arall-d7lst0

 
Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Pectinacetylesterase family protein

Relationship
Block X
Arabidopsis lyrata subsp. lyrata position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis lyrata: N E > Arabidopsis lyrata subsp. lyrata: N E

Molecular evidence
Database
No mutation
No structure
No kinetic



1 Genbank : GL348717
2 UniProt : D7LST0, D7LSM5
2 UniProtTrembl : D7LST0, D7LSM5
2 Interpro : D7LST0, D7LSM5
2 Prodom : D7LST0, D7LSM5
2 Pfam : D7LST0, D7LSM5
2 PIRSF : D7LST0, D7LSM5
2 SUPERFAM : D7LST0, D7LSM5
2 QuickSwissBlast : D7LST0, D7LSM5
 
Sequence
Graphical view for this peptide sequence: arall-d7lst0
Colored MSA for Pectinacetylesterase-Notum (raw)
MKSVLLWVAVVVCLLCSVTAVIRSGSSDGFGKPIDTDTAISLLEYKLMAP
SVPMVPLTLIRGADSKGAVCLDGTLPGYHLDRGFGSGANSWLIQLEGGGW
CNNHRSCVYRKTSRRGSSKFMEKALAFTGILSNKSEENPDFFNWNRIKLR
YCDGASFSGDSQDESSQLFYRGQRIWQVAMEEFLSLGMKQANQALLSGCS
AGGLASILHCDEFRELLPSSTKVKCLSDAGMFLDAVDVSGGHSLRNMFQG
VVTVQNLQKDLSSTCTNHLDPTSCFFPQNLVSDIKTPMFLLNTAYDSWQI
QESLAPPTADPGGIWKACKSDHSRCNSSQIQFFEEFRTQMVLAVNSFSNS
DQNGLYINSCFAHCQTERQDTWFAQDSPQLNGKRVAESVGDWYFDRANNV
KAIDCPYPCDTTCHNLIFE
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MKSVLLWVAVVVCLLCSVTAVIRSGSSDGFGKPIDTDTAISLLEYKLMAP
SVPMVPLTLIRGADSKGAVCLDGTLPGYHLDRGFGSGANSWLIQLEGGGW
CNNHRSCVYRKTSRRGSSKFMEKALAFTGILSNKSEENPDFFNWNRIKLR
YCDGASFSGDSQDESSQLFYRGQRIWQVAMEEFLSLGMKQANQALLSGCS
AGGLASILHCDEFRELLPSSTKVKCLSDAGMFLDAVDVSGGHSLRNMFQG
VVTVQNLQKDLSSTCTNHLDPTSCFFPQNLVSDIKTPMFLLNTAYDSWQI
QESLAPPTADPGGIWKACKSDHSRCNSSQIQFFEEFRTQMVLAVNSFSNS
DQNGLYINSCFAHCQTERQDTWFAQDSPQLNGKRVAESVGDWYFDRANNV
KAIDCPYPCDTTCHNLIFE

no DNA




Reference
    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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