arath-SCPL34

 
Arabidopsis thaliana (Mouse-ear cress), Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress), MKD15.7 At5g23210 serine carboxypeptidase II-like protein at5g23210

Relationship
Block X
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



2 Genbank : AB007648, AK228998
>3 UniProt links 2 more: Q0WPR4, F4KCT5, A8MQN9
1 Ncbi-nid : 2564048
1 Ncbi-pid : 10177810
>3 UniProtTrembl links 2 more: Q0WPR4, F4KCT5, A8MQN9
>3 Interpro links 2 more: Q0WPR4, F4KCT5, A8MQN9
>3 Prodom links 2 more: Q0WPR4, F4KCT5, A8MQN9
>3 Pfam links 2 more: Q0WPR4, F4KCT5, A8MQN9
>3 PIRSF links 2 more: Q0WPR4, F4KCT5, A8MQN9
>3 SUPERFAM links 2 more: Q0WPR4, F4KCT5, A8MQN9
>3 QuickSwissBlast links 2 more: Q0WPR4, F4KCT5, A8MQN9
1 Tair database : At5g23210
 
Sequence
Graphical view for this peptide sequence: arath-SCPL34
Colored MSA for Carboxypeptidase_S10 (raw)
MGSHSVEFSVLVLFLVSFLLGSTSAEKLCSDNDGDNGCFRSRVLAAQRAD
RVKELPGQPPVKFRQYAGYVTVNETHGRALFYWFFEATQNPSKKPVLLWL
NGGPGCSSIGFGAAEELGPFFPQNSSQPKLKLNPYSWNKAANLLFLESPV
GVGFSYTNTSRDIKQLGDTVTARDSYNFLVNWFKRFPQYKSHDFYIAGES
YAGHYVPQLSELIYKENKIASKKDFINLKGLMIGNALLDDETDQKGMIEY
AWDHAVISDALYEKVNKNCDFKQKLVTKECNDALDEYFDVYKILDMYSLY
APKCVPTSTNSSTSHSVAGNRPLPAFRSILRPRLISHNEGWRRMAAGYDP
CASEYTEKYMNRKDVQEALHANVTNISYPWTHCSDTVSFWSDAPASMLPT
LRTLVSAGLRVWVFSGDTDGRIPVTATRYSLKKLGLKIVQDWTPWYTKLQ
VGGWTVEYDGLMFVTVRGAGHQVPTFKPREALQLIHHFLGNKKLPTFPF
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MGSHSVEFSVLVLFLVSFLLGSTSAEKLCSDNDGDNGCFRSRVLAAQRAD
RVKELPGQPPVKFRQYAGYVTVNETHGRALFYWFFEATQNPSKKPVLLWL
NGGPGCSSIGFGAAEELGPFFPQNSSQPKLKLNPYSWNKAANLLFLESPV
GVGFSYTNTSRDIKQLGDTVTARDSYNFLVNWFKRFPQYKSHDFYIAGES
YAGHYVPQLSELIYKENKIASKKDFINLKGLMIGNALLDDETDQKGMIEY
AWDHAVISDALYEKVNKNCDFKQKLVTKECNDALDEYFDVYKILDMYSLY
APKCVPTSTNSSTSHSVAGNRPLPAFRSILRPRLISHNEGWRRMAAGYDP
CASEYTEKYMNRKDVQEALHANVTNISYPWTHCSDTVSFWSDAPASMLPT
LRTLVSAGLRVWVFSGDTDGRIPVTATRYSLKKLGLKIVQDWTPWYTKLQ
VGGWTVEYDGLMFVTVRGAGHQVPTFKPREALQLIHHFLGNKKLPTFPF

Graphical view for this nucleotide DNA sequence (4040 bp): arath-SCPL34



References
1 more
    Title: An expression and bioinformatics analysis of the Arabidopsis serine carboxypeptidase-like gene family
    Fraser CM, Rider LW, Chapple C
    Ref: Plant Physiol, 138:1136, 2005 : PubMed

            

    Title: Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana
    Tabata S, Kaneko T, Nakamura Y, Kotani H, Kato T, Asamizu E, Miyajima N, Sasamoto S, Kimura T and Fransz P <119 more author(s)>
    Ref: Nature, 408:823, 2000 : PubMed

            

    Title: Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence features of the regions of 1,191,918 bp covered by seventeen physically assigned P1 clones
    Nakamura Y, Sato S, Kaneko T, Kotani H, Asamizu E, Miyajima N, Tabata S
    Ref: DNA Research, 4:401, 1997 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer