arath-SCP7

 
Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) At3g10450 SCPL7 F13M14.27 Serine carboxypeptidase-like 7

Relationship
Block X
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



3 Genbank : AK221427, AC011560, AC013428
>3 UniProt links 1 more: Q56Y96, Q9SQX6, D7L8Y8
>3 UniProtTrembl links 1 more: Q9SQX6, Q56Y96, D7L8Y8
>3 Interpro links 1 more: Q9SQX6, Q56Y96, D7L8Y8
>3 Prodom links 1 more: Q9SQX6, Q56Y96, D7L8Y8
>3 Pfam links 1 more: Q9SQX6, Q56Y96, D7L8Y8
>3 PIRSF links 1 more: Q9SQX6, Q56Y96, D7L8Y8
>3 SUPERFAM links 1 more: Q9SQX6, Q56Y96, D7L8Y8
>3 QuickSwissBlast links 1 more: Q9SQX6, Q56Y96, D7L8Y8
1 Tair database : At3g10450
 
Sequence
Graphical view for this peptide sequence: arath-SCP7
Colored MSA for Carboxypeptidase_S10 (raw)
MANDYVSTVLLLLSLLIFLSQRTDSASIVKSLPGFDGPLPFELETGYIGV
GEEEEVQLFYYFIKSERNPQEDPLLLWLSGGPGCSSISGLLYENGPVNVK
IEVYNGTLPSLVSTTYSWTKVSSIIYLDQPVGTGFSYSRTKLVNKPSDSG
EAKRIHEFLHKWLGKHQEFSSNPFYVGGDSYCGMVIPALVQEISKGNYVC
CKPPINLQGYILGNPSTENEVDINYRIPYAHGMALISDELYESMKRICKG
KYENVDPRNTKCLKLVGEYQKCTKRINKALIITPECVDTSPDCYMYRYLL
TTYWANDENVQRALHVNKGSIGEWVRCYFEIPYNHDIKSSVPYHMNNSID
GYASLIFSGDHDMEVPYLGTQAWIRSLNYSLIDDWRPWMIGDQIAGYTRT
YANKMAFATIKGGGHTPEYKPEESYIMFQRWISGQPL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MANDYVSTVLLLLSLLIFLSQRTDSASIVKSLPGFDGPLPFELETGYIGV
GEEEEVQLFYYFIKSERNPQEDPLLLWLSGGPGCSSISGLLYENGPVNVK
IEVYNGTLPSLVSTTYSWTKVSSIIYLDQPVGTGFSYSRTKLVNKPSDSG
EAKRIHEFLHKWLGKHQEFSSNPFYVGGDSYCGMVIPALVQEISKGNYVC
CKPPINLQGYILGNPSTENEVDINYRIPYAHGMALISDELYESMKRICKG
KYENVDPRNTKCLKLVGEYQKCTKRINKALIITPECVDTSPDCYMYRYLL
TTYWANDENVQRALHVNKGSIGEWVRCYFEIPYNHDIKSSVPYHMNNSID
GYASLIFSGDHDMEVPYLGTQAWIRSLNYSLIDDWRPWMIGDQIAGYTRT
YANKMAFATIKGGGHTPEYKPEESYIMFQRWISGQPL

no DNA




References
    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            

    Title: An expression and bioinformatics analysis of the Arabidopsis serine carboxypeptidase-like gene family
    Fraser CM, Rider LW, Chapple C
    Ref: Plant Physiol, 138:1136, 2005 : PubMed

            

    Title: Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana
    Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Blocker H, Perez-Alonso M and Tabata S <127 more author(s)>
    Ref: Nature, 408:820, 2000 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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