arath-q9lhe8

 
Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MZE19 (At3g19970/MZE19_2)

Relationship
Family Duf_829
Block X
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



>3 Genbank links 1 more: AY039875, BT006339, AP002050
2 UniProt : Q9LHE8, D7LAU7
2 UniProtTrembl : Q9LHE8, D7LAU7
2 Interpro : Q9LHE8, D7LAU7
2 Prodom : Q9LHE8, D7LAU7
2 Pfam : Q9LHE8, D7LAU7
2 PIRSF : Q9LHE8, D7LAU7
2 SUPERFAM : Q9LHE8, D7LAU7
2 QuickSwissBlast : Q9LHE8, D7LAU7
1 Tair database : At3g19970
 
Sequence
Graphical view for this peptide sequence: arath-q9lhe8
Colored MSA for Duf_829 (raw)
MGSLSGIIQRPLVAAAAVITASVSADVSERFSSLRSLVRGSESEQIAPSV
SGLVQEERSLWVSQVSASKLADLSFVSRICVPVPNVDLLASNPSCSLATS
VTSLSALRSVYQSAELAKASKPVAFTIGASLVVPDISYRWHLPEPSAVDM
SGSSSCVSEKNRTVVVLLGWLGSKQKHLKKYADWYTSKGYHVITFTLPMN
EIMSYQVGGKAEKNIESLVNHLADWLDEEQKKNLVFHTFSNTGWLTYGAI
LEKFQKQDSSLMGRVKGCIVDSAPVAAADPTVWASGFSAAFLKKSSVATK
GSASSSYESNGINISQPKPAATETALLLVLEKFFAVILNLPKVNRRLADV
LDTLSTAQPSCPQLYIYSSADRVIPVEQVESFIVEQRKAGHEVRACNFIS
SPHVDHFRSNPELYTAELNHFMNNFVLSCCHHSS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MGSLSGIIQRPLVAAAAVITASVSADVSERFSSLRSLVRGSESEQIAPSV
SGLVQEERSLWVSQVSASKLADLSFVSRICVPVPNVDLLASNPSCSLATS
VTSLSALRSVYQSAELAKASKPVAFTIGASLVVPDISYRWHLPEPSAVDM
SGSSSCVSEKNRTVVVLLGWLGSKQKHLKKYADWYTSKGYHVITFTLPMN
EIMSYQVGGKAEKNIESLVNHLADWLDEEQKKNLVFHTFSNTGWLTYGAI
LEKFQKQDSSLMGRVKGCIVDSAPVAAADPTVWASGFSAAFLKKSSVATK
GSASSSYESNGINISQPKPAATETALLLVLEKFFAVILNLPKVNRRLADV
LDTLSTAQPSCPQLYIYSSADRVIPVEQVESFIVEQRKAGHEVRACNFIS
SPHVDHFRSNPELYTAELNHFMNNFVLSCCHHSS

no DNA




References
    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            

    Title: Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones
    Kaneko T, Katoh T, Sato S, Nakamura A, Asamizu E, Tabata S
    Ref: DNA Research, 7:217, 2000 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
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