arath-At5g11790

 
Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) hypothetical 40.2 kda protein At5g11790, T22P22_180 NDL2

Comment
Involved in a signaling pathway that modulates root auxin transport and auxin gradients. Acts partially by positively regulating the auxin carrier PIN2 and AUX1. Acts, together with GB1 as positive regulator of meristem initiation and branching. GB1 and NDL2 positively regulate basipetal inflorescence auxin transport and modulate MAX2 expression in shoots, which regulates organ and lateral meristem formation by the establishment and maintenance of auxin gradients. Other strains: Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Ndr family protein Other strains: Arabis alpina; Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)


Relationship
Family Ndr_family
Block X
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



>3 Genbank links 5 more: AL163814, AF361823, AY059161
>3 UniProt links 1 more: Q9LYF2, Q9ASU8, C0Z3F8
>3 UniProtTrembl links 5 more: Q9LYF2, Q9ASU8, C0Z3F8
>3 Interpro links 5 more: Q9LYF2, Q9ASU8, C0Z3F8
>3 Prodom links 5 more: Q9LYF2, Q9ASU8, C0Z3F8
>3 Pfam links 5 more: Q9LYF2, Q9ASU8, C0Z3F8
>3 PIRSF links 5 more: Q9LYF2, Q9ASU8, C0Z3F8
>3 SUPERFAM links 5 more: Q9LYF2, Q9ASU8, C0Z3F8
>3 QuickSwissBlast links 5 more: Q9LYF2, Q9ASU8, C0Z3F8
1 Tair database : At5g11790
 
Sequence
Graphical view for this peptide sequence: arath-At5g11790
Colored MSA for Ndr_family (raw)
MADSSDSVSIDMEALSLGGQEHLVETTYGPVCVAVCGDPDKPALITYPDI
ALNYMFCFQGLLFCPEASSLLLHNFCIYHISPLGHEVGNWTLIVYKLLYV
SESLQLGAPMISVDAPLLSADDLADQIVEVLNYFGLGAVMCMGVTAGAYI
LTLFAMKYRQRVLGLILVSPLCQAPSWSEWLCNKVMSNLLYYYGTCGVVK
EMLLKRYFSKEVRGNGHVPESDIVQECRRLLSERQSTNVWRFLEAINGRV
DLSEGLRKLQCRTLIFIGENSAYHSEAVHMTTKLDRRYGALVEGSGSLVS
EEQPQAMIIPMEYFLMGYGLYRPTQSVSPRSPLSPTRISPELLSPENMGL
KLKPIKTRLAL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MADSSDSVSIDMEALSLGGQEHLVETTYGPVCVAVCGDPDKPALITYPDI
ALNYMFCFQGLLFCPEASSLLLHNFCIYHISPLGHEVGNWTLIVYKLLYV
SESLQLGAPMISVDAPLLSADDLADQIVEVLNYFGLGAVMCMGVTAGAYI
LTLFAMKYRQRVLGLILVSPLCQAPSWSEWLCNKVMSNLLYYYGTCGVVK
EMLLKRYFSKEVRGNGHVPESDIVQECRRLLSERQSTNVWRFLEAINGRV
DLSEGLRKLQCRTLIFIGENSAYHSEAVHMTTKLDRRYGALVEGSGSLVS
EEQPQAMIIPMEYFLMGYGLYRPTQSVSPRSPLSPTRISPELLSPENMGL
KLKPIKTRLAL

no DNA




References
    Title: N-MYC down-regulated-like proteins regulate meristem initiation by modulating auxin transport and MAX2 expression
    Mudgil Y, Ghawana S, Jones AM
    Ref: PLoS ONE, 8:e77863, 2013 : PubMed

            

    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            

    Title: Arabidopsis N-MYC DOWNREGULATED-LIKE1, a positive regulator of auxin transport in a G protein-mediated pathway
    Mudgil Y, Uhrig JF, Zhou J, Temple B, Jiang K, Jones AM
    Ref: Plant Cell, 21:3591, 2009 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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