Futagami T, Mori K, Yamashita A, Wada S, Kajiwara Y, Takashita H, Omori T, Takegawa K, Tashiro K, Kuhara S, Goto M (2011)
Genome sequence of the white koji mold Aspergillus kawachii IFO 4308, used for brewing the Japanese distilled spirit shochu
Eukaryot Cell 10: 1586

Nagashima H, Zulkharnain AB, Maeda R, Fuse H, Iwata K, Omori T (2010)
Cloning and nucleotide sequences of carbazole degradation genes from marine bacterium Neptuniibacter sp. strain CAR-SF
Curr Microbiol 61: 50

Maeda R, Nagashima H, Zulkharnain AB, Iwata K, Omori T (2009)
Isolation and characterization of a car gene cluster from the naphthalene, phenanthrene, and carbazole-degrading marine isolate Lysobacter sp. strain OC7
Curr Microbiol 59: 154

Shintani M, Urata M, Inoue K, Eto K, Habe H, Omori T, Yamane H, Nojiri H (2007)
The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole
Journal of Bacteriology 189: 2007

Jun SY, Fushinobu S, Nojiri H, Omori T, Shoun H, Wakagi T (2006)
Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01
Biochimica & Biophysica Acta 1764: 1159

Urata M, Uchimura H, Noguchi H, Sakaguchi T, Takemura T, Eto K, Habe H, Omori T, Yamane H, Nojiri H (2006)
Plasmid pCAR3 contains multiple gene sets involved in the conversion of carbazole to anthranilate
Applied Environmental Microbiology 72: 3198

Fushinobu S, Jun SY, Hidaka M, Nojiri H, Yamane H, Shoun H, Omori T, Wakagi T (2005)
A series of crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with various cleavage products
Biosci Biotechnol Biochem 69: 491

Habe H, Chung JS, Ishida A, Kasuga K, Ide K, Takemura T, Nojiri H, Yamane H, Omori T (2005)
The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria
Microbiology 151: 3713

Inoue K, Habe H, Yamane H, Omori T, Nojiri H (2005)
Diversity of carbazole-degrading bacteria having the car gene cluster: isolation of a novel gram-positive carbazole-degrading bacterium
FEMS Microbiology Letters 245: 145

Shintani M, Habe H, Tsuda M, Omori T, Yamane H, Nojiri H (2005)
Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains
Biotechnol Lett 27: 1847

Shintani M, Yoshida T, Habe H, Omori T, Nojiri H (2005)
Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteria
Applied Microbiology & Biotechnology 67: 370

Takagi T, Habe H, Yoshida T, Yamane H, Omori T, Nojiri H (2005)
Characterization of [3Fe-4S] ferredoxin DbfA3, which functions in the angular dioxygenase system of Terrabacter sp. strain DBF63
Applied Microbiology & Biotechnology 68: 336

Uchida E, Ouchi T, Suzuki Y, Yoshida T, Habe H, Yamaguchi I, Omori T, Nojiri H (2005)
Secretion of bacterial xenobiotic-degrading enzymes from transgenic plants by an apoplastic expressional system: an applicability for phytoremediation
Environ Sci Technol 39: 7671

Habe H, Chung JS, Kato H, Ayabe Y, Kasuga K, Yoshida T, Nojiri H, Yamane H, Omori T (2004)
Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63
Journal of Bacteriology 186: 5938

Inoue K, Widada J, Nakai S, Endoh T, Urata M, Ashikawa Y, Shintani M, Saiki Y, Yoshida T, Habe H, Omori T, Nojiri H (2004)
Divergent structures of carbazole degradative car operons isolated from gram-negative bacteria
Biosci Biotechnol Biochem 68: 1467

Noumura T, Habe H, Widada J, Chung JS, Yoshida T, Nojiri H, Omori T (2004)
Genetic characterization of the dibenzofuran-degrading Actinobacteria carrying the dbfA1A2 gene homologues isolated from activated sludge
FEMS Microbiology Letters 239: 147

Habe H, Morii K, Fushinobu S, Nam JW, Ayabe Y, Yoshida T, Wakagi T, Yamane H, Nojiri H, Omori T (2003)
Crystal structure of a histidine-tagged serine hydrolase involved in the carbazole degradation (CarC enzyme)
Biochemical & Biophysical Research Communications 303: 631

Habe H, Miyakoshi M, Chung J, Kasuga K, Yoshida T, Nojiri H, Omori T (2003)
Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63
Applied Microbiology & Biotechnology 61: 44

Maeda K, Nojiri H, Shintani M, Yoshida T, Habe H, Omori T (2003)
Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676
Journal of Molecular Biology 326: 21

Nojiri H, Taira H, Iwata K, Morii K, Nam JW, Yoshida T, Habe H, Nakamura S, Shimizu K, Yamane H, Omori T (2003)
Purification and characterization of meta-cleavage compound hydrolase from a carbazole degrader Pseudomonas resinovorans strain CA10
Biosci Biotechnol Biochem 67: 36

Pinyakong O, Habe H, Yoshida T, Nojiri H, Omori T (2003)
Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2
Biochemical & Biophysical Research Communications 301: 350

Fushinobu S, Saku T, Hidaka M, Jun SY, Nojiri H, Yamane H, Shoun H, Omori T, Wakagi T (2002)
Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products
Protein Science 11: 2184

Habe H, Ashikawa Y, Saiki Y, Yoshida T, Nojiri H, Omori T (2002)
Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo-p-dioxins in soil
FEMS Microbiology Letters 211: 43

Nojiri H, Maeda K, Sekiguchi H, Urata M, Shintani M, Yoshida T, Habe H, Omori T (2002)
Organization and transcriptional characterization of catechol degradation genes involved in carbazole degradation by Pseudomonas resinovorans strain CA10
Biosci Biotechnol Biochem 66: 897

Widada J, Nojiri H, Yoshida T, Habe H, Omori T (2002)
Enhanced degradation of carbazole and 2,3-dichlorodibenzo-p-dioxin in soils by Pseudomonas resinovorans strain CA10
Chemosphere 49: 485

Kasuga K, Habe H, Chung JS, Yoshida T, Nojiri H, Yamane H, Omori T (2001)
Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63
Biochemical & Biophysical Research Communications 283: 195

Nojiri H, Habe H, Omori T (2001)
Bacterial degradation of aromatic compounds via angular dioxygenation
J Gen Appl Microbiol 47: 279

Nojiri H, Sekiguchi H, Maeda K, Urata M, Nakai S, Yoshida T, Habe H, Omori T (2001)
Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10
Journal of Bacteriology 183: 3663

Ouchiyama N, Miyachi S, Omori T (1998)
Cloning and nucleotide sequence of carbazole catabolic genes from Pseudomonas stutzeri strain OM1, isolated from activated sludge
J Gen Appl Microbiol 44: 57

Kasuga K, Nojiri H, Yamane H, Kodama T, Omori T (1997)
Cloning and characterization of genes involved in the degradation of dibenzofuran by Terrabacter sp. strain DBF63.
J Ferment Bioeng 84: 387

Sato SI, Ouchiyama N, Kimura T, Nojiri H, Yamane H, Omori T (1997)
Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase
Journal of Bacteriology 179: 4841

Sato SI, Nam JW, Kasuga K, Nojiri H, Yamane H, Omori T (1997)
Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10
Journal of Bacteriology 179: 4850

Habe H, Kasuga K, Nojiri H, Yamane H, Omori T (1996)
Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01
Applied Environmental Microbiology 62: 4471