Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: arath-F1O17.5

Arabidopsis thaliana (Mouse-ear cress) hypothetical AT1G74280 42.3 kda protein

Comment
Trembl Q8LFG4 some aa diff


Relationship
Family|6_AlphaBeta_hydrolase
Block| X
Position in NCBI Life Tree|Arabidopsis thaliana
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : AC020579
2 UniProt : Q9C913, Q8LFG4
2 Interpro : Q9C913, Q8LFG4
2 Prodom : Q9C913, Q8LFG4
2 Pfam : Q9C913, Q8LFG4
2 PIRSF : Q9C913, Q8LFG4
2 SUPERFAM : Q9C913, Q8LFG4
1 Tair database : AT1G74280
Sequence
Graphical view for this peptide sequence: arath-F1O17.5
Colored MSA for 6_AlphaBeta_hydrolase (raw)
MTRDSSRNSSLKPWPRKKFLFPSVVIVIVGIIVAFTYQSKLKPPPPKLCG
SSGGPPITAPRIKLQDGRYLAYKEHGLPREKANRKIVFIHGSDCCRHDAV
FATLLSPDLVEELGVYMVSFDRPGYCESDPHPSRTPRSLVSDIEELADQL
SLGSKFYVLGYSMGGQAAWGCLKYIPHRLAGVTLVAPVVNYYWKNLPLNV
STEGFNFQQKRDQLAVRVAHYTPWLIYWWNTQKWFPGSSIANRDHSLLAQ
PDKDIISKLGSSRKPHWAEVRQQGIHESINRDMIVGFGNWEFGPLDLENP
FLNKEGSVHLWQGDEDMLVPAKLQRYLAHQLPWVHYHEVPRSGHFFHYTK
GVVDDIVKSLLTSDVRASRVCI
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MTRDSSRNSSLKPWPRKKFLFPSVVIVIVGIIVAFTYQSKLKPPPPKLCG
SSGGPPITAPRIKLQDGRYLAYKEHGLPREKANRKIVFIHGSDCCRHDAV
FATLLSPDLVEELGVYMVSFDRPGYCESDPHPSRTPRSLVSDIEELADQL
SLGSKFYVLGYSMGGQAAWGCLKYIPHRLAGVTLVAPVVNYYWKNLPLNV
STEGFNFQQKRDQLAVRVAHYTPWLIYWWNTQKWFPGSSIANRDHSLLAQ
PDKDIISKLGSSRKPHWAEVRQQGIHESINRDMIVGFGNWEFGPLDLENP
FLNKEGSVHLWQGDEDMLVPAKLQRYLAHQLPWVHYHEVPRSGHFFHYTK
GVVDDIVKSLLTSDVRASRVCI


References
    Title: Full-length messenger RNA sequences greatly improve genome annotation
    Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL
    Ref: Genome Biol, 3:RESEARCH0029, 2002 : PubMed

            

    Title: Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
    Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R and Davis RW <79 more author(s)>
    Ref: Nature, 408:816, 2000 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer