arath-At5g42930

 
Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) At5g42930 chromosome 5, p1 clone:mbd2

Relationship
Block L
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



>3 Genbank links 1 more: AB008264, NP_199107.5, AED94889
3 UniProt : Q9FMM5, D7MQR9, F4K4J2
>3 UniProtTrembl links 4 more: Q9FMM5, D7MQR9, F4K4J2
>3 Interpro links 4 more: Q9FMM5, D7MQR9, F4K4J2
>3 Prodom links 4 more: Q9FMM5, D7MQR9, F4K4J2
>3 Pfam links 4 more: Q9FMM5, D7MQR9, F4K4J2
>3 PIRSF links 4 more: Q9FMM5, D7MQR9, F4K4J2
>3 SUPERFAM links 4 more: Q9FMM5, D7MQR9, F4K4J2
>3 QuickSwissBlast links 4 more: Q9FMM5, D7MQR9, F4K4J2
1 Tair database : At5g42930
 
Sequence
Graphical view for this peptide sequence: arath-At5g42930
Colored MSA for Triacylglycerol-lipase-OBL1-like (raw)
MFLLNVAQMDLLGFYSCWNGYQKQRSTEVIVIKDTSTDPNLIIVSFRGTD
PFDADDWCTDLDLSWYEVKNVGKIHGGFMKALGLQKEGWPKEVNLDETQN
ATTLYAYYTVRRHLKEILDQNPTSKFILTGHSLGGALAILFTAVLVMHDE
EQMLERLEGVYTFGQPRVGDEEFGNFMKDSLKKFDVKYERYVYCNDMVPR
LPFDDKTLMFKHFGACLYYDSFYKGKVTYLTRILIKF
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MFLLNVAQMDLLGFYSCWNGYQKQRSTEVIVIKDTSTDPNLIIVSFRGTD
PFDADDWCTDLDLSWYEVKNVGKIHGGFMKALGLQKEGWPKEVNLDETQN
ATTLYAYYTVRRHLKEILDQNPTSKFILTGHSLGGALAILFTAVLVMHDE
EQMLERLEGVYTFGQPRVGDEEFGNFMKDSLKKFDVKYERYVYCNDMVPR
LPFDDKTLMFKHFGACLYYDSFYKGKVTYLTRILIKF

no DNA




References
    Title: Transcriptome Analysis of the Response to NaCl in Suaeda maritima Provides an Insight into Salt Tolerance Mechanisms in Halophytes
    Gharat SA, Parmar S, Tambat S, Vasudevan M, Shaw BP
    Ref: PLoS ONE, 11:e0163485, 2016 : PubMed

            

    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            

    Title: Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence features of the regions of 1,191,918 bp covered by seventeen physically assigned P1 clones
    Nakamura Y, Sato S, Kaneko T, Kotani H, Asamizu E, Miyajima N, Tabata S
    Ref: DNA Research, 4:401, 1997 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
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