Ohta Y, Katsumata M, Kurosawa K, Takaki Y, Nishimura H, Watanabe T, Kasuya KI (2021) <br />Degradation of ester linkages in rice straw components by Sphingobium species recovered from the sea bottom using a non-secretory tannase-family alpha/beta hydrolase<br /><i>Environ Microbiol</i> <br /><br />Takami H, Toyoda A, Uchiyama I, Itoh T, Takaki Y, Arai W, Nishi S, Kawai M, Shin-Ya K, Ikeda H (2017) <br />Complete genome sequence and expression profile of the commercial lytic enzyme producer Lysobacter enzymogenes M497-1<br /><i>DNA Research</i> <b>24</b>: 169<br /><br />Kawai M, Futagami T, Toyoda A, Takaki Y, Nishi S, Hori S, Arai W, Tsubouchi T, Morono Y, Uchiyama I, Ito T, Fujiyama A, Inagaki F, Takami H (2014) <br />High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes<br /><i>Front Microbiol</i> <b>5</b>: 80<br /><br />Nakagawa S, Shimamura S, Takaki Y, Suzuki Y, Murakami S, Watanabe T, Fujiyoshi S, Mino S, Sawabe T, Maeda T, Makita H, Nemoto S, Nishimura S, Watanabe H, Watsuji TO, Takai K (2014) <br />Allying with armored snails: the complete genome of gammaproteobacterial endosymbiont<br /><i>Isme J</i> <b>8</b>: 40<br /><br />Tsubouchi T, Nishi S, Usui K, Shimane Y, Takaki Y, Maruyama T, Hatada Y (2013) <br />Draft Genome Sequence of the Dimorphic Prosthecate Bacterium Brevundimonas abyssalis TAR-001T<br /><i>Genome Announc</i> <b>1</b>: e00826<br /><br />Takami H, Noguchi H, Takaki Y, Uchiyama I, Toyoda A, Nishi S, Chee GJ, Arai W, Nunoura T, Itoh T, Hattori M, Takai K (2012) <br />A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem<br /><i>PLoS ONE</i> <b>7</b>: e30559<br /><br />Nunoura T, Takaki Y, Kakuta J, Nishi S, Sugahara J, Kazama H, Chee GJ, Hattori M, Kanai A, Atomi H, Takai K, Takami H (2011) <br />Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group<br /><i>Nucleic Acids Research</i> <b>39</b>: 3204<br /><br />Sakai S, Takaki Y, Shimamura S, Sekine M, Tajima T, Kosugi H, Ichikawa N, Tasumi E, Hiraki AT, Shimizu A, Kato Y, Nishiko R, Mori K, Fujita N, Imachi H, Takai K (2011) <br />Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales<br /><i>PLoS ONE</i> <b>6</b>: e22898<br /><br />Takaki Y, Shimamura S, Nakagawa S, Fukuhara Y, Horikawa H, Ankai A, Harada T, Hosoyama A, Oguchi A, Fukui S, Fujita N, Takami H, Takai K (2010) <br />Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1<br /><i>DNA Research</i> <b>17</b>: 123<br /><br />Kuwahara H, Yoshida T, Takaki Y, Shimamura S, Nishi S, Harada M, Matsuyama K, Takishita K, Kawato M, Uematsu K, Fujiwara Y, Sato T, Kato C, Kitagawa M, Kato I, Maruyama T (2007) <br />Reduced genome of the thioautotrophic intracellular symbiont in a deep-sea clam, Calyptogena okutanii<br /><i>Current Biology</i> <b>17</b>: 881<br /><br />Nakagawa S, Takaki Y, Shimamura S, Reysenbach AL, Takai K, Horikoshi K (2007) <br />Deep-sea vent epsilon-proteobacterial genomes provide insights into emergence of pathogens<br /><i>Proc Natl Acad Sci U S A</i> <b>104</b>: 12146<br /><br />Takami H, Takaki Y, Chee GJ, Nishi S, Shimamura S, Suzuki H, Matsui S, Uchiyama I (2004) <br />Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus<br /><i>Nucleic Acids Research</i> <b>32</b>: 6292<br /><br />Takami H, Nishi S, Lu J, Shimamura S, Takaki Y (2004) <br />Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench<br /><i>Extremophiles</i> <b>8</b>: 351<br /><br />Takami H, Takaki Y, Uchiyama I (2002) <br />Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments<br /><i>Nucleic Acids Research</i> <b>30</b>: 3927<br /><br />Takami H, Nakasone K, Takaki Y, Maeno G, Sasaki R, Masui N, Fuji F, Hirama C, Nakamura Y, Ogasawara N, Kuhara S, Horikoshi K (2000) <br />Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis<br /><i>Nucleic Acids Research</i> <b>28</b>: 4317<br /><br />Takami H, Nakasone K, Hirama C, Takaki Y, Masui N, Fuji F, Nakamura Y, Inoue A (1999) <br />An improved physical and genetic map of the genome of alkaliphilic Bacillus sp. C-125<br /><i>Extremophiles</i> <b>3</b>: 21<br /><br />