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Gene_locus Report for: 9rhob-q0fk06

Pelagibaca bermudensis HTCC2601 Esterase EstC, putative

Relationship
Family|HNLyase_Bact
Block| X
Position in NCBI Life Tree|Pelagibaca bermudensis HTCC2601
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Alphaproteobacteria: N E > Rhodobacterales: N E > Rhodobacteraceae: N E > Pelagibaca: N E > Pelagibaca bermudensis: N E > Pelagibaca bermudensis HTCC2601: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : AATQ01000044
1 UniProt : Q0FK06
1 UniProt : Q0FK06
1 Interpro : Q0FK06
1 Pfam : Q0FK06
1 PIRSF : Q0FK06
1 SUPERFAM : Q0FK06
Sequence
Peptide
Graphical view for this peptide sequence: 9rhob-q0fk06
Colored MSA for HNLyase_Bact (raw) 
MARFLLVHGASHGAWCWRDVVPALTALGHSATAIDLPSHGADPTPAAAIG
LQDYIDAILAALPEPAIVVAHSMAGVPATGAADRAPASVQRLVYLCAYRP
EDGDSVASLRRAQTEQPLLTAIRRDPDGTTFRFDAAMAPELFYHDCSPAD
RAFALDRLVPQAIRPQAEPVTLTGAIASVPRSYILCSEDRAIPPRDQQRM
AAALADDEVYERPWSHSPFLAHPEALASLLSGIAAP
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
MARFLLVHGASHGAWCWRDVVPALTALGHSATAIDLPSHGADPTPAAAIG
LQDYIDAILAALPEPAIVVAHSMAGVPATGAADRAPASVQRLVYLCAYRP
EDGDSVASLRRAQTEQPLLTAIRRDPDGTTFRFDAAMAPELFYHDCSPAD
RAFALDRLVPQAIRPQAEPVTLTGAIASVPRSYILCSEDRAIPPRDQQRM
AAALADDEVYERPWSHSPFLAHPEALASLLSGIAAP

Reference
    Title: Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera
    Thrash JC, Cho JC, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ
    Ref: Journal of Bacteriology, 192:5552, 2010 : PubMed

            


Other Papers

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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