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Gene_locus Report for: 9bact-a3ht61

Algoriphagus sp. PR1 Alpha/beta fold family hydrolase

Relationship
Family|abh_upf0017
Block| X
Position in NCBI Life Tree|Algoriphagus sp. PR1
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > FCB group: N E > Bacteroidetes/Chlorobi group: N E > Bacteroidetes: N E > Cytophagia: N E > Cytophagales: N E > Cyclobacteriaceae: N E > Algoriphagus: N E > Algoriphagus machipongonensis: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : AAXU02000001
1 UniProt : A3HT61
1 UniProt : A3HT61
1 Interpro : A3HT61
1 Pfam : A3HT61
1 PIRSF : A3HT61
1 SUPERFAM : A3HT61
Sequence
Peptide
Graphical view for this peptide sequence: 9bact-a3ht61
Colored MSA for abh_upf0017 (raw) 
MPIIPSTYPGPPAFLINGHLETIIPSLFRKVEGVNYQRQKIDTPDGDFLN
LDWSKVGSSKLLIISHGLEGDSERHYARGLVKLFNQNQIDVLVWNNRTCG
GEINNLPILYHHGASYDLEAVVDFVLKNDDYQEIYLSGISMGGAQTLKYL
GEKGERISEKIKKAAVYSTPCNLPSSAATLKLKSNIFYKKRFLGKLKKKM
ALKAVQFPELVDLNLLESVEDFDAFDTQFTAKIHGFKDASDFYQTVSADN
WMEDIHVPTLIINALNDPLLGPECYPIELAERKSQIYLEMPKRGGHTGFA
WRGHEFTWAEYRLLEFLTSEN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
MPIIPSTYPGPPAFLINGHLETIIPSLFRKVEGVNYQRQKIDTPDGDFLN
LDWSKVGSSKLLIISHGLEGDSERHYARGLVKLFNQNQIDVLVWNNRTCG
GEINNLPILYHHGASYDLEAVVDFVLKNDDYQEIYLSGISMGGAQTLKYL
GEKGERISEKIKKAAVYSTPCNLPSSAATLKLKSNIFYKKRFLGKLKKKM
ALKAVQFPELVDLNLLESVEDFDAFDTQFTAKIHGFKDASDFYQTVSADN
WMEDIHVPTLIINALNDPLLGPECYPIELAERKSQIYLEMPKRGGHTGFA
WRGHEFTWAEYRLLEFLTSEN

Reference
    Title: Complete genome sequence of Algoriphagus sp. PR1, bacterial prey of a colony-forming choanoflagellate
    Alegado RA, Ferriera S, Nusbaum C, Young SK, Zeng Q, Imamovic A, Fairclough SR, King N
    Ref: Journal of Bacteriology, 193:1485, 2011 : PubMed

            


Other Papers

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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