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Gene_locus Report for: arath-a0a1p8awg3

Arabidopsis thaliana (Mouse-ear cress). Alpha/beta hydrolase family protein

Relationship
Family|UCP031088
Block| X
Position in NCBI Life Tree|Arabidopsis thaliana
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Peptide
Graphical view for this peptide sequence: arath-a0a1p8awg3
Colored MSA for UCP031088 (raw) 
MDTLRFELSSASFTSAVTASSLHSHSRYFFSSVQLGRVGSSSPAITSVSR
TTVNEICTADELHYVPVPNSDWRVALWRYLPSPKAPKRNHPLLLLSGIGT
NAVTYDLSPECSFARSMSGSGFDTWILELRGAGLSSLSVDTNLGKGNNQQ
RIVSNLLENFISVSERLENVLDGGSKILGMQDRLSKRAGDFKQRFELIPH
YNWDFDNYLEEDVPSAMDYVRTQTKSKDGKLLAVGHSMGGILLYALLSRC
GFKGMDSGLAGVTTLASTFDYSSSGTLLKYLLPMKEPAQAINLPIMPIDT
MLAMAHPLMCRPPYSLSWLTANISAPQMMDPEVIEKLVLNSLCTVPVKLL
LQLTTAVDHGGLRDRTGTFCYKDHISKTNVPILALAGDWDIICPPDAVYD
TVKLIPEHLATYKVVGSPGGPHYGHQDLISGRTVCTMINTSSFIYESYRS
VLYSTFHSPYRLGTKYIL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
MDTLRFELSSASFTSAVTASSLHSHSRYFFSSVQLGRVGSSSPAITSVSR
TTVNEICTADELHYVPVPNSDWRVALWRYLPSPKAPKRNHPLLLLSGIGT
NAVTYDLSPECSFARSMSGSGFDTWILELRGAGLSSLSVDTNLGKGNNQQ
RIVSNLLENFISVSERLENVLDGGSKILGMQDRLSKRAGDFKQRFELIPH
YNWDFDNYLEEDVPSAMDYVRTQTKSKDGKLLAVGHSMGGILLYALLSRC
GFKGMDSGLAGVTTLASTFDYSSSGTLLKYLLPMKEPAQAINLPIMPIDT
MLAMAHPLMCRPPYSLSWLTANISAPQMMDPEVIEKLVLNSLCTVPVKLL
LQLTTAVDHGGLRDRTGTFCYKDHISKTNVPILALAGDWDIICPPDAVYD
TVKLIPEHLATYKVVGSPGGPHYGHQDLISGRTVCTMINTSSFIYESYRS
VLYSTFHSPYRLGTKYIL

References
    Title: Araport11: a complete reannotation of the Arabidopsis thaliana reference genome
    Cheng CY, Krishnakumar V, Chan AP, Thibaud-Nissen F, Schobel S, Town CD
    Ref: Plant J, 89:789, 2017 : PubMed

            

    Title: Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms
    Zapata L, Ding J, Willing EM, Hartwig B, Bezdan D, Jiao WB, Patel V, Velikkakam James G, Koornneef M and Schneeberger K <1 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 113:E4052, 2016 : PubMed

            

    Title: Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
    Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R and Davis RW <79 more author(s)>
    Ref: Nature, 408:816, 2000 : PubMed

            


Other Papers

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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