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Gene_locus Report for: 9sphn-t0him9

Sphingobium lactosutens DS20. Uncharacterized protein

Relationship
Family|Duf_3089
Block| X
Position in NCBI Life Tree|Sphingobium lactosutens DS20
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Alphaproteobacteria: N E > Sphingomonadales: N E > Sphingomonadaceae: N E > Sphingobium: N E > Sphingobium lactosutens: N E > Sphingobium lactosutens DS20: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : ATDP01000078
1 UniProt : T0HIM9
1 UniProt : T0HIM9
1 Interpro : T0HIM9
1 Pfam : T0HIM9
1 PIRSF : T0HIM9
1 SUPERFAM : T0HIM9
Sequence
Graphical view for this peptide sequence: 9sphn-t0him9
Colored MSA for Duf_3089 (raw)
MFQKGGEKRVARKFLYVVAALVVLAIGASAVYALWGNALIRAVMVPREPF
EPLKPLPADAYADATMWIARPDIAKDNPALWTPAGTPVSKERGQAAVFFI
HPTSYITTFGSAHWNAALDNVEANATARRFVAGQASAFNGAGAIWAPRYR
QANYGAFLTQGPEGDKALAAAYGDVRQAFAAFLKANPEGPLILAAHSQGS
RHLLELLRNQVAGKPIADRIVAAYVVGWPVSVEADLPALGLPACARRDQA
HCIVSWQSYAEPADPSAVVDSFERKSGYTGRPRKGTHMLCTNPITGAFNG
QAPASANKGTLDAREEGQPPKLVPGIVPARCDTSGVLMIGEPVDMGPFTL
PGNNYHVYDYSLFWGNVREDALKRLAAFRGE
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MFQKGGEKRVARKFLYVVAALVVLAIGASAVYALWGNALIRAVMVPREPF
EPLKPLPADAYADATMWIARPDIAKDNPALWTPAGTPVSKERGQAAVFFI
HPTSYITTFGSAHWNAALDNVEANATARRFVAGQASAFNGAGAIWAPRYR
QANYGAFLTQGPEGDKALAAAYGDVRQAFAAFLKANPEGPLILAAHSQGS
RHLLELLRNQVAGKPIADRIVAAYVVGWPVSVEADLPALGLPACARRDQA
HCIVSWQSYAEPADPSAVVDSFERKSGYTGRPRKGTHMLCTNPITGAFNG
QAPASANKGTLDAREEGQPPKLVPGIVPARCDTSGVLMIGEPVDMGPFTL
PGNNYHVYDYSLFWGNVREDALKRLAAFRGE


Reference
    Title: Draft Genome Sequence of Sphingobium lactosutens Strain DS20T, Isolated from a Hexachlorocyclohexane Dumpsite
    Kumar R, Dwivedi V, Negi V, Khurana JP, Lal R
    Ref: Genome Announc, 1:, 2013 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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