Buchholz PCF, Feuerriegel G, Zhang H, Perez-Garcia P, Nover LL, Chow J, Streit WR, Pleiss J (2022)
Plastics degradation by hydrolytic enzymes: The plastics-active enzymes database-PAZy
Proteins 90: 1443

Zhang H, Perez-Garcia P, Dierkes RF, Applegate V, Schumacher J, Chibani CM, Sternagel S, Preuss L, Weigert S, Schmeisser C, Danso D, Pleiss J, Almeida A, Hocker B, Hallam SJ, Schmitz RA, Smits SHJ, Chow J, Streit WR (2021)
The Bacteroidetes Aequorivita sp. and Kaistella jeonii Produce Promiscuous Esterases With PET-Hydrolyzing Activity
Front Microbiol 12: 803896

Buchholz PCF, Zhang H, Perez-Garcia P, Nover LL, Chow J, Streit WR, Pleiss J (2021)
Plastics degradation by hydrolytic enzymes: the Plastics-Active Enzymes Database - PAZy

Carvalho HF, Ferrario V, Pleiss J (2021)
Molecular Mechanism of Methanol Inhibition in CALB-Catalyzed Alcoholysis: Analyzing Molecular Dynamics Simulations by a Markov State Model
J Chem Theory Comput

Pleiss J (2021)
Standardized Data, Scalable Documentation, Sustainable Storage - EnzymeML As A Basis For FAIR Data Management In Biocatalysis
ChemCatChem 13: 3909

Zhang H, Dierkes R, Perez-Garcia P, Weigert S, Sternagel S, Hallam S, Schott T, Juergens K, Vollstedt C, Chibani C, Danso D, Buchholz PCF, Pleiss J, Almeida A, Hocker B, Schmitz R, Chow J, Streit WR (2021)
The abundance of mRNA transcripts of bacteroidetal polyethylene terephthalate (PET) esterase genes may indicate a role in marine plastic degradation

Bauer TL, Buchholz PCF, Pleiss J (2020)
The modular structure of alpha/beta-hydrolases
Febs J 287: 1035

Mangiagalli M, Carvalho H, Natalello A, Ferrario V, Pennati ML, Barbiroli A, Lotti M, Pleiss J, Brocca S (2020)
Diverse effects of aqueous polar co-solvents on Candida antarctica lipase B
Int J Biol Macromol 150: 930

Martinez-Martinez M, Coscolin C, Santiago G, Chow J, Stogios PJ, Bargiela R, Gertler C, Navarro-Fernandez J, Bollinger A, Thies S, Mendez-Garcia C, Popovic A, Brown G, Chernikova TN, Garcia-Moyano A, Bjergah GE, Perez-Garcia P, Hai T, Del Pozo MV, Stokke R, Steen IH, Cui H, Xu X, Nocek BP, Alcaide M, Distaso M, Mesa V, Pelaez AI, Sanchez J, Buchholz PCF, Pleiss J, Fernandez-Guerra A, Glockner FO, Golyshina OV, Yakimov MM, Savchenko A, Jaeger KE, Yakunin AF, Streit WR, Golyshin PN, Guallar V, Ferrer M (2018)
Determinants and prediction of esterase substrate promiscuity patterns
ACS Chemical Biology 13: 225

Benson SP, Pleiss J (2017)
Self-Assembly Nanostructures of Triglyceride-Water Interfaces Determine Functional Conformations of Candida antarctica Lipase B
Langmuir 33: 3151

Buchholz PCF, Vogel C, Reusch W, Pohl M, Rother D, Spiess AC, Pleiss J (2016)
BioCatNet: A Database System for the Integration of Enzyme Sequences and Biocatalytic Experiments
Chembiochem 17: 2093

Kulschewski T, Pleiss J (2016)
Binding of Solvent Molecules to a Protein Surface in Binary Mixtures Follows a Competitive Langmuir Model
Langmuir 32: 8960

Lotti Marina, Pleiss J, Valero F, Ferrer P (2015)
Effects of methanol on lipases: molecular, kinetic and process issues in the production of biodiesel
Biotechnol J 10: 22

Sasso F, Kulschewski T, Secundo F, Lotti Marina, Pleiss J (2015)
The effect of thermodynamic properties of solvent mixtures explains the difference between methanol and ethanol in C.antarctica lipase B catalyzed alcoholysis
J Biotechnol 214: 1

Benson SP, Pleiss J (2014)
Solvent Flux Method (SFM): A Case Study of Water Access to Candida antarctica Lipase B
J Chem Theory Comput 10: 5206

Kulschewski T, Sasso F, Secundo F, Lotti Marina, Pleiss J (2013)
Molecular mechanism of deactivation of C. antarctica lipase B by methanol
J Biotechnol 168: 462

Gruber CC, Pleiss J (2012)
Molecular modeling of lipase binding to a substrate-water interface
Methods Mol Biol 861: 313

Gatti-Lafranconi P, Natalello A, Rehm S, Doglia SM, Pleiss J, Lotti M (2010)
Evolution of stability in a cold-active enzyme elicits specificity relaxation and highlights substrate-related effects on temperature adaptation
Journal of Molecular Biology 395: 155

Juhl PB, Doderer K, Hollmann F, Thum O, Pleiss J (2010)
Engineering of Candida antarctica lipase B for hydrolysis of bulky carboxylic acid esters
J Biotechnol 150: 474

Liu D, Trodler P, Eiben S, Koschorreck K, Muller M, Pleiss J, Maurer SC, Branneby C, Schmid RD, Hauer B (2010)
Rational design of Pseudozyma antarctica lipase B yielding a general esterification catalyst
Chembiochem 11: 789

Rehm S, Trodler P, Pleiss J (2010)
Solvent-induced lid opening in lipases: a molecular dynamics study
Protein Science 19: 2122

Widmann M, Juhl PB, Pleiss J (2010)
Structural classification by the Lipase Engineering Database: a case study of Candida antarctica lipase A
BMC Genomics 11: 123

Branco RJ, Graber M, Denis V, Pleiss J (2009)
Molecular mechanism of the hydration of Candida antarctica lipase B in the gas phase: Water adsorption isotherms and molecular dynamics simulations
Chembiochem 10: 2913

Chen B, Cai Z, Wu W, Huang Y, Pleiss J, Lin Z (2009)
Morphing activity between structurally similar enzymes: from heme-free bromoperoxidase to lipase
Biochemistry 48: 11496

Juhl PB, Trodler P, Tyagi S, Pleiss J (2009)
Modelling substrate specificity and enantioselectivity for lipases and esterases by substrate-imprinted docking
BMC Struct Biol 9: 39

Knoll M, Hamm TM, Wagner F, Martinez V, Pleiss J (2009)
The PHA Depolymerase Engineering Database: A systematic analysis tool for the diverse family of polyhydroxyalkanoate (PHA) depolymerases
BMC Bioinformatics 10: 89

Trodler P, Schmid RD, Pleiss J (2009)
Modeling of solvent-dependent conformational transitions in Burkholderia cepacia lipase
BMC Struct Biol 9: 38

Trodler P, Nieveler J, Rusnak M, Schmid RD, Pleiss J (2008)
Rational design of a new one-step purification strategy for Candida antarctica lipase B by ion-exchange chromatography
Journal of Chromatography A 1179: 161

Trodler P, Pleiss J (2008)
Modeling structure and flexibility of Candida antarctica lipase B in organic solvents
BMC Struct Biol 8: 9

Widmann M, Clairo M, Dippon J, Pleiss J (2008)
Analysis of the distribution of functionally relevant rare codons
BMC Genomics 9: 207

Fischer M, Thai QK, Grieb M, Pleiss J (2006)
DWARF--a data warehouse system for analyzing protein families
BMC Bioinformatics 7: 495

Tyagi S, Pleiss J (2006)
Biochemical profiling in silico--predicting substrate specificities of large enzyme families
J Biotechnol 124: 108

Barth S, Fischer M, Schmid RD, Pleiss J (2004)
The database of epoxide hydrolases and haloalkane dehalogenases: one structure, many functions
Bioinformatics 20: 2845

Barth S, Fischer M, Schmid RD, Pleiss J (2004)
Sequence and structure of epoxide hydrolases: a systematic analysis
Proteins 55: 846

Tejo BA, Salleh AB, Pleiss J (2004)
Structure and dynamics of Candida rugosa lipase: the role of organic solvent
J Mol Model 10: 358

Henke E, Bornscheuer UT, Schmid RD, Pleiss J (2003)
A molecular mechanism of enantiorecognition of tertiary alcohols by carboxylesterases
Chembiochem 4: 485

Henke E, Pleiss J, Bornscheuer UT (2002)
Activity of lipases and esterases towards tertiary alcohols: insights into structure-function relationships
Angew Chem Int Ed Engl 41: 3211

Schmitt J, Brocca S, Schmid RD, Pleiss J (2002)
Blocking the tunnel: engineering of Candida rugosa lipase mutants with short chain length specificity
Protein Engineering 15: 595

Pleiss J, Mionetto N, Schmid RD (1999)
Probing the acyl binding site of acetylcholinesterase by protein engineering
J Mol Catal B Enzym 6: 287

Pleiss J, Fischer M, Schmid RD (1998)
Anatomy of lipase binding sites: the scissile fatty acid binding site
Chemistry & Physic of Lipids 93: 67