Family Report for: Bacterial_lip_FamI.2 Database
Sequences
Interpro
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PIRSF
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PFam
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no EC number
References
Title: Lipases for biotechnology
Jaeger KE , Eggert T
Ref: Curr Opin Biotechnol, 13 :390, 2002 : PubMed Abstract ESTHER: Jaeger_2002_Curr.Opin.Biotechnol_13_390 PubMedSearch: Jaeger 2002 Curr.Opin.Biotechnol 13 390 PubMedID: 12323363 Abstract
Lipases constitute the most important group of biocatalysts for biotechnological applications. The high-level production of microbial lipases requires not only the efficient overexpression of the corresponding genes but also a detailed understanding of the molecular mechanisms governing their folding and secretion. The optimisation of industrially relevant lipase properties can be achieved by directed evolution. Furthermore, novel biotechnological applications have been successfully established using lipases for the synthesis of biopolymers and biodiesel, the production of enantiopure pharmaceuticals, agrochemicals, and flavour compounds.
         Title: Bacterial lipolytic enzymes: classification and properties
Arpigny JL , Jaeger KE
Ref: Biochemical Journal, 343 :177, 1999 : PubMed Abstract ESTHER: Arpigny_1999_Biochem.J_343_177 PubMedSearch: Arpigny 1999 Biochem.J 343 177 PubMedID: 10493927 Abstract
Knowledge of bacterial lipolytic enzymes is increasing at a rapid and exciting rate. To obtain an overview of this industrially very important class of enzymes and their characteristics, we have collected and classified the information available from protein and nucleotide databases. Here we propose an updated and extensive classification of bacterial esterases and lipases based mainly on a comparison of their amino acid sequences and some fundamental biological properties. These new insights result in the identification of eight different families with the largest being further divided into six subfamilies. Moreover, the classification enables us to predict (1) important structural features such as residues forming the catalytic site or the presence of disulphide bonds, (2) types of secretion mechanism and requirement for lipase-specific foldases, and (3) the potential relationship to other enzyme families. This work will therefore contribute to a faster identification and to an easier characterization of novel bacterial lipolytic enzymes.
         Other Papers
Structures in Bacterial_lip_FamI.2 family
(15)
Structure Names Protein
1CVL (f )Chromobacterium viscosum lipase burgl-lipas
1HQD (f )Pseudomonas Cepacia Lipase Complexed With Transition State Analogue Of 1-Phenoxy-2-Acetoxy Butane burce-q75nt4
1OIL (f )Pseudomonas cepacia lipase burce-lipaa
1QGE (f )Pseudomonas glumae lipase: new crystal burgl-lipas
1TAH (f )Pseudomonas glumae lipase burgl-lipas
1YS1 (f )Burkholderia cepacia lipase complexed with hexylphosphonic acid (R)-2-methyl-3-phenylpropyl ester burce-lipaa
1YS2 (f )Burkholderia cepacia lipase complexed with hexaphosphonic acid (S) 2-methyl-3-phenylpropyl ester burce-lipaa
2ES4 (f )Crystal structure of the Burkholderia glumae lipase-specific foldase in complex with its cognate lipase burgl-lipas
2LIP (f )Pseudomonas cepacia lipase open conformation burce-lipaa
2NW6 (f )Burkholderia cepacia lipase complexed with S-inhibitor burce-q75nt4
3LIP (f )Pseudomonas cepacia lipase open conformation burce-lipaa
4LIP (f )Pseudomonas cepacia lipase + Rc-(Rp,Sp)-Dibutylcarbamoylglycero-3-O-Butylphosphonate burce-lipaa
5LIP (f )Pseudomonas cepacia lipase + Rc-(Rp,Sp)-1,2-Dioctylcarbamoylglycero-3-O-Octylphosphonate burce-lipaa
7COF (f )Cholesterol esterase from Burkholderia stabilis (orthorhombic crystal form) 9burk-EstA
7COG (f )Cholesterol esterase from Burkholderia stabilis (monoclinic crystal form) 9burk-EstA
Genes Proteins in Bacterial_lip_FamI.2 family
(19)
No fragments
Substrates of some enzymes in the Bacterial_lip_FamI.2 family
(5)
Inhibitors of some enzymes in the Bacterial_lip_FamI.2 family
(8)
Inhibitor Chemical_Nomenclature Protein
BCP [(2R)-2,3-bis(butylcarbamoyloxy)propoxy]-butylphosphinic acid fusso-cutas
Butylphosphonic-acid butylphosphonic acid burce-lipaa
di-O-octylglycero-O-(p-nitrophenyl)-n-hexyl-phosphonate Di-O-octyl-sn-glycero)-O-(p-nitrophenyl)-n-hexylphosphonate, burgl-lipas
di-O-octylglycero-O-(p-nitrophenyl)-n-hexyl-phosphonate Di-O-octyl-sn-glycero)-O-(p-nitrophenyl)-n-hexylphosphonate, rhidl-lipas
Hexyl(2R)-2-methyl-3-phenylpropoxyphosphinic-acid hexyl-[(2R)-2-methyl-3-phenylpropoxy]phosphinic acid burce-lipaa
Hexyl(2S)-2-methyl-3-phenylpropoxyphosphinic-acid hexyl-[(2S)-2-methyl-3-phenylpropoxy]phosphinic acid burce-lipaa
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-hslip
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-Ces1d
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-MGLL
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-ES10
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-Abhd11
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide drome-CG2059
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-lypla2
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide drome-CG18815
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-lypla1
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-Ces1c
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-Ces1f
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-PPME1
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-apeh
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-abhd5
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide drome-CG1882
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide mouse-lypl1
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide burce-lipaa
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide rhidl-lipas
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide drome-EST23aes07
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide drome-este6
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide drome-CG5355
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide drome-aes05
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide drome-aes02
NBD-HE-HP N-[2-[hexyl-(4-nitrophenoxy)phosphoryl]oxyethyl]-6-[(4-nitro-2,1,3-benzoxadiazol-7-yl)amino]hexanamide drome-CG8425
OCP [(2R)-2,3-bis(octylcarbamoyloxy)propoxy]-octylphosphinic acid pseae-llipa
OCP [(2R)-2,3-bis(octylcarbamoyloxy)propoxy]-octylphosphinic acid burce-lipaa
TSA-Phenoxy-Acetoxy-Butane [(2R)-2-[chloro(methyl)phosphoryl]oxybutoxy]benzene burce-q75nt4