 46

Henne A, Schmitz RA, Bomeke M, Gottschalk G, Daniel R (2000)
Screening of environmental DNA libraries for the presence of genes conferring lipolytic activity on Escherichia coli
Applied Environmental Microbiology 66: 3113