Gene_Locus Report

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Gene_locus Report for: arath-AT5G24230

Arabidopsis thaliana (Mouse-ear cress) hypothetical protein (at5g24230)

Relationship
Family|Lipase_3
Block| L
Position in NCBI Life Tree|Arabidopsis thaliana
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : AK119103, BT005327, AB006701
2 UniProt : Q9FNF9, Q8GW37
2 UniProt : Q8GW37, Q9FNF9
2 Interpro : Q8GW37, Q9FNF9
2 Prodom : Q8GW37, Q9FNF9
2 Pfam : Q8GW37, Q9FNF9
2 PIRSF : Q8GW37, Q9FNF9
2 SUPERFAM : Q8GW37, Q9FNF9
1 Tair database : AT5G24230
Sequence
Graphical view for this peptide sequence: arath-AT5G24230
Colored MSA for Lipase_3 (raw)
MEEEDDEVMVREGLMASQREIFSISGPIHLTSIDWNNSYHRTSVASCLVQ
AVYTLERDRQQNRIGLKSQANHWWEFFNFTLAETLIDDSDGSIYGAVFEY
KHFFSYNYHHTPHSKPPPRHVIAFRGTILKPHSRSRDLKLDLRCIRDSLH
DSTRFVHAIQVIQSAVAKTGNAAVWLAGHSLGAAVALLAGKIMTRSGFPL
ESYLFNPPFSSIPIEKLVKSEKLKHGVRFAGSLVKAGVAIAVKGRHHNKG
QEDDSFMKLASWIPYLYLNPLDTICSEYIGYFKHRNKMFEIGAGKIERIA
TRNSLRSLLSGGGGGGSSSDSSSEPLHLLPSAYMTINASKSPNFKRAHGI
HQWWDPMFNGEYVLHQFNN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MEEEDDEVMVREGLMASQREIFSISGPIHLTSIDWNNSYHRTSVASCLVQ
AVYTLERDRQQNRIGLKSQANHWWEFFNFTLAETLIDDSDGSIYGAVFEY
KHFFSYNYHHTPHSKPPPRHVIAFRGTILKPHSRSRDLKLDLRCIRDSLH
DSTRFVHAIQVIQSAVAKTGNAAVWLAGHSLGAAVALLAGKIMTRSGFPL
ESYLFNPPFSSIPIEKLVKSEKLKHGVRFAGSLVKAGVAIAVKGRHHNKG
QEDDSFMKLASWIPYLYLNPLDTICSEYIGYFKHRNKMFEIGAGKIERIA
TRNSLRSLLSGGGGGGSSSDSSSEPLHLLPSAYMTINASKSPNFKRAHGI
HQWWDPMFNGEYVLHQFNN


Reference
    Title: Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones
    Kotani H, Nakamura Y, Sato S, Kaneko T, Asamizu E, Miyajima N, Tabata S
    Ref: DNA Research, 4:291, 1997 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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