Gene_Locus Report
Biblio print
Add to basket
Go to basket
Tree Display
AceDB Schema
XML Display
Feedback

Gene_locus Report for: 9oryz-a0a0d9zru5

Oryza glumipatula; Oryza barthii. Lipase_3 domain-containing protein

Comment
Other strains: Oryza glumipatula; Oryza barthii


Relationship
Family|Triacylglycerol-lipase-OBL1-like
Block| L
Position in NCBI Life Tree|Oryza glumipatula
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza glumipatula: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Peptide
Graphical view for this peptide sequence: 9oryz-a0a0d9zru5
Colored MSA for Triacylglycerol-lipase-OBL1-like (raw) 
MSKLDYCFSNDYMVLRPDRAGAYELLHLLFSPKVGRNKAVDCFTSTELHS
FRRRLSIFLNLLLQLFLLSLVGPLVAVLGGALEFALNLASNVLHGRMEYP
DRKSASYRSITGLIDPRVDLERSITPADSRYHAALCVMASKVAYENEAFI
RDVVTRRWQMEFVQFFNCWNEFENAYTAQAFVFCDKAADAELVVVAFRGT
PALDVARWCADVDPSWYKIPRLGRAHAAYTHALGAQRNIGWPKWVEHVKG
KPQRVHAYYAIRDAVKRLLEANGRARVLVAGHGSGGALAVLFATVLAYHK
EKAALDRLVGVYTFGQPRVGDAMLAMFAERNLDRPRKRHFRITYGDDPLP
RLPHESSAAHFLHFGIRLHFDSLYNLKVVKELPGDGSSSSSAAEFATSRI
NAAWELARSAYLGYWRSAYCREGWLLMAARAAAVALPGLPFHRVQDYVNA
VTLAGSNIPKDM
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
MSKLDYCFSNDYMVLRPDRAGAYELLHLLFSPKVGRNKAVDCFTSTELHS
FRRRLSIFLNLLLQLFLLSLVGPLVAVLGGALEFALNLASNVLHGRMEYP
DRKSASYRSITGLIDPRVDLERSITPADSRYHAALCVMASKVAYENEAFI
RDVVTRRWQMEFVQFFNCWNEFENAYTAQAFVFCDKAADAELVVVAFRGT
PALDVARWCADVDPSWYKIPRLGRAHAAYTHALGAQRNIGWPKWVEHVKG
KPQRVHAYYAIRDAVKRLLEANGRARVLVAGHGSGGALAVLFATVLAYHK
EKAALDRLVGVYTFGQPRVGDAMLAMFAERNLDRPRKRHFRITYGDDPLP
RLPHESSAAHFLHFGIRLHFDSLYNLKVVKELPGDGSSSSSAAEFATSRI
NAAWELARSAYLGYWRSAYCREGWLLMAARAAAVALPGLPFHRVQDYVNA
VTLAGSNIPKDM

Reference
    Title: De Novo Next Generation Sequencing of Plant Genomes
    Rounsley S, Marri PR, Yu Y, He R, Sisneros N, Goicoechea JL, Lee SJ, Angelova A, Kudrna D and Wing RA <6 more author(s)>
    Ref: Rice, 2:35, 2009 : PubMed

            


Other Papers

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer