arath-AT5G19050

 
Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) hypothetical 38.4 kda protein protein at5g19050

Relationship
Family Duf_1749
Block X
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



>3 Genbank links 1 more: AJ319539, AY074297, AY142604
2 UniProt : D7LYK1, Q94IU8
2 UniProtTrembl : Q94IU8, D7LYK1
2 Interpro : Q94IU8, D7LYK1
2 Prodom : Q94IU8, D7LYK1
2 Pfam : Q94IU8, D7LYK1
2 PIRSF : Q94IU8, D7LYK1
2 SUPERFAM : Q94IU8, D7LYK1
2 QuickSwissBlast : Q94IU8, D7LYK1
1 Tair database : AT5G19050
 
Sequence
Graphical view for this peptide sequence: arath-AT5G19050
Colored MSA for Duf_1749 (raw)
MSLSLPSSSAAAAAASTSGSSSSPAAASSSSTTTSWFSGIVRGRGDKSGT
AKLSKSSSMAGGGSGSGDYGGPIKGKNQFRGVLFKYGPKSIQVAFKTGEY
KQQVIFIGGLTDGLLATDYLEPLAIALDKEKWSLVQLLMSSSYSGFGTSS
LKQDAQEIDQLINHLINKENSEGVVLLGHSTGCQDIVYYMGTNAACSRAV
RAAILQAPVSDREYKATLPETPAMIDLAANMIKEGRGEELMPREADPCAP
ISAYRYHSLCAYMGDDDMFSSDLSDDQLKTRLGHMANTPCQVIFSMGDEY
VPDYVDKKALVNRLSKAMGGAEKVEIEHGNHSLSNRVHEAVQAIIGFVKR
EGPSGWDDPWS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSLSLPSSSAAAAAASTSGSSSSPAAASSSSTTTSWFSGIVRGRGDKSGT
AKLSKSSSMAGGGSGSGDYGGPIKGKNQFRGVLFKYGPKSIQVAFKTGEY
KQQVIFIGGLTDGLLATDYLEPLAIALDKEKWSLVQLLMSSSYSGFGTSS
LKQDAQEIDQLINHLINKENSEGVVLLGHSTGCQDIVYYMGTNAACSRAV
RAAILQAPVSDREYKATLPETPAMIDLAANMIKEGRGEELMPREADPCAP
ISAYRYHSLCAYMGDDDMFSSDLSDDQLKTRLGHMANTPCQVIFSMGDEY
VPDYVDKKALVNRLSKAMGGAEKVEIEHGNHSLSNRVHEAVQAIIGFVKR
EGPSGWDDPWS

no DNA




References
    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            

    Title: Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned P1 and TAC clones.
    Asamizu E, Sato S, Kaneko T, Nakamura Y, Kotani H, Miyajima N, Tabata S
    Ref: DNA Research, 5:379, 1998 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
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