Gene_Locus Report

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Gene_locus Report for: ailme-g1mdr5

Ailuropoda melanoleuca (Giant panda) Uncharacterized protein

Relationship
Family|Carb_B_Chordata
Block| C
Position in NCBI Life Tree|Ailuropoda melanoleuca
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Sarcopterygii: N E > Dipnotetrapodomorpha: N E > Tetrapoda: N E > Amniota: N E > Mammalia: N E > Theria: N E > Eutheria: N E > Boreoeutheria: N E > Laurasiatheria: N E > Carnivora: N E > Caniformia: N E > Ursidae: N E > Ailuropoda: N E > Ailuropoda melanoleuca: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : ACTA01064786, ACTA01072786
1 UniProt : G1MDR5
1 UniProt : G1MDR5
1 Interpro : G1MDR5
1 Prodom : G1MDR5
1 Pfam : G1MDR5
1 PIRSF : G1MDR5
1 SUPERFAM : G1MDR5
Sequence
Graphical view for this peptide sequence: ailme-g1mdr5
Colored MSA for Carb_B_Chordata (raw)
MWLIALVLTSLTTPMAWGGRPSSPPVVDTVQGKVLGKYVSLEGFAQPVAV
FLGVPFARPPLGSLRFAPPQPAEPWNFVKNTTSYPPMCSQDAVAGQVLSE
LFTNRKENIALKFSEDCLYLNIYTPADLTKKSRLPVMVWIHGGGLVGGAS
TYDGLALSAHENVVVVAIQYRLGIWGFFSTGDEHSRGNWGHLDQLAALRW
VQENIANFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA
LTAALVKKDMKDTAQQIAVFAGCKTTTSAVLVHCLRQKTEDELLETSLKL
KFFALDLFGDPRENHPFLPTVVDGVLLPKMPEEILAEKKFNSVPYIIGIN
KQEFGWILPMMMGYPLSEGKLDQKTATSLLWKSYSVVRVPEELTPLATEK
YLGGTDDPVKKKDLFLDMLGDLVFGVPSVTVARHHRDAGAPTYMYEFQYH
PSFSSDMKPKTVLGDHGDELFSVFGAPFLKGGASDEEVRLSKMVMKLWAN
FARSGNPNGEGLPSWPAYDQKEGYLQIGATTQPAQKLKDKEVAFWTELLA
KGAEEKPPHTEHVEL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MWLIALVLTSLTTPMAWGGRPSSPPVVDTVQGKVLGKYVSLEGFAQPVAV
FLGVPFARPPLGSLRFAPPQPAEPWNFVKNTTSYPPMCSQDAVAGQVLSE
LFTNRKENIALKFSEDCLYLNIYTPADLTKKSRLPVMVWIHGGGLVGGAS
TYDGLALSAHENVVVVAIQYRLGIWGFFSTGDEHSRGNWGHLDQLAALRW
VQENIANFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA
LTAALVKKDMKDTAQQIAVFAGCKTTTSAVLVHCLRQKTEDELLETSLKL
KFFALDLFGDPRENHPFLPTVVDGVLLPKMPEEILAEKKFNSVPYIIGIN
KQEFGWILPMMMGYPLSEGKLDQKTATSLLWKSYSVVRVPEELTPLATEK
YLGGTDDPVKKKDLFLDMLGDLVFGVPSVTVARHHRDAGAPTYMYEFQYH
PSFSSDMKPKTVLGDHGDELFSVFGAPFLKGGASDEEVRLSKMVMKLWAN
FARSGNPNGEGLPSWPAYDQKEGYLQIGATTQPAQKLKDKEVAFWTELLA
KGAEEKPPHTEHVEL


Reference
    Title: The sequence and de novo assembly of the giant panda genome
    Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B and Yang H <103 more author(s)>
    Ref: Nature, 463:311, 2010 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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