Gene_Locus Report

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Gene_locus Report for: 9pseu-m2z3i8

Amycolatopsis decaplanina DSM 44594. Alpha/beta hydrolase

Comment
only c-term Pfam_A Abhydrolase_6 256 488


Relationship
Family|NFM-deformylase
Block| X
Position in NCBI Life Tree|Amycolatopsis decaplanina DSM 44594
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Actinobacteria [phylum]: N E > Actinobacteria [class]: N E > Pseudonocardiales: N E > Pseudonocardiaceae: N E > Amycolatopsis: N E > Amycolatopsis decaplanina: N E > Amycolatopsis decaplanina DSM 44594: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AOHO01000068, CP009110
2 UniProt : M2Z3I8, A0A076MTH7
1 UniProt : M2Z3I8
1 Interpro : M2Z3I8
1 Prodom : M2Z3I8
1 Pfam : M2Z3I8
1 PIRSF : M2Z3I8
1 SUPERFAM : M2Z3I8
Sequence
Graphical view for this peptide sequence: 9pseu-m2z3i8
Colored MSA for NFM-deformylase (raw)
VTSGSVRLHVLDYGPGDGVPVIVLPGITSPAVTMDFVARELTDLVRPLVL
DVRGRGLSDDAADYDLASYAADVEAVVDGLGLREPILFGHSMGARIAARA
AATGRRLRGTVLADPPLSGPGRGPYPTTLDAFLGQLDQARRGTDADEVAR
SWPRWPRREQELRARWLSSCSRDAIVATHAGFESEDFFDDWPRVPAPTFF
LYGGASPVVTADGAAEAAERNPSAEFVEIPKAGHMIFWDEPEAALAALRE
ALRKLL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

VTSGSVRLHVLDYGPGDGVPVIVLPGITSPAVTMDFVARELTDLVRPLVL
DVRGRGLSDDAADYDLASYAADVEAVVDGLGLREPILFGHSMGARIAARA
AATGRRLRGTVLADPPLSGPGRGPYPTTLDAFLGQLDQARRGTDADEVAR
SWPRWPRREQELRARWLSSCSRDAIVATHAGFESEDFFDDWPRVPAPTFF
LYGGASPVVTADGAAEAAERNPSAEFVEIPKAGHMIFWDEPEAALAALRE
ALRKLL


Reference
    Title: Draft Genome Sequence of Amycolatopsis decaplanina Strain DSM 44594T
    Kaur N, Kumar S, Bala M, Raghava GP, Mayilraj S
    Ref: Genome Announc, 1:e0013813, 2013 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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