Yee L, Hosoyama A, Ohji S, Tsuchikane K, Shimodaira J, Yamazoe A, Fujita N, Suzuki-Minakuchi C, Nojiri H (2014) <br />Complete Genome Sequence of a Dimethyl Sulfide-Utilizing Bacterium, Acinetobacter guillouiae Strain 20B (NBRC 110550)<br /><i>Genome Announc</i> <b>2</b>: <br /><br />Shintani M, Hosoyama A, Ohji S, Tsuchikane K, Takarada H, Yamazoe A, Fujita N, Nojiri H (2013) <br />Complete Genome Sequence of the Carbazole Degrader Pseudomonas resinovorans Strain CA10 (NBRC 106553)<br /><i>Genome Announc</i> <b>1</b>: e00488<br /><br />Shintani M, Takahashi Y, Tokumaru H, Kadota K, Hara H, Miyakoshi M, Naito K, Yamane H, Nishida H, Nojiri H (2010) <br />Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1<br /><i>Environ Microbiol</i> <b>12</b>: 1413<br /><br />Yun CS, Suzuki C, Naito K, Takeda T, Takahashi Y, Sai F, Terabayashi T, Miyakoshi M, Shintani M, Nishida H, Yamane H, Nojiri H (2010) <br />Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function<br /><i>Journal of Bacteriology</i> <b>192</b>: 4720<br /><br />Miyakoshi M, Nishida H, Shintani M, Yamane H, Nojiri H (2009) <br />High-resolution mapping of plasmid transcriptomes in different host bacteria<br /><i>BMC Genomics</i> <b>10</b>: 12<br /><br />Takahashi Y, Shintani M, Li L, Yamane H, Nojiri H (2009) <br />Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway<br /><i>Applied Environmental Microbiology</i> <b>75</b>: 3920<br /><br />Takahashi Y, Shintani M, Yamane H, Nojiri H (2009) <br />The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids<br /><i>Biosci Biotechnol Biochem</i> <b>73</b>: 744<br /><br />Shintani M, Urata M, Inoue K, Eto K, Habe H, Omori T, Yamane H, Nojiri H (2007) <br />The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole<br /><i>Journal of Bacteriology</i> <b>189</b>: 2007<br /><br />Inoue K, Habe H, Yamane H, Nojiri H (2006) <br />Characterization of novel carbazole catabolism genes from gram-positive carbazole degrader Nocardioides aromaticivorans IC177<br /><i>Applied Environmental Microbiology</i> <b>72</b>: 3321<br /><br />Jun SY, Fushinobu S, Nojiri H, Omori T, Shoun H, Wakagi T (2006) <br />Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01<br /><i>Biochimica & Biophysica Acta</i> <b>1764</b>: 1159<br /><br />Urata M, Uchimura H, Noguchi H, Sakaguchi T, Takemura T, Eto K, Habe H, Omori T, Yamane H, Nojiri H (2006) <br />Plasmid pCAR3 contains multiple gene sets involved in the conversion of carbazole to anthranilate<br /><i>Applied Environmental Microbiology</i> <b>72</b>: 3198<br /><br />Fushinobu S, Jun SY, Hidaka M, Nojiri H, Yamane H, Shoun H, Omori T, Wakagi T (2005) <br />A series of crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with various cleavage products<br /><i>Biosci Biotechnol Biochem</i> <b>69</b>: 491<br /><br />Habe H, Chung JS, Ishida A, Kasuga K, Ide K, Takemura T, Nojiri H, Yamane H, Omori T (2005) <br />The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria<br /><i>Microbiology</i> <b>151</b>: 3713<br /><br />Inoue K, Habe H, Yamane H, Omori T, Nojiri H (2005) <br />Diversity of carbazole-degrading bacteria having the car gene cluster: isolation of a novel gram-positive carbazole-degrading bacterium<br /><i>FEMS Microbiology Letters</i> <b>245</b>: 145<br /><br />Shintani M, Habe H, Tsuda M, Omori T, Yamane H, Nojiri H (2005) <br />Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains<br /><i>Biotechnol Lett</i> <b>27</b>: 1847<br /><br />Shintani M, Yoshida T, Habe H, Omori T, Nojiri H (2005) <br />Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteria<br /><i>Applied Microbiology & Biotechnology</i> <b>67</b>: 370<br /><br />Takagi T, Habe H, Yoshida T, Yamane H, Omori T, Nojiri H (2005) <br />Characterization of [3Fe-4S] ferredoxin DbfA3, which functions in the angular dioxygenase system of Terrabacter sp. strain DBF63<br /><i>Applied Microbiology & Biotechnology</i> <b>68</b>: 336<br /><br />Uchida E, Ouchi T, Suzuki Y, Yoshida T, Habe H, Yamaguchi I, Omori T, Nojiri H (2005) <br />Secretion of bacterial xenobiotic-degrading enzymes from transgenic plants by an apoplastic expressional system: an applicability for phytoremediation<br /><i>Environ Sci Technol</i> <b>39</b>: 7671<br /><br />Habe H, Chung JS, Kato H, Ayabe Y, Kasuga K, Yoshida T, Nojiri H, Yamane H, Omori T (2004) <br />Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63<br /><i>Journal of Bacteriology</i> <b>186</b>: 5938<br /><br />Inoue K, Widada J, Nakai S, Endoh T, Urata M, Ashikawa Y, Shintani M, Saiki Y, Yoshida T, Habe H, Omori T, Nojiri H (2004) <br />Divergent structures of carbazole degradative car operons isolated from gram-negative bacteria<br /><i>Biosci Biotechnol Biochem</i> <b>68</b>: 1467<br /><br />Jikumaru Y, Asami T, Seto H, Yoshida S, Yokoyama T, Obara N, Hasegawa M, Kodama O, Nishiyama M, Okada K, Nojiri H, Yamane H (2004) <br />Preparation and biological activity of molecular probes to identify and analyze jasmonic acid-binding proteins<br /><i>Biosci Biotechnol Biochem</i> <b>68</b>: 1461<br /><br />Noumura T, Habe H, Widada J, Chung JS, Yoshida T, Nojiri H, Omori T (2004) <br />Genetic characterization of the dibenzofuran-degrading Actinobacteria carrying the dbfA1A2 gene homologues isolated from activated sludge<br /><i>FEMS Microbiology Letters</i> <b>239</b>: 147<br /><br />Habe H, Morii K, Fushinobu S, Nam JW, Ayabe Y, Yoshida T, Wakagi T, Yamane H, Nojiri H, Omori T (2003) <br />Crystal structure of a histidine-tagged serine hydrolase involved in the carbazole degradation (CarC enzyme)<br /><i>Biochemical & Biophysical Research Communications</i> <b>303</b>: 631<br /><br />Habe H, Miyakoshi M, Chung J, Kasuga K, Yoshida T, Nojiri H, Omori T (2003) <br />Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63<br /><i>Applied Microbiology & Biotechnology</i> <b>61</b>: 44<br /><br />Maeda K, Nojiri H, Shintani M, Yoshida T, Habe H, Omori T (2003) <br />Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676<br /><i>Journal of Molecular Biology</i> <b>326</b>: 21<br /><br />Nojiri H, Taira H, Iwata K, Morii K, Nam JW, Yoshida T, Habe H, Nakamura S, Shimizu K, Yamane H, Omori T (2003) <br />Purification and characterization of meta-cleavage compound hydrolase from a carbazole degrader Pseudomonas resinovorans strain CA10<br /><i>Biosci Biotechnol Biochem</i> <b>67</b>: 36<br /><br />Pinyakong O, Habe H, Yoshida T, Nojiri H, Omori T (2003) <br />Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2<br /><i>Biochemical & Biophysical Research Communications</i> <b>301</b>: 350<br /><br />Fushinobu S, Saku T, Hidaka M, Jun SY, Nojiri H, Yamane H, Shoun H, Omori T, Wakagi T (2002) <br />Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products<br /><i>Protein Science</i> <b>11</b>: 2184<br /><br />Habe H, Ashikawa Y, Saiki Y, Yoshida T, Nojiri H, Omori T (2002) <br />Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo-p-dioxins in soil<br /><i>FEMS Microbiology Letters</i> <b>211</b>: 43<br /><br />Nojiri H, Maeda K, Sekiguchi H, Urata M, Shintani M, Yoshida T, Habe H, Omori T (2002) <br />Organization and transcriptional characterization of catechol degradation genes involved in carbazole degradation by Pseudomonas resinovorans strain CA10<br /><i>Biosci Biotechnol Biochem</i> <b>66</b>: 897<br /><br />Widada J, Nojiri H, Yoshida T, Habe H, Omori T (2002) <br />Enhanced degradation of carbazole and 2,3-dichlorodibenzo-p-dioxin in soils by Pseudomonas resinovorans strain CA10<br /><i>Chemosphere</i> <b>49</b>: 485<br /><br />Kasuga K, Habe H, Chung JS, Yoshida T, Nojiri H, Yamane H, Omori T (2001) <br />Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63<br /><i>Biochemical & Biophysical Research Communications</i> <b>283</b>: 195<br /><br />Nojiri H, Habe H, Omori T (2001) <br />Bacterial degradation of aromatic compounds via angular dioxygenation<br /><i>J Gen Appl Microbiol</i> <b>47</b>: 279<br /><br />Nojiri H, Sekiguchi H, Maeda K, Urata M, Nakai S, Yoshida T, Habe H, Omori T (2001) <br />Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10<br /><i>Journal of Bacteriology</i> <b>183</b>: 3663<br /><br />Kasuga K, Nojiri H, Yamane H, Kodama T, Omori T (1997) <br />Cloning and characterization of genes involved in the degradation of dibenzofuran by Terrabacter sp. strain DBF63.<br /><i>J Ferment Bioeng</i> <b>84</b>: 387<br /><br />Sato SI, Ouchiyama N, Kimura T, Nojiri H, Yamane H, Omori T (1997) <br />Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase<br /><i>Journal of Bacteriology</i> <b>179</b>: 4841<br /><br />Sato SI, Nam JW, Kasuga K, Nojiri H, Yamane H, Omori T (1997) <br />Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10<br /><i>Journal of Bacteriology</i> <b>179</b>: 4850<br /><br />Habe H, Kasuga K, Nojiri H, Yamane H, Omori T (1996) <br />Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01<br /><i>Applied Environmental Microbiology</i> <b>62</b>: 4471<br /><br />