Ortseifen V, Winkler A, Albersmeier A, Wendler S, Puhler A, Kalinowski J, Ruckert C (2015) <br />Complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid<br /><i>J Biotechnol</i> <b>194</b>: 81<br /><br />Ruckert C, Szczepanowski R, Albersmeier A, Goesmann A, Fischer N, Steinkamper A, Puhler A, Biener R, Schwartz D, Kalinowski J (2014) <br />Complete genome sequence of the actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin<br /><i>J Biotechnol</i> <b>178</b>: 41<br /><br />Wibberg D, Tielen P, Blom J, Rosin N, Schobert M, Tupker R, Schatschneider S, Spilker D, Albersmeier A, Goesmann A, Vorholter FJ, Puhler A, Jahn D (2014) <br />Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38<br /><i>Genome Announc</i> <b>2</b>: <br /><br />Brinkrolf K, Rupp O, Laux H, Kollin F, Ernst W, Linke B, Kofler R, Romand S, Hesse F, Budach WE, Galosy S, Muller D, Noll T, Wienberg J, Jostock T, Leonard M, Grillari J, Tauch A, Goesmann A, Helk B, Mott JE, Puhler A, Borth N (2013) <br />Chinese hamster genome sequenced from sorted chromosomes<br /><i>Nat Biotechnol</i> <b>31</b>: 694<br /><br />Dagan T, Roettger M, Stucken K, Landan G, Koch R, Major P, Gould SB, Goremykin VV, Rippka R, Tandeau de Marsac N, Gugger M, Lockhart PJ, Allen JF, Brune I, Maus I, Puhler A, Martin WF (2013) <br />Genomes of Stigonematalean cyanobacteria (subsection V) and the evolution of oxygenic photosynthesis from prokaryotes to plastids<br /><i>Genome Biol Evol</i> <b>5</b>: 31<br /><br />Ruckert C, Szczepanowski R, Albersmeier A, Goesmann A, Iftime D, Musiol EM, Blin K, Wohlleben W, Puhler A, Kalinowski J, Weber T (2013) <br />Complete genome sequence of the kirromycin producer Streptomyces collinus Tu 365 consisting of a linear chromosome and two linear plasmids<br /><i>J Biotechnol</i> <b>168</b>: 739<br /><br />Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, Borriss R, Grosch R, Puhler A, Schluter A (2013) <br />Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14<br /><i>J Biotechnol</i> <b>167</b>: 142<br /><br />Hain T, Ghai R, Billion A, Kuenne CT, Steinweg C, Izar B, Mohamed W, Mraheil MA, Domann E, Schaffrath S, Karst U, Goesmann A, Oehm S, Puhler A, Merkl R, Vorwerk S, Glaser P, Garrido P, Rusniok C, Buchrieser C, Goebel W, Chakraborty T (2012) <br />Comparative genomics and transcriptomics of lineages I, II, and III strains of Listeria monocytogenes<br /><i>BMC Genomics</i> <b>13</b>: 144<br /><br />Heinl S, Wibberg D, Eikmeyer F, Szczepanowski R, Blom J, Linke B, Goesmann A, Grabherr R, Schwab H, Puhler A, Schluter A (2012) <br />Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage<br /><i>J Biotechnol</i> <b>161</b>: 153<br /><br />Schneider J, Andrea H, Blom J, Jaenicke S, Ruckert C, Schorsch C, Szczepanowski R, Farwick M, Goesmann A, Puhler A, Schaffer S, Tauch A, Kohler T, Brinkrolf K (2012) <br />Draft genome sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10<br /><i>Eukaryot Cell</i> <b>11</b>: 1582<br /><br />Schork S, Schluter A, Blom J, Schneiker-Bekel S, Puhler A, Goesmann A, Frosch M, Schoen C (2012) <br />Genome sequence of a Neisseria meningitidis capsule null locus strain from the clonal complex of sequence type 198<br /><i>Journal of Bacteriology</i> <b>194</b>: 5144<br /><br />Strobel T, Al-Dilaimi A, Blom J, Gessner A, Kalinowski J, Luzhetska M, Puhler A, Szczepanowski R, Bechthold A, Ruckert C (2012) <br />Complete genome sequence of Saccharothrix espanaensis DSM 44229(T) and comparison to the other completely sequenced Pseudonocardiaceae<br /><i>BMC Genomics</i> <b>13</b>: 465<br /><br />Weidner S, Becker A, Bonilla I, Jaenicke S, Lloret J, Margaret I, Puhler A, Ruiz-Sainz JE, Schneiker-Bekel S, Szczepanowski R, Vinardell JM, Zehner S, Gottfert M (2012) <br />Genome sequence of the soybean symbiont Sinorhizobium fredii HH103<br /><i>Journal of Bacteriology</i> <b>194</b>: 1617<br /><br />Borriss R, Chen XH, Rueckert C, Blom J, Becker A, Baumgarth B, Fan B, Pukall R, Schumann P, Sproer C, Junge H, Vater J, Puhler A, Klenk HP (2011) <br />Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons<br /><i>Int J Syst Evol Microbiol</i> <b>61</b>: 1786<br /><br />Kuberl A, Schneider J, Thallinger GG, Anderl I, Wibberg D, Hajek T, Jaenicke S, Brinkrolf K, Goesmann A, Szczepanowski R, Puhler A, Schwab H, Glieder A, Pichler H (2011) <br />High-quality genome sequence of Pichia pastoris CBS7435<br /><i>J Biotechnol</i> <b>154</b>: 312<br /><br 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H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid<br /><i>J Biotechnol</i> <b>155</b>: 50<br /><br />Steinweg C, Kuenne CT, Billion A, Mraheil MA, Domann E, Ghai R, Barbuddhe SB, Karst U, Goesmann A, Puhler A, Weisshaar B, Wehland J, Lampidis R, Kreft J, Goebel W, Chakraborty T, Hain T (2010) <br />Complete genome sequence of Listeria seeligeri, a nonpathogenic member of the genus Listeria<br /><i>Journal of Bacteriology</i> <b>192</b>: 1473<br /><br />Trost E, Gotker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehoever P, Arnold W, Bekel T, Blom J, Gartemann KH, Linke B, Goesmann A, Puhler A, Shukla SK, Tauch A (2010) <br />Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion<br /><i>BMC Genomics</i> <b>11</b>: 91<br /><br />Strittmatter AW, Liesegang H, Rabus R, Decker I, Amann J, Andres S, Henne A, Fricke WF, Martinez-Arias R, Bartels D, Goesmann A, Krause L, Puhler A, Klenk HP, Richter M, Schuler M, Glockner FO, Meyerdierks A, Gottschalk G, Amann R (2009) <br />Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide<br /><i>Environ Microbiol</i> <b>11</b>: 1038<br /><br />Gartemann KH, Abt B, Bekel T, Burger A, Engemann J, Flugel M, Gaigalat L, Goesmann A, Grafen I, Kalinowski J, Kaup O, Kirchner O, Krause L, Linke B, McHardy A, Meyer F, Pohle S, Ruckert C, Schneiker S, Zellermann EM, Puhler A, Eichenlaub R, Kaiser O, Bartels D (2008) <br />The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity<br /><i>Journal of Bacteriology</i> <b>190</b>: 2138<br /><br />Gross R, Guzman CA, Sebaihia M, dos Santos VA, Pieper DH, Koebnik R, Lechner M, Bartels D, Buhrmester J, Choudhuri JV, Ebensen T, Gaigalat L, Herrmann S, Khachane AN, Larisch C, Link S, Linke B, Meyer F, Mormann S, Nakunst D, Ruckert C, Schneiker-Bekel S, Schulze K, Vorholter FJ, Yevsa T, Engle JT, Goldman WE, Puhler A, Gobel UB, Goesmann A, Blocker H, Kaiser O, Martinez-Arias R (2008) <br />The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae<br /><i>BMC Genomics</i> <b>9</b>: 449<br /><br />Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehoever P, Gartemann KH, Arnold W, Blom J, Brinkrolf K, Brune I, Gotker S, Weisshaar B, Goesmann A, Droge M, Puhler A (2008) <br />Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids<br /><i>J Biotechnol</i> <b>136</b>: 22<br /><br />Tauch A, Trost E, Tilker A, Ludewig U, Schneiker S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Gotker S, Kalinowski J, Kamp PB, Lobo FP, Viehoever P, Weisshaar B, Soriano F, Droge M, Puhler A (2008) <br />The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing<br /><i>J Biotechnol</i> <b>136</b>: 11<br /><br />Vorholter FJ, Schneiker S, Goesmann A, Krause L, Bekel T, Kaiser O, Linke B, Patschkowski T, Ruckert C, Schmid J, Sidhu VK, Sieber V, Tauch A, Watt SA, Weisshaar B, Becker A, Niehaus K, Puhler A (2008) <br />The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis<br /><i>J Biotechnol</i> <b>134</b>: 33<br /><br />Schneiker S, Perlova O, Kaiser O, Gerth K, Alici A, Altmeyer MO, Bartels D, Bekel T, Beyer S, Bode E, Bode HB, Bolten CJ, Choudhuri JV, Doss S, Elnakady YA, Frank B, Gaigalat L, Goesmann A, Groeger C, Gross F, Jelsbak L, 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B, Wehland J, Liang C, Dandekar T, Lampidis R, Kreft J, Goebel W, Chakraborty T (2006) <br />Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes<br /><i>Journal of Bacteriology</i> <b>188</b>: 7405<br /><br />Krause A, Ramakumar A, Bartels D, Battistoni F, Bekel T, Boch J, Bohm M, Friedrich F, Hurek T, Krause L, Linke B, McHardy AC, Sarkar A, Schneiker S, Syed AA, Thauer R, Vorholter FJ, Weidner S, Puhler A, Reinhold-Hurek B, Kaiser O, Goesmann A (2006) <br />Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72<br /><i>Nat Biotechnol</i> <b>24</b>: 1385<br /><br />Schneiker S, Martins dos Santos VA, Bartels D, Bekel T, Brecht M, Buhrmester J, Chernikova TN, Denaro R, Ferrer M, Gertler C, Goesmann A, Golyshina OV, Kaminski F, Khachane AN, Lang S, Linke B, McHardy AC, Meyer F, Nechitaylo T, Puhler A, Regenhardt D, Rupp O, Sabirova JS, Selbitschka W, Yakimov MM, Timmis KN, Vorholter FJ, Weidner S, Kaiser O, Golyshin PN (2006) <br />Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis<br /><i>Nat Biotechnol</i> <b>24</b>: 997<br /><br />Stiens M, Schneiker S, Keller M, Kuhn S, Puhler A, Schluter A (2006) <br />Sequence analysis of the 144-kilobase accessory plasmid pSmeSM11a, isolated from a dominant Sinorhizobium meliloti strain identified during a long-term field release experiment<br /><i>Applied Environmental Microbiology</i> <b>72</b>: 3662<br /><br />Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker S, Viehoever P, Puhler A (2005) <br />Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora<br /><i>Journal of Bacteriology</i> <b>187</b>: 4671<br /><br />Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Buttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, Kirchner O, Lanz C, Linke B, McHardy AC, Meyer F, Mittenhuber G, Nies DH, Niesbach-Klosgen U, Patschkowski T, Ruckert C, Rupp O, Schneiker S, Schuster SC, Vorholter FJ, Weber E, Puhler A, Bonas U, Bartels D, Kaiser O (2005) <br />Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence<br /><i>Journal of Bacteriology</i> <b>187</b>: 7254<br /><br />Brand S, Niehaus K, Puhler A, Kalinowski J (2003) <br />Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope<br /><i>Arch Microbiol</i> <b>180</b>: 33<br /><br />Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Puhler A, Rey DA, Ruckert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A (2003) <br />The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins<br /><i>J Biotechnol</i> <b>104</b>: 5<br /><br />Tauch A, Gotker S, Puhler A, Kalinowski J, Thierbach G (2002) <br />The alanine racemase gene alr is an alternative to antibiotic resistance genes in cloning systems for industrial Corynebacterium glutamicum strains<br /><i>J Biotechnol</i> <b>99</b>: 79<br /><br />Capela D, Barloy-Hubler F, Gouzy J, Bothe G, Ampe F, Batut J, Boistard P, Becker A, Boutry M, Cadieu E, Dreano S, Gloux S, Godrie T, Goffeau A, Kahn D, Kiss E, Lelaure V, Masuy D, Pohl T, Portetelle D, Puhler A, Purnelle B, Ramsperger U, Renard C, Thebault P, Vandenbol M, Weidner S, Galibert F (2001) <br />Analysis of 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