Gene_Locus Report
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Gene_locus Report for: arath-At3g27325

Arabidopsis thaliana (Mouse-ear cress) At3g27325 similarity to negative regulator of vesicle formation

Comment
only n-term Pfam A PGAP1 109 384


Relationship
Family|PGAP1
Block| X
Position in NCBI Life Tree|Arabidopsis thaliana
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AB024028, AP000381
1 UniProt : Q9LTZ8
1 Interpro : Q9LTZ8
1 Pfam : Q9LTZ8
1 PIRSF : Q9LTZ8
1 SUPERFAM : Q9LTZ8
1 Tair database : At3g27325
Sequence
Peptide
Graphical view for this peptide sequence: arath-At3g27325
Colored MSA for PGAP1 (raw) 
MEDFGDTGLLIEYEMIFMQIYTIEMRDVRFAMSIRPRLRIVGVLILAAWI
GLVALFGLLKPIKNGCTMTYMYPTYIPISVTDDTTPGRYGLYLYHEGWRK
IDFKEHLKKLSGVPVLFIPGNAGSYKQVRSVAAESDRAFQGGPFERTFYQ
EASLLRGGGADTESVDYDLPSQYSNRLDWFAVDLEGEHSAMDGRILEEHT
EYVVYAIHRILDQYKESHDTREREGAAASSKLPHDVILVGHSMGGFVARA
AAVHPRLRKSAVQTILTLSSPHQSPPLALQPSLGHYFAQVNREWKKGYEV
QTSPGGNYVSDPLLSGVVVVSISGGYNDYQVRSKLESLDGIVPSSHGFMI
SSTSMTNVWLSMEHQAILWCNQLVVQVSHTLLSMVDSKTNQPFSDTDKRL
WVLTRMLQSALAQSFNGMTP
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
MEDFGDTGLLIEYEMIFMQIYTIEMRDVRFAMSIRPRLRIVGVLILAAWI
GLVALFGLLKPIKNGCTMTYMYPTYIPISVTDDTTPGRYGLYLYHEGWRK
IDFKEHLKKLSGVPVLFIPGNAGSYKQVRSVAAESDRAFQGGPFERTFYQ
EASLLRGGGADTESVDYDLPSQYSNRLDWFAVDLEGEHSAMDGRILEEHT
EYVVYAIHRILDQYKESHDTREREGAAASSKLPHDVILVGHSMGGFVARA
AAVHPRLRKSAVQTILTLSSPHQSPPLALQPSLGHYFAQVNREWKKGYEV
QTSPGGNYVSDPLLSGVVVVSISGGYNDYQVRSKLESLDGIVPSSHGFMI
SSTSMTNVWLSMEHQAILWCNQLVVQVSHTLLSMVDSKTNQPFSDTDKRL
WVLTRMLQSALAQSFNGMTP

Reference
    Title: Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones
    Sato S, Nakamura Y, Kaneko T, Katoh T, Asamizu E, Tabata S
    Ref: DNA Research, 7:131, 2000 : PubMed

            


Other Papers

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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