Miyazaki S, Tomita K, Yamane H, Kobayashi M, Asami T, Nakajima M (2018)
Characterization of a helminthosporic acid analog that is a selective agonist of gibberellin receptor
Bioorganic & Medicinal Chemistry Lett 28: 2465

Shintani M, Takahashi Y, Tokumaru H, Kadota K, Hara H, Miyakoshi M, Naito K, Yamane H, Nishida H, Nojiri H (2010)
Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1
Environ Microbiol 12: 1413

Yun CS, Suzuki C, Naito K, Takeda T, Takahashi Y, Sai F, Terabayashi T, Miyakoshi M, Shintani M, Nishida H, Yamane H, Nojiri H (2010)
Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function
Journal of Bacteriology 192: 4720

Miyakoshi M, Nishida H, Shintani M, Yamane H, Nojiri H (2009)
High-resolution mapping of plasmid transcriptomes in different host bacteria
BMC Genomics 10: 12

Takahashi Y, Shintani M, Li L, Yamane H, Nojiri H (2009)
Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway
Applied Environmental Microbiology 75: 3920

Takahashi Y, Shintani M, Yamane H, Nojiri H (2009)
The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids
Biosci Biotechnol Biochem 73: 744

Shintani M, Urata M, Inoue K, Eto K, Habe H, Omori T, Yamane H, Nojiri H (2007)
The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole
Journal of Bacteriology 189: 2007

Inoue K, Habe H, Yamane H, Nojiri H (2006)
Characterization of novel carbazole catabolism genes from gram-positive carbazole degrader Nocardioides aromaticivorans IC177
Applied Environmental Microbiology 72: 3321

Urata M, Uchimura H, Noguchi H, Sakaguchi T, Takemura T, Eto K, Habe H, Omori T, Yamane H, Nojiri H (2006)
Plasmid pCAR3 contains multiple gene sets involved in the conversion of carbazole to anthranilate
Applied Environmental Microbiology 72: 3198

Fushinobu S, Jun SY, Hidaka M, Nojiri H, Yamane H, Shoun H, Omori T, Wakagi T (2005)
A series of crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with various cleavage products
Biosci Biotechnol Biochem 69: 491

Habe H, Chung JS, Ishida A, Kasuga K, Ide K, Takemura T, Nojiri H, Yamane H, Omori T (2005)
The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria
Microbiology 151: 3713

Inoue K, Habe H, Yamane H, Omori T, Nojiri H (2005)
Diversity of carbazole-degrading bacteria having the car gene cluster: isolation of a novel gram-positive carbazole-degrading bacterium
FEMS Microbiology Letters 245: 145

Shintani M, Habe H, Tsuda M, Omori T, Yamane H, Nojiri H (2005)
Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains
Biotechnol Lett 27: 1847

Takagi T, Habe H, Yoshida T, Yamane H, Omori T, Nojiri H (2005)
Characterization of [3Fe-4S] ferredoxin DbfA3, which functions in the angular dioxygenase system of Terrabacter sp. strain DBF63
Applied Microbiology & Biotechnology 68: 336

Habe H, Chung JS, Kato H, Ayabe Y, Kasuga K, Yoshida T, Nojiri H, Yamane H, Omori T (2004)
Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63
Journal of Bacteriology 186: 5938

Jikumaru Y, Asami T, Seto H, Yoshida S, Yokoyama T, Obara N, Hasegawa M, Kodama O, Nishiyama M, Okada K, Nojiri H, Yamane H (2004)
Preparation and biological activity of molecular probes to identify and analyze jasmonic acid-binding proteins
Biosci Biotechnol Biochem 68: 1461

Habe H, Morii K, Fushinobu S, Nam JW, Ayabe Y, Yoshida T, Wakagi T, Yamane H, Nojiri H, Omori T (2003)
Crystal structure of a histidine-tagged serine hydrolase involved in the carbazole degradation (CarC enzyme)
Biochemical & Biophysical Research Communications 303: 631

Nojiri H, Taira H, Iwata K, Morii K, Nam JW, Yoshida T, Habe H, Nakamura S, Shimizu K, Yamane H, Omori T (2003)
Purification and characterization of meta-cleavage compound hydrolase from a carbazole degrader Pseudomonas resinovorans strain CA10
Biosci Biotechnol Biochem 67: 36

Fushinobu S, Saku T, Hidaka M, Jun SY, Nojiri H, Yamane H, Shoun H, Omori T, Wakagi T (2002)
Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products
Protein Science 11: 2184

Sasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z, Nagamura Y, Antonio BA, Kanamori H, Hosokawa S, Masukawa M, Arikawa K, Chiden Y, Hayashi M, Okamoto M, Ando T, Aoki H, Arita K, Hamada M, Harada C, Hijishita S, Honda M, Ichikawa Y, Idonuma A, Iijima M, Ikeda M, Ikeno M, Ito S, Ito T, Ito Y, Iwabuchi A, Kamiya K, Karasawa W, Katagiri S, Kikuta A, Kobayashi N, Kono I, Machita K, Maehara T, Mizuno H, Mizubayashi T, Mukai Y, Nagasaki H, Nakashima M, Nakama Y, Nakamichi Y, Nakamura M, Namiki N, Negishi M, Ohta I, Ono N, Saji S, Sakai K, Shibata M, Shimokawa T, Shomura A, Song J, Takazaki Y, Terasawa K, Tsuji K, Waki K, Yamagata H, Yamane H, Yoshiki S, Yoshihara R, Yukawa K, Zhong H, Iwama H, Endo T, Ito H, Hahn JH, Kim HI, Eun MY, Yano M, Jiang J, Gojobori T (2002)
The genome sequence and structure of rice chromosome 1
Nature 420: 312

Kasuga K, Habe H, Chung JS, Yoshida T, Nojiri H, Yamane H, Omori T (2001)
Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63
Biochemical & Biophysical Research Communications 283: 195

Kasuga K, Nojiri H, Yamane H, Kodama T, Omori T (1997)
Cloning and characterization of genes involved in the degradation of dibenzofuran by Terrabacter sp. strain DBF63.
J Ferment Bioeng 84: 387

Sato SI, Ouchiyama N, Kimura T, Nojiri H, Yamane H, Omori T (1997)
Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase
Journal of Bacteriology 179: 4841

Sato SI, Nam JW, Kasuga K, Nojiri H, Yamane H, Omori T (1997)
Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10
Journal of Bacteriology 179: 4850

Habe H, Kasuga K, Nojiri H, Yamane H, Omori T (1996)
Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01
Applied Environmental Microbiology 62: 4471