Schenkmayerova A, Toul M, Pluskal D, Baatallah R, Gagnot G, Pinto GP, Santana VT, Stuchla M, Neugebauer P, Chaiyen P, Damborsky J, Bednar D, Janin YL, Prokop Z, Marek M (2023)
Catalytic mechanism for Renilla-type luciferases
Nature Catalysis 6: 23
Planas-Iglesias J, Opaleny F, Ulbrich P, Stourac J, Sanusi Z, Pinto GP, Schenkmayerova A, Byska J, Damborsky J, Kozlikova B, Bednar D (2022)
LoopGrafter: a web tool for transplanting dynamical loops for protein engineering
Nucleic Acids Research
Schenkmayerova A, Toul M, Pluskal D, Baatallah R, Gagnot G, Pinto GP, Santana VT, Stuchla M, Neugebauer P, Chaiyen P, Damborsky J, Bednar D, Janin YL, Prokop Z, Marek M (2022)
A catalytic mechanism for Renilla-type bioluminescence
Biorxiv
Schenkmayerova A, Pinto GP, Toul M, Marek M, Hernychova L, Planas-Iglesias J, Daniel Liskova V, Pluskal D, Vasina M, Emond S, Dorr M, Chaloupkova R, Bednar D, Prokop Z, Hollfelder F, Bornscheuer UT, Damborsky J (2021)
Engineering the protein dynamics of an ancestral luciferase
Nat Commun 12: 3616
Kokkonen P, Slanska M, Dockalova V, Pinto GP, Sanchez-Carnerero EM, Damborsky J, Klan P, Prokop Z, Bednar D (2020)
The impact of tunnel mutations on enzymatic catalysis depends on the tunnel-substrate complementarity and the rate-limiting step
Comput Struct Biotechnol J 18: 805
Schenkmayerova A, Pinto GP, Toul M, Marek M, Hernychova L, Planas-Iglesias J, Liskova V, Pluskal D, Vasina M, Emond S, Dorr M, Chaloupkova R, Bednar D, Prokop Z, Hollfelder F, Bornscheuer UT, Damborsky J (2020)
Engineering Protein Dynamics of Ancestral Luciferase
Chemrxiv
Chaloupkova, R, Liskova V, Tool M, Markova K, Sebestova E, Hernychova L, Marek M, Pinto GP, Pluskal D, Waterman J, Prokop Z, Damborsky J (2019)
Light-Emitting Dehalogenases: Reconstruction of Multifunctional Biocatalysts
ACS Catal 9: 4810