arath-AT2G44970

 
Arabidopsis thaliana (Mouse-ear cress) hypothetical protein

Comment
closer to bacterial lipase than to anything else


Relationship
Block X
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E

Molecular evidence
Database
No mutation
No structure
No kinetic



>3 Genbank links 1 more: BT001943, AY074267, AC002388
3 UniProtTrembl : Q84WV5, Q8VY25, O22155
3 Interpro : Q84WV5, Q8VY25, O22155
3 Prodom : Q84WV5, Q8VY25, O22155
3 Pfam : Q84WV5, Q8VY25, O22155
3 PIRSF : Q84WV5, Q8VY25, O22155
3 SUPERFAM : Q84WV5, Q8VY25, O22155
3 QuickSwissBlast : Q84WV5, Q8VY25, O22155
1 Tair database : AT2G44970
 
Sequence
Graphical view for this peptide sequence: arath-AT2G44970
Colored MSA for 6_AlphaBeta_hydrolase (raw)
MFRFDPTFLKLQKLIKMGEAGQSRDGESVTPLVGGGNGDNAVAPQVFNSL
PALNEAASYITQATSYLGSCFSDYSVEYGGKDTISHPHELLRSTSGVDGN
SPVSVCISPGERFSTSSEASTSDANSPSRESTEILPQATNAIVTSNRLNL
NGISMFQGLIERARRTVRGSADDIGWLQRAPEMPPVEDGTDRFNKILEDI
GHGVHRLPNTVVYLLVPGLFSNHGPLYFVDTKTKFSKMGLACHIAKIHSE
SSVEKNAREIKEYIEELCWGSNKRVLLLGHSKGGIDAAAALSLYWPELKD
KVAGLVLAQSPYGGSPIATDILREGQLGDYVNLRKMMEILISKVIKGDIQ
ALEDLTYERRKEFLKNHPLPRELPTVSFRTEASISPAVLSTLSHVAHAEL
PLTNQAAKLPVVMPLGAAMAACAQLLQVRYGEKSDGLVTCCDAEVPGSVV
VRPKRKLDHAWMVYSSLNEVPLEADAAQVCEALLTLLVQVEQERQQKLAT
KID
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MFRFDPTFLKLQKLIKMGEAGQSRDGESVTPLVGGGNGDNAVAPQVFNSL
PALNEAASYITQATSYLGSCFSDYSVEYGGKDTISHPHELLRSTSGVDGN
SPVSVCISPGERFSTSSEASTSDANSPSRESTEILPQATNAIVTSNRLNL
NGISMFQGLIERARRTVRGSADDIGWLQRAPEMPPVEDGTDRFNKILEDI
GHGVHRLPNTVVYLLVPGLFSNHGPLYFVDTKTKFSKMGLACHIAKIHSE
SSVEKNAREIKEYIEELCWGSNKRVLLLGHSKGGIDAAAALSLYWPELKD
KVAGLVLAQSPYGGSPIATDILREGQLGDYVNLRKMMEILISKVIKGDIQ
ALEDLTYERRKEFLKNHPLPRELPTVSFRTEASISPAVLSTLSHVAHAEL
PLTNQAAKLPVVMPLGAAMAACAQLLQVRYGEKSDGLVTCCDAEVPGSVV
VRPKRKLDHAWMVYSSLNEVPLEADAAQVCEALLTLLVQVEQERQQKLAT
KID

no DNA




Reference
    Title: Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana
    Lin X, Kaul S, Rounsley S, Shea TP, Benito MI, Town CD, Fujii CY, Mason T, Bowman CL and Venter JC <27 more author(s)>
    Ref: Nature, 402:761, 1999 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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