Gene_Locus Report

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Gene_locus Report for: 9myco-a0a024m2v2.2

Mycobacterium farcinogenes. Alpha/beta hydrolase

Comment
three repeats of Pfam Abhydrolase_8 993 1174; 1465 1647; 1963 2144


Relationship
Family|Duf_1023
Block| X
Position in NCBI Life Tree|Mycobacterium farcinogenes
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Actinobacteria [phylum]: N E > Actinobacteria [class]: N E > Corynebacteriales: N E > Mycobacteriaceae: N E > Mycobacterium: N E > Mycobacterium farcinogenes: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : HG964482
Sequence
Graphical view for this peptide sequence: 9myco-a0a024m2v2.2
Colored MSA for Duf_1023 (raw)
AQERYVKLMNGIDAAMRTAERNVEKFGMRDQGPYLLALDPQAFGGVGRAI
VSFGANPYTAQSVSWYVPGMSTTIDKLSLITSRAFNQLRSVQQENPDLSV
ASIAYIGYRAPGSWDAKVLSQRLAREGGEIFCSDISAFNAGRDVFTGDGS
HFSGNHVFAHSYGSSTVSHAGSGRRLAEQVRTITLIGSPGAGPMRHASQF
GIGDNVFVAASSRDPVTGFGGERPGLLSRFNGRTGQGTDPAMHEFGARRI
TAEFPAAVDHRGAGSRMTHSLYWAYMDPGTTQVRSESLANFGRIAAGRTD
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

AQERYVKLMNGIDAAMRTAERNVEKFGMRDQGPYLLALDPQAFGGVGRAI
VSFGANPYTAQSVSWYVPGMSTTIDKLSLITSRAFNQLRSVQQENPDLSV
ASIAYIGYRAPGSWDAKVLSQRLAREGGEIFCSDISAFNAGRDVFTGDGS
HFSGNHVFAHSYGSSTVSHAGSGRRLAEQVRTITLIGSPGAGPMRHASQF
GIGDNVFVAASSRDPVTGFGGERPGLLSRFNGRTGQGTDPAMHEFGARRI
TAEFPAAVDHRGAGSRMTHSLYWAYMDPGTTQVRSESLANFGRIAAGRTD


Reference
    Title: Draft Genome Sequence of Mycobacterium farcinogenes NCTC 10955
    Croce O, Robert C, Raoult D, Drancourt M
    Ref: Genome Announc, 2:, 2014 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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