Gene_locus Report for: actmd-c6w9s6 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR3971) Putative esterase
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Actinobacteria [phylum]: N E > Actinobacteria [class]: N E > Pseudonocardiales: N E > Pseudonocardiaceae: N E > Actinosynnema: N E > Actinosynnema mirum: N E 6_AlphaBeta_hydrolase :
actmd-c6w9w6 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Putative uncharacterized protein ,
actmd-c6wgs1 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Putative hydrolase protein ,
actmd-c6wla7 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Tetratricopeptide TPR_4 ,
actmd-c6ws38 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold-1 .
A85-Feruloyl-Esterase :
actmd-c6wq55 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Putative esterase .
A85-IroE-IroD-Fes-Yiel :
actmd-c6wee7 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Putative esterase .
A85-Mycolyl-transferase :
actmd-c6waq3 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR3971) Putative esterase ,
actmd-c6wnr8 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR3971) Putative esterase .
Acetyl-esterase_deacetylase :
actmd-c6we33 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Acetyl xylan esterase ,
actmd-c6wfj7 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Acetyl xylan esterase .
Bacterial_Est97 :
actmd-c6w881 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Putative uncharacterized protein .
Carb_B_Bacteria :
actmd-c6w9n7 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Carboxylesterase type B ,
actmd-c6wlp6 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Carboxylesterase type B .
CFTR-inhibitory-factor_Cif :
actmd-c6wg08 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein ,
actmd-c6whc5 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein ,
actmd-c6wrs4 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein .
Chlorophyllase :
actmd-c6wlx3 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971). Dienelactone hydrolase-like protein ,
actmd-c6wmy9 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971). Uncharacterized protein .
DPP4N_Peptidase_S9 :
actmd-c6w9l3 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Dipeptidyl-peptidase IV ,
actmd-c6wc84 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Peptidase S9 prolyl oligopeptidase active site domain protein .
Duf_1023 :
actmd-c6wiw2 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Putative uncharacterized protein ,
actmd-c6wqw5 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Putative uncharacterized protein .
Epoxide_hydrolase :
actmd-c6w899 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein ,
actmd-c6wf96 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein .
Est9X :
actmd-c6wre6 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Uncharacterized protein .
Glucuronoyl_esterase :
actmd-c6wh70 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Cellulose-binding family II .
Haloacetate_dehalogenase :
actmd-c6whm5 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein .
Haloperoxidase :
actmd-c6wh84 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein ,
actmd-c6wl14 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein .
HNLyase_Bact :
actmd-c6wer8 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Putative uncharacterized protein ,
actmd-c6wqd1 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Putative uncharacterized protein ,
actmd-c6wqs5 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein ,
actmd-c6ws01 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Putative uncharacterized protein .
Monoglyceridelipase_lysophospholip :
actmd-c6weq5 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein ,
actmd-c6wi63 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein .
NLS3-Tex30 :
actmd-c6wj22 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Uncharacterized protein .
Proline_iminopeptidase :
actmd-c6wnv1 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Proline-specific peptidase ,
actmd-c6wmc1 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971). Proline iminopeptidase ,
actmd-c6wn31 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971). Alpha/beta hydrolase fold protein ,
actmd-c6wqv1 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971). Proline iminopeptidase .
RsbQ-like :
actmd-c6wed0 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein .
UCP037442 :
actmd-c6wbu4 Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMR 3971) Alpha/beta hydrolase fold protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: actmd-c6w9s6 Colored MSA for A85-Est-Putative (raw)
MLDWSLLPGARLAVAVVVAGAVALVALLLGRARRWWSRRVPLAVGVALAL
TGVAWAVVTLSRLTAYPLPPVVWGSVLAGSLALALAGVRLAARPWRWRRL
VALPLALVVLLGAGQAVNAHFGQYPTPRSALGLPRADEVDLAEVPPVDDG
VVPAPEGASVASAWTPPADLPKQGVVAQVTIPGTVSGLAARPGWVWLPPA
YLVVPRPLLPVLVLVNGQPGAPGDWLAGGRLAERMNAYAAEHAGLAPVVV
VPDDLGGSSVGNPMCLDSALGNARTYLVRDVPDWITSTLRVDPDPAAWAF
GGFSHGGTCAVQMAVTATDRYPTFLSISGEDEPRRGTRQQTVADAFGGDE
AAFRAVNPRDVLAGARFPQVAGRFVVGEGDRDFRAQGERMFAAARDAGMD
VELVVLPGQHGWEVWGPGLTRWLPWLGDRLRLTR
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M L D W S L L P G A R L A V A V V V A G A V A L V A L L L G R A R R W W S R R V P L A V G V A L A L T G V A W A V V T L S R L T A Y P L P P V V W G S V L A G S L A L A L A G V R L A A R P W R W R R L V A L P L A L V V L L G A G Q A V N A H F G Q Y P T P R S A L G L P R A D E V D L A E V P P V D D G V V P A P E G A S V A S A W T P P A D L P K Q G V V A Q V T I P G T V S G L A A R P G W V W L P P A Y L V V P R P L L P V L V L V N G Q P G A P G D W L A G G R L A E R M N A Y A A E H A G L A P V V V V P D D L G G S S V G N P M C L D S A L G N A R T Y L V R D V P D W I T S T L R V D P D P A A W A F G G F S H G G T C A V Q M A V T A T D R Y P T F L S I S G E D E P R R G T R Q Q T V A D A F G G D E A A F R A V N P R D V L A G A R F P Q V A G R F V V G E G D R D F R A Q G E R M F A A A R D A G M D V E L V V L P G Q H G W E V W G P G L T R W L P W L G D R L R L T R
Reference
Title: Complete genome sequence of Actinosynnema mirum type strain (101)Land M , Lapidus A , Mayilraj S , Chen F , Copeland A , Del Rio TG , Nolan M , Lucas S , Tice H and Klenk HP <25 more author(s)> Land M , Lapidus A , Mayilraj S , Chen F , Copeland A , Del Rio TG , Nolan M , Lucas S , Tice H , Cheng JF , Chertkov O , Bruce D , Goodwin L , Pitluck S , Rohde M , Goker M , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Hauser L , Chang YJ , Jeffries CC , Brettin T , Detter JC , Han C , Chain P , Tindall BJ , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP (- 25) Ref: Stand Genomic Sci, 1 :46, 2009 : PubMed Abstract ESTHER: Land_2009_Stand.Genomic.Sci_1_46 PubMedSearch: Land 2009 Stand.Genomic.Sci 1 46 PubMedID: 21304636 Gene_locus related to this paper: actmd-c6w9l3 ,
actmd-c6w9n7 ,
actmd-c6w9s6 ,
actmd-c6w9w6 ,
actmd-c6w881 ,
actmd-c6w899 ,
actmd-c6waq3 ,
actmd-c6wbu4 ,
actmd-c6wc84 ,
actmd-c6we33 ,
actmd-c6wed0 ,
actmd-c6wee7 ,
actmd-c6weq5 ,
actmd-c6wer8 ,
actmd-c6wf96 ,
actmd-c6wfj7 ,
actmd-c6wg08 ,
actmd-c6wgs1 ,
actmd-c6wh70 ,
actmd-c6wh84 ,
actmd-c6whc5 ,
actmd-c6whm5 ,
actmd-c6wi63 ,
actmd-c6wiw2 ,
actmd-c6wl14 ,
actmd-c6wla7 ,
actmd-c6wlp6 ,
actmd-c6wnr8 ,
actmd-c6wnv1 ,
actmd-c6wq55 ,
actmd-c6wqd1 ,
actmd-c6wqs5 ,
actmd-c6wqw5 ,
actmd-c6wrs4 ,
actmd-c6ws01 ,
actmd-c6ws38 ,
actmd-c6wre6 ,
actmd-c6wj22 ,
actmd-c6wmc1 ,
actmd-c6wn31 ,
actmd-c6wqv1 ,
actmd-c6wlx3 ,
actmd-c6wmy9 Abstract
Actinosynnema mirum Hasegawa et al. 1978 is the type species of the genus, and is of phylogenetic interest because of its central phylogenetic location in the Actino-synnemataceae, a rapidly growing family within the actinobacterial suborder Pseudo-nocardineae. A. mirum is characterized by its motile spores borne on synnemata and as a producer of nocardicin antibiotics. It is capable of growing aerobically and under a moderate CO(2) atmosphere. The strain is a Gram-positive, aerial and substrate mycelium producing bacterium, originally isolated from a grass blade collected from the Raritan River, New Jersey. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first complete genome sequence of a member of the family Actinosynnemataceae, and only the second sequence from the actinobacterial suborder Pseudonocardineae. The 8,248,144 bp long single replicon genome with its 7100 protein-coding and 77 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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