Gene_Locus Report

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Gene_locus Report for: arath-AT5G22460

Arabidopsis thaliana (Mouse-ear cress) gb|aaf31728.1 (hypothetical protein)

Relationship
Family|6_AlphaBeta_hydrolase
Block| X
Position in NCBI Life Tree|Arabidopsis thaliana
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : AB007651, AY050804, AY096630
1 UniProt : Q9FMQ5
1 Interpro : Q9FMQ5
1 Prodom : Q9FMQ5
1 Pfam : Q9FMQ5
1 PIRSF : Q9FMQ5
1 SUPERFAM : Q9FMQ5
1 Tair database : AT5G22460
Sequence
Graphical view for this peptide sequence: arath-AT5G22460
Colored MSA for 6_AlphaBeta_hydrolase (raw)
MMFSVTVAILVCLIGYIYRSFKPPPPRICGHPNGPPVTSPRIKLSDGRYL
AYRESGVDRDNANYKIIVVHGFNSSKDTEFPIPKDVIEELGIYFVFYDRA
GYGESDPHPSRTVKSEAYDIQELADKLKIGPKFYVLGISLGAYSVYSCLK
YIPHRLAGAVLMVPFVNYWWTKVPQEKLSKALELMPKKDQWTFKVAHYVP
WLLYWWLTQKLFPSSSMVTGNNALCSDKDLVVIKKKMENPRPGLEKVRQQ
GDHECLHRDMIAGFATWEFDPTELENPFAEGEGSVHVWQGMEDRIIPYEI
NRYISEKLPWIKYHEVLGYGHLLNAEEEKCKDIIKALLVN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MMFSVTVAILVCLIGYIYRSFKPPPPRICGHPNGPPVTSPRIKLSDGRYL
AYRESGVDRDNANYKIIVVHGFNSSKDTEFPIPKDVIEELGIYFVFYDRA
GYGESDPHPSRTVKSEAYDIQELADKLKIGPKFYVLGISLGAYSVYSCLK
YIPHRLAGAVLMVPFVNYWWTKVPQEKLSKALELMPKKDQWTFKVAHYVP
WLLYWWLTQKLFPSSSMVTGNNALCSDKDLVVIKKKMENPRPGLEKVRQQ
GDHECLHRDMIAGFATWEFDPTELENPFAEGEGSVHVWQGMEDRIIPYEI
NRYISEKLPWIKYHEVLGYGHLLNAEEEKCKDIIKALLVN


Reference
    Title: Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence features of the regions of 1,191,918 bp covered by seventeen physically assigned P1 clones
    Nakamura Y, Sato S, Kaneko T, Kotani H, Asamizu E, Miyajima N, Tabata S
    Ref: DNA Research, 4:401, 1997 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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