Gene_Locus Report

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Gene_locus Report for: arath-F12A4.4

Arabidopsis thaliana (Mouse-ear cress); Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Carboxymethylenebutenolidase homolog

Comment
Other strains: Arabidopsis thaliana (Mouse-ear cress); Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)


Relationship
Family|CMBL
Block| X
Position in NCBI Life Tree|Arabidopsis thaliana
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 1 more: AC023064, AY085440, GL348713
2 UniProt : Q67XM5, D7KL77
>3 UniProt links 1 more: Q67XM5, Q9C8P5, Q8LEG0
>3 Interpro links 1 more: Q67XM5, Q9C8P5, Q8LEG0
>3 Prodom links 1 more: Q67XM5, Q9C8P5, Q8LEG0
>3 Pfam links 1 more: Q67XM5, Q9C8P5, Q8LEG0
>3 PIRSF links 1 more: Q67XM5, Q9C8P5, Q8LEG0
>3 SUPERFAM links 1 more: Q67XM5, Q9C8P5, Q8LEG0
1 Tair database : At1g35420
Sequence
Graphical view for this peptide sequence: arath-F12A4.4
Colored MSA for CMBL (raw)
MAASLASLSSLAKAGAPRSLFNRHGSHRLPPPQIIPLASSIKKHITTSFY
RRGSSLKNIYALETSDGAINVEVDDDEEEEACELVNGTEVSVDGVEGYLL
TAVKNNNGTGLLLLSDVFGFQDSATRDFAYRVACNGYNVLVPDLFRGDPW
SKNRPKSEYEEWRRGHDPNRIRQDTTTFTKWMVEEFAAAGISKKLGVMGF
CFGGGRVVDVLATDESGYFSTGVSFYGTRIDSAVAGDVKVPVLFIAGDRD
PLCEVKGLYEIEEKIGEGSKVVVYEGRGHGFVHRPETPEDDRDAEEAFAL
MRNWLHHHLI
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MAASLASLSSLAKAGAPRSLFNRHGSHRLPPPQIIPLASSIKKHITTSFY
RRGSSLKNIYALETSDGAINVEVDDDEEEEACELVNGTEVSVDGVEGYLL
TAVKNNNGTGLLLLSDVFGFQDSATRDFAYRVACNGYNVLVPDLFRGDPW
SKNRPKSEYEEWRRGHDPNRIRQDTTTFTKWMVEEFAAAGISKKLGVMGF
CFGGGRVVDVLATDESGYFSTGVSFYGTRIDSAVAGDVKVPVLFIAGDRD
PLCEVKGLYEIEEKIGEGSKVVVYEGRGHGFVHRPETPEDDRDAEEAFAL
MRNWLHHHLI


References
    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            

    Title: Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
    Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R and Davis RW <79 more author(s)>
    Ref: Nature, 408:816, 2000 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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