Gene_Locus Report

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Gene_locus Report for: 9poal-a0a0d5nt23

Saccharum hybrid cultivar ROC22 (676074) High tillering and dwarf 2 protein

Relationship
Family|RsbQ-like
Block| X
Position in NCBI Life Tree|Saccharum hybrid cultivar ROC22
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > PACMAD clade: N E > Panicoideae: N E > Andropogonodae: N E > Andropogoneae: N E > Saccharinae: N E > Saccharum: N E > Saccharum officinarum complex: N E > Saccharum hybrid cultivar: N E > Saccharum hybrid cultivar ROC22: N E


Molecular evidence
Database
No mutation
1 structure:
7F5W: Conserved and divergent strigolactone signaling in Saccharum spontaneum
No kinetic





No Substrate
No inhibitor
2 Genbank : AJY78078, QZA74800
1 UniProt : A0A0D5NT23
1 Structure : 7F5W
1 UniProt : A0A0D5NT23
1 Interpro : A0A0D5NT23
1 Pfam : A0A0D5NT23
1 PIRSF : A0A0D5NT23
1 SUPERFAM : A0A0D5NT23
Sequence
Graphical view for this peptide sequence: 9poal-a0a0d5nt23
Colored MSA for RsbQ-like (raw)
MLRSTHSPSGSSSAAPASSSSDAAMVGGGGAAAAAGSGGAPSGAKLLQIL
NVRVVGNGDRVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVN
PEHFDFRRYDTLDSYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRR
PELFAKLVLIGASPRFLNDNDYHGGFELPEIQQVFDAMAANYSAWAVGYA
PLAVGADVPAAVQEFSRTLFNMRPDISLHVCRTVFNTDLRGVLGMVRSPC
VVVQTTRDVSVPASVAAYLRAHLGGRTTVEFLQTEGHLPHLSAPGLLAQV
LRRALARY
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MLRSTHSPSGSSSAAPASSSSDAAMVGGGGAAAAAGSGGAPSGAKLLQIL
NVRVVGNGDRVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVN
PEHFDFRRYDTLDSYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRR
PELFAKLVLIGASPRFLNDNDYHGGFELPEIQQVFDAMAANYSAWAVGYA
PLAVGADVPAAVQEFSRTLFNMRPDISLHVCRTVFNTDLRGVLGMVRSPC
VVVQTTRDVSVPASVAAYLRAHLGGRTTVEFLQTEGHLPHLSAPGLLAQV
LRRALARY


Reference
    Title: Identification of Conserved and Divergent Strigolactone Receptors in Sugarcane Reveals a Key Residue Crucial for Plant Branching Control
    Hu A, Zhao Q, Chen L, Zhao J, Wang Y, Feng K, Wu L, Xie M, Zhou X and Yao R <3 more author(s)>
    Ref: Front Plant Sci, 12:747160, 2021 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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